Carg22104 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22104
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA-directed RNA polymerase III subunit RPC3-like
Location	Cucurbita_argyrosperma_scaffold_229 : 106289 .. 113248 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACTCGCTTACCCAACCAGTTGTTCTCCCGCCATGTCCTTCAACCTTGTACAGATCAATTTTCGCTCACCTTTTTCCCACCGGAGCATGAGTTTTTAAGCGGTACGCCTCACTATTGCTCTCTTATCGTCTCTCTACTCGGTTGAAGCGAAGATTTTCGATGTTTCAAGCATCTACACTATAGTTTCTGCTGAATCAGTGCTTTATGAGCTTACAGTTCGTCAATGTCAATTCCAATTACTTCAAAATACTTGATATCATAGACGCACGGCAATCTTAAAGAAGGAAATCATGGCGTCGACTCAGTATGGCATCAAATATGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGGTATGCCTTTTCTTTTCTAATCCTTGCTTCAAATCTTGATTCGTGTCATGTTATCAGCCTGTTCTTCTTCGTATCATCGTTTTTCATTAATATTGACTGTGCATTGACAGAAAGTGTGCGAAACCCTGCTTCGAAGGGGGCCTCTGACCTTGAGACTTCTTGTACGATTCACGGAACTTAGCTCATCACAGATTAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGTATAATGAGTTTTCATTCATGGAGAAACTTCTGAGTCTATGGTATTTTTTTTGGTAAATTGTTTGGTTAATTAGTGACAATAAGCTCATTGGCTAAAAGAATAACCATTTTACCTTAAATAGAATCTGGATTTTAGAACTGAGTTCGATTAAGTTCATATAACCGGGATTATATAGCGTCATTTAAAATAATGTATCTATGCTCAGTTTAAGCCCGTTCGTTTTCTAAATTTATCAACTTTGATAGGTAGTTATTTTATGGAACCATATTGACACTATTAGGTAATTGGTGTGTTAAGAAGGTAGTTGTATTCTCGAATAGGACACCATGTGTTTGCAGATTGAGCTTCTTATCATCGTTATTGTAAATGCACGTGTAGGTGAGTTCGGAGACGCACCCAAGGCAGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCAGAAAAGCTTGAGAAAGATAAAGATGTTAGTTCATATACTCACATTGGTAAAACTCTTGTTGAGAATTTTCAACTTCGAGGGAATTTAGATTCTTAACTTATGTTTCTGATTTCGTAGTGTGAAGAACTTCTTGAGGGTCTGTTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACATGCAGGCAAGTTTTTTACCTGGTATTTTTATTTGCATTTTGCTATTTACTTCTATCTGCAGTATTTTTTAATATGCTACGTTCTCCTAGTGCCATAAAATCGTGTATTGATTTAAATTTTTAAGAGGAACGTTATTGATCAGAAAAGGGAGATTTTAAGATTGATGGATCCCAGAGATCATTTCTATATCATTCATGTCAGTCTTAATATCAGATTTTATTATCACCTCTTGACTTGATTGGGATTTCAGTTATCAATTAAATTTTTATTTGTTTCAAGAAAAAAAATCGTTTTTCTTTCAACCTCATCTTGTTTAGAAGAGTGAAATTGGTGCTTAATCCTAAAACTGTGATATGTTTTCGTTGAACTTTCTGATCAAGTACATCAATGAAGAAATAACATAATTTAGAAGGCGGCTCTTGTACTGAGAATGTGTTTGACTTGTATTTGAATATGCCACTTATATAAAACGTTTGGTTTCTGAGGTATTGTTTCTGTATTTTCAGGAAACCGTCCAATTCCAGATGTTGTAAATGAAAGTTTATTAAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAGCAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTAGCTGAATTTATGTGAAACTTGTCATGCATATTGGTGCTAAATATCATCTTTGAGTCATTAAATGGATCCATGACAGGTATCTGAGGTGCCACCGACCTTAGAGCAACGTCTTGTAGAATCAGCCCGTCCTATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAGAGAGTGAACATTATTCATCAATTTCTGGACAGAAGGTATGTATGAGATTATCGTATCAAATTACCTAGCTGAAACATGTTTGGTACTTGCTCACAATTTTTCTGTAGCGCAAGCGAGGTGATCTGGATACGATACAAGAGTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGTTGGTGTTATTTTTTCCTTCAGAATTTCTTATATATTCTAACTAGATCATATGAAATTACAGTGAATGTGATGCTCCTTTCTTGTATCCACATTATTGATGAGAAAGAAAATAAGGCATGACAAATGCCCACCCCTTGGTCCAGTTTCGGTTGTACAAGCGGGCAGAGCATTCTTTTCAAAAAAAGAAGGCATGACAAATATGAACAATTTACTTTAACTCCCTTGAAACCTATTGATAGAGTACTTCTATGTAATGGGAAAAAAAAAGCGCAACCTAGATGAGGGACCCGAGCCTATGGAGCACAAATCAAACAAAAGGCCCCGAATATAAAATAATGAGGAGAGAAGGCATGTTAATGAAGGATTTGTGTAGAGCACTCCAATTATTGGAGGTTGTATACTGTATGTTTTATCAAGTTGGTAGCTGACACATGCCAACTTTGTACAAAAATGAGGGGAAAACTGTACTTAAATTCACAAGTTCTTAAACTCAAAATATCTCTCTCTGTTGAATATTTGATAAATCATTAACTTGATTTTAAATTAATTGTTCATCCCATGCTAACTCCCCCCCTATATCTTATGGTCAATTCAAATGGTAATTGCATCAATATCTTACTATGGCTCTAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGCGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGGTACAATCTAATGTTGGTGTAGATTTCTAAAGGAGTTTAGTTATGCACGTATTTGATCTTGATGCACATTGATCGTATAAAAATACATGTTGTGAGTTGGTACTAGAAGGAATTGTGTGGGCGCTCTTTTGAAGACAATTCTCTATTTTTAAAAATAAAAATATTAGTGAAAGCATGTTGGCATATTTACTTTTTACAGGCTGTTTTCTCATGTTTTCTTTTAATTTGTTTTTAAAGATGATTTGATTCTTAAAACAATTGAAATTATTTTTTCTAGAACTATTGCCTCGTAAATAATGATCAAGTGCAGAACAAGGCTAATCTTTCTGAGCCTTCTCCTTCAAATTTTAAAGTTAAAAGCAGAAAACTGTTTTTCAAGATGGCTTTCAGGATTCATATTTGATTTTATCATGTAAAGAATTCATTTACTTCAATGCAGACAATAATGACCTTTGCAAAGCCTGCCAGTAGAGTAAAGCAAAAAAATGAGAATTTTTGGGGCACTTTATCAGTATCATTAACCAGCATGCACATTATATTTTGTGCTCTTATTACGTTCTTTCCTGTTCCACCTCTTTTACATAATATGTTTCTTAAACTGAGTAATAGTTTCTTGGCTTCTTTTATCTAGACTCCTTTTCTTGTTATGTTACTCTATGATGGAGGTCTAGTTGGATGCTTGGTTCATGATGCATTTTGTTAAGACTAAATCATGAACGATAGGCCTTAAGAAATATAAGAAAATGATACATGATTTGGAAACTAGCGCAGAAATGTGTTTCCCTTTACCACTTATGTCCACTTTTATGTCTCCTGTCCCAAAACTTCAATTGTTTGCAGTTCCTTTGTCACTGGATAACATATACGAGGAGGTAATGAAGAATGAAGTAGGACGCAGTATGACTTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCAGGGATGGAAGATTATAAAATTAGTATGTTCACCCTCTGTTAAACTAAGTTTTCCCGATGTGTTTAATTTCCACACTTCCCATCTGATTTACTTTAAATTTCTTCTAAAATCCTTTGCTTGCCCAGATTTACAGAAGATCATCGAACAAGCTCAAATTGATGAGGTTTCTCTCTCCCTCTCATTTATTTAGTGAAAAATACACCCTTGTTCTCTGAAATTTGAGAAATTACATGTCTTCGTTCTTAAATTTTAAAAATGACATCTTATTGCTTGCGCAACCAGTTGATTGAAATCTCTTATCTGAGATAATTTGTTAGCAAGCATGATTCTTCTCTTATCCCTTGCACTTACAGACAAGTAATAATTTATAATGAACTAACTTCAATTTTCTTGATTGCAGGTTGAATCAATTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGGTAAGGAGTTATTGGTCGGTCAGTTGCTATCAAGGTTGTCTAGCTACCAAAAAAGCATGTATGCATTTGTAATATGCCTTTCATTTTATCTAGAAATGTATGTAATTTACACGTGAATGCAACTAATACATAATTGAACATCCATATATAATATACGGTTGGTTTTAAAATTCAACTTGAGCGTTAATTAAGGAGTAACAACCTAATAATATAATGGGCTGACCTTACCAATAGTTGTCTTTTTAATCTAGTAAAGATTACATGGAATTGTTATTTTTGTACTTAGTATTCTGAAATTGACTATTGGTAAAAAAAAATTGTTTATTTAATTTACAGATTTTCCATGTCTTTTTTCTGTAGATTTCCGATAGTGCATTTGTTGACAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAGTACCTATACATGGAGGTAAACATCTTTGCTCTGTATGCATGTGTTTTTGCATCCGGATTCATATATTTACGTCGTGAAGCAAAGATACTGTACTCCTTTTTCTCCCAATAAGAAGCATGACATTATTCATTGATAGAGTTGAAAAACACAAAGTGGGACCATGGAGGAAGGACACAGTACTGGATTGCTTGTTTGAGTTTGATGGCATTGGACGTATTGGTTTTCAGAATGTTAGTTAAATGCTGAGATAACTGTGCAATTAGACATTGGACCTAACTAGAAAAAATATTAAAGGATAGTTAATGTTTGATCAGGTATCATTATGTTTTCTTATCAGAATTGGTTGTAGTTTAAATTAGCAACTTTGCACATCTTTGATTTAAGTTTTCCTTTTAGACTTGTTATTATGCACCTACAAATCTTATTCGTTTTATTGTTTTGCTGTACTTATCTTTTATTTTATTTTATTTTTGATATTTACGTATCTAAAAGTCTATATCATACCACATCTAGTAAGAATGTGTTTTGTCTCTATTTCTTCATTACTGTGTATCATCTTGTACCTACACTGGCTAGACATCTCTTTTTCCACTTGAACGATTTACATTGTTAACCTTTTTGGGGGATTCATCCTAGTAACACAATCTATCTTTTGTTGCAGAAAGTAGCTATAACAGTTCCTAGACATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGGTTAGTGTGCACAACATTCTAATAAATTCATATATGCAATTGTAATGGTATTAGGTTCTATTAGACTTCTCTAACAGAGATATTGGCCAAGTGTGCATCTGATCACTGATAACTTTATCTTCAGTCATCTTATTCACGTATTTCCTTCCTACTAGAGAAATCGAGTCTTACCTTTTGATGTGGTTTATCATGGCAGAACCTAAAATTGCATTTATCCTACCGGTTTTAGTACTCTAAGAGGCCGAATGCAGCTTGCTTCCTAATTTTATTAATGATGTCTATTTTAAAAATCACCTTTTGGTCCCATGTCCCTGAATTTTAACAATTTAGTTTTTGAACTTTGATTTGTAACAATATAGTACATTCAATTTTGCAACAATTTTATCTTTGTATTTTCAAGTTCTAACCATTTAATCTCTATTGAAAATTTAATAGAATTTCAATAAACTAATTAGGGACCCAATAGCTTTATAGAGTATAAAGTCTAAACCCTAAATTCAAATTTAGGGCCAAACCATTAGTTCCTCTTTCTCTCTTGATGAAGCTCTAGCATTGAATAATACAATGGCTAAAGCTTGATTCATATGGGGCCGATGGCTAATTCCTCCTCCATAAACAGCGAACGTCAGAATTCGTCATCAGTTATTCCTATGTCTACAGAGGCTTGGAGTTCTCTAAAGAAGTGCAAAAACGATCTAATAAAGTCTATCCATCCAAAAAACTAAGCTTTTAATGAAGTTGTTCTAAAGGATCATTCCTTCCATGTTTTCTCACTGTGTGTGTATGTGGGAATGTTCAAAAACTGACTCCTTGCTGTGGCAACCAACTCTTTTGCAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGTCCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTTTAATGCTTTTCCATGACTTCTAATACGAAGGATTTATAGATCAGTAGCTCCTTGAAGAGTGAATGTGGAGGAAGCCTTGCCCATCTTTTAGACTTGCAAAATAAAATTATGATTAGCAGTGTTTTCTTCTTCCCATTAGGATACAGGAACTTCCATCTTCCTTATAAATATTGTTTGATTAAGGTTAATTATGGAATATGGCAAATGGCCTTCCTGAGTATACTTTTTATTAT

mRNA sequence

GCACTCGCTTACCCAACCAGTTGTTCTCCCGCCATGTCCTTCAACCTTGTACAGATCAATTTTCGCTCACCTTTTTCCCACCGGAGCATGAGTTTTTAAGCGGTACGCCTCACTATTGCTCTCTTATCGTCTCTCTACTCGGTTGAAGCGAAGATTTTCGATGTTTCAAGCATCTACACTATAGTTTCTGCTGAATCAGTGCTTTATGAGCTTACAGTTCGTCAATGTCAATTCCAATTACTTCAAAATACTTGATATCATAGACGCACGGCAATCTTAAAGAAGGAAATCATGGCGTCGACTCAGTATGGCATCAAATATGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGAAAGTGTGCGAAACCCTGCTTCGAAGGGGGCCTCTGACCTTGAGACTTCTTGTACGATTCACGGAACTTAGCTCATCACAGATTAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTCGGAGACGCACCCAAGGCAGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCAGAAAAGCTTGAGAAAGATAAAGATTGTGAAGAACTTCTTGAGGGTCTGTTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACATGCAGGAAACCGTCCAATTCCAGATGTTGTAAATGAAAGTTTATTAAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAGCAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTATCTGAGGTGCCACCGACCTTAGAGCAACGTCTTGTAGAATCAGCCCGTCCTATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAGAGAGTGAACATTATTCATCAATTTCTGGACAGAAGCGCAAGCGAGGTGATCTGGATACGATACAAGAGTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGCGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTGTCACTGGATAACATATACGAGGAGGTAATGAAGAATGAAGTAGGACGCAGTATGACTTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCAGGGATGGAAGATTATAAAATTAATTTACAGAAGATCATCGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTGCATTTGTTGACAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAGTACCTATACATGGAGAAAGTAGCTATAACAGTTCCTAGACATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGTCCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTTTAATGCTTTTCCATGACTTCTAATACGAAGGATTTATAGATCAGTAGCTCCTTGAAGAGTGAATGTGGAGGAAGCCTTGCCCATCTTTTAGACTTGCAAAATAAAATTATGATTAGCAGTGTTTTCTTCTTCCCATTAGGATACAGGAACTTCCATCTTCCTTATAAATATTGTTTGATTAAGGTTAATTATGGAATATGGCAAATGGCCTTCCTGAGTATACTTTTTATTAT

Coding sequence (CDS)

ATGGCGTCGACTCAGTATGGCATCAAATATGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTCGCGAAAGTGTGCGAAACCCTGCTTCGAAGGGGGCCTCTGACCTTGAGACTTCTTGTACGATTCACGGAACTTAGCTCATCACAGATTAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTCGGAGACGCACCCAAGGCAGACACACAATACTTGGCGTTGTTTAGTAACATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCAGAAAAGCTTGAGAAAGATAAAGATTGTGAAGAACTTCTTGAGGGTCTGTTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACATGCAGGAAACCGTCCAATTCCAGATGTTGTAAATGAAAGTTTATTAAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCCAAGTTGAAGAGCAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTATCTGAGGTGCCACCGACCTTAGAGCAACGTCTTGTAGAATCAGCCCGTCCTATGGAAGTTATAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAGAGAGTGAACATTATTCATCAATTTCTGGACAGAAGCGCAAGCGAGGTGATCTGGATACGATACAAGAGTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGACGGAGCGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTGTCACTGGATAACATATACGAGGAGGTAATGAAGAATGAAGTAGGACGCAGTATGACTTTAGATCGGGTTGAAGCTTCCCTCTCTGCATTGGGTTGTTCAGGGATGGAAGATTATAAAATTAATTTACAGAAGATCATCGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTCTAAAAAGATATGGAAGAGATGCGTACAGAATGTTCAGATTCCTATCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTGCATTTGTTGACAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAGTACCTATACATGGAGAAAGTAGCTATAACAGTTCCTAGACATTCCCTGTGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAACAAGACAAAGAGCTTCTGAATCTTCCACCAGACAAGCGTGGTGGTCCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGATACTCCTGGAGTCGTCGTTGCTGAAGCTCGACGATGCTTTAATGCTTTTCCATGACTTCTAA

Protein sequence

MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF

Homology

[Close]

BLAST of Carg22104 vs. NCBI nr
Match: XP_022945853.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata])

HSP 1 Score: 1017.3 bits (2629), Expect = 1.9e-293
Identity = 520/522 (99.62%), Postives = 521/522 (99.81%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRKRGDLD IQESGDADGIILWRANFDEF+RCLRHKACIEHVRSQFDDGAVNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. NCBI nr
Match: XP_023541704.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1015.0 bits (2623), Expect = 9.2e-293
Identity = 519/522 (99.43%), Postives = 520/522 (99.62%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSKHAGNRP PDVVNESLLKLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPSPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRKRGDLD IQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAIT+PRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. NCBI nr
Match: XP_022968436.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima])

HSP 1 Score: 1013.4 bits (2619), Expect = 2.7e-292
Identity = 518/522 (99.23%), Postives = 521/522 (99.81%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLL+RFTELSSSQINNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRKRGDLD IQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSL+NIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK
Sbjct: 301 TRSSEKIVKTEITVPLSLENIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAITVPR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVAITVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. NCBI nr
Match: XP_022141200.1 (uncharacterized protein LOC111011656 isoform X1 [Momordica charantia])

HSP 1 Score: 934.5 bits (2414), Expect = 1.6e-268
Identity = 473/522 (90.61%), Postives = 500/522 (95.79%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           M +TQ GIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILI
Sbjct: 1   MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT+VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLA+ASEKLEKDK+CEELL
Sbjct: 61  QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERAKSSKHAGNRPIPDVV+ESL KLL AHFVERCPAPEP LS QV
Sbjct: 121 EGLLQNGRLSMEQLVERAKSSKHAGNRPIPDVVHESLFKLLTAHFVERCPAPEPILSAQV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPP+KRGAKAAK+SEVP TLEQRLV  ARPMEV+RFS+ ETNTEAE+SE    ISGQ
Sbjct: 181 EEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMEVLRFSMSETNTEAEKSE--LPISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRK  +L+ +QESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEK VKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC GM+DYKINL+K
Sbjct: 301 TRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCPGMDDYKINLRK 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQI+EVESIVLKRYGRDAYRMFRFLS+TGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+T PRHSLCLLWRVD+YNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL
Sbjct: 421 KDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           +LPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 SLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 520

[Close]

BLAST of Carg22104 vs. NCBI nr
Match: XP_008439232.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo] >XP_008439233.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo])

HSP 1 Score: 886.3 bits (2289), Expect = 4.9e-254
Identity = 443/522 (84.87%), Postives = 485/522 (92.91%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           M  TQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+ SQ+NNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLAIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERA+SS  AGNRPIPDVV++SL KLLNAHFVERCPAPEPTLSP+V
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAK+ EVP TLEQRL+E+ARP+EV+RFS+G+TN EAE+SEHYS ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRK  +L+  Q+SG ADG ILWRAN+DEFIRCLRHKAC+EHVRSQFDDG VNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC GM+DYKINL++
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           I+EQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+E++KELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           +LP D    PL K+ +    VR LL SSL+KLDDALMLFHDF
Sbjct: 481 SLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. TAIR10
Match: AT3G49000.1 (RNA polymerase III subunit RPC82 family protein)

HSP 1 Score: 459.1 bits (1180), Expect = 3.5e-129
Identity = 251/536 (46.83%), Postives = 371/536 (69.22%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTE--LSSSQINNSLLI 60
           M+ +++GI YA+HIIT  FG++V+KVCE LLR+GPL+ R + R  E  ++ +++ + L +
Sbjct: 1   MSMSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYL 60

Query: 61  LIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEE 120
           LIQHNCVQAF+   E   G   KA  QY+ LF+NILHR+R++KF  I +E+L  D  C  
Sbjct: 61  LIQHNCVQAFS--IEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEEL--DSKCGA 120

Query: 121 LLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSP 180
           +L+GLL NGRL++ Q IER + S   GN    + + +SL KL+ A FVER P+PEP L  
Sbjct: 121 VLDGLLSNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLGN 180

Query: 181 QVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFS-IGETNTEAEESEHYSSI 240
             +E+ P ++RGAKAAK+ + P TLE+++VE+A P++ IRF  I E ++ +  ++  S+I
Sbjct: 181 --KEKEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSNI 240

Query: 241 SGQKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAI 300
           +  KRK+ D+DT     D+   ++WR NF+EFI  LRHKAC+E V+ + D+G   VL A+
Sbjct: 241 TEGKRKQRDVDT----SDSSSGVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAM 300

Query: 301 LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGM------ 360
           LE  RS EK VKT+ + P+S+ +IYEEV+K E GR+M  +RVEA L  L  +        
Sbjct: 301 LEVGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFV 360

Query: 361 ----EDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFV 420
               + Y ++ + II  AQ DE+E++V++RYG++A+RMFR+LS+ G  VET+KI+D+A  
Sbjct: 361 NEVNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALT 420

Query: 421 DKNEAPKILYRLWKDEYLYMEKVAITVP-RHSLCLLWRVDRYNLWEHVLDEMYHASLNLQ 480
           +K + P+ L ++WKD YL+M+K+A+T P  ++  LLW+V++  +   +LDEMYHASLNL 
Sbjct: 421 EKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYHASLNLS 480

Query: 481 LRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           LR A+E+E +KELL LP DK  GPL++R  +++  R+LL S++ KLDDA+MLFHDF
Sbjct: 481 LRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFHDF 523

[Close]

BLAST of Carg22104 vs. Swiss-Prot
Match: sp|Q9BUI4|RPC3_HUMAN (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.3e-27
Identity = 126/495 (25.45%), Postives = 220/495 (44.44%), Query Frame = 0


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           TQ  IK    ++  HFG +V K+   L+R G   LR++   T  S  Q+  +L +L+QHN
Sbjct: 2   TQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHN 61

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
            V          +    +   +Y A  S +L  +R+ +++   ++ L  D   E ++E L
Sbjct: 62  LV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYI-YTTKTLYSDTG-ELIVEEL 121

Query: 124 LQNGRLSMEQII----ERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQ 183
           L NG+L+M  ++    +R   +   G       V+ + ++L + HFV+RCP+  PT    
Sbjct: 122 LLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-VPTTENS 181

Query: 184 VEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISG 243
               PPP    A    ++E    L  +L             IG+        E   +   
Sbjct: 182 DPGPPPP----APTLVINEKDMYLVPKL-----------SLIGKGKRRRSSDE--DAAGE 241

Query: 244 QKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAIL- 303
            K KR    T  +    D  I W+AN D F +  R +A +  V ++ D  +  ++  +L 
Sbjct: 242 PKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLR 301

Query: 304 --EATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGC 363
             E T SS        T PLS + I+        + K  + + +TL  D     +   G 
Sbjct: 302 MSEITTSS----SAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 361

Query: 364 SGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 423
           SG   Y INL K +       +ES+V +R+G    R+FR + +    +E +++ D A + 
Sbjct: 362 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH-IEQKQVEDFAMIP 421

Query: 424 KNEAPKILYRLWKDEYLYMEKVAITVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNL 481
             EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL
Sbjct: 422 AKEAKDMLYKMLSENFMSLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSIANL 461

[Close]

BLAST of Carg22104 vs. Swiss-Prot
Match: sp|Q2TBL4|RPC3_BOVIN (DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.1e-26
Identity = 127/494 (25.71%), Postives = 221/494 (44.74%), Query Frame = 0


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           TQ  IK    ++  HFG +V K+   L+R G   LR++   T  S  Q+  +L +LIQHN
Sbjct: 2   TQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHN 61

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
            V          +    +   +Y A  + +L  +R+ +++  A + L  D   E ++E L
Sbjct: 62  LV---------TYQVHKRGVVEYEAQCNRVLRMLRYPRYIYTA-KTLYSDTG-ELIVEEL 121

Query: 124 LQNGRLSMEQII----ERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQ 183
           L NG+++M  ++    +R   +   G       V+ + ++L++ HFV+RCP    T +  
Sbjct: 122 LLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCPLVPATENSD 181

Query: 184 VEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISG 243
               PP     A    VSE    L  +L             IG+        E  +    
Sbjct: 182 TGPPPP-----APTLVVSEKDMYLVPKL-----------SLIGKGKRRRSSDEDATGEPK 241

Query: 244 QKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILE 303
            KR +   D  +   D DG I W+AN D F +  R +A +  V ++ D  +  ++  +L 
Sbjct: 242 AKRPKQTTDNKEPIPD-DG-IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML- 301

Query: 304 ATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGCS 363
             R SE    +    T PLS + I+        + K  + + +TL  D     +   G S
Sbjct: 302 --RMSEVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDS 361

Query: 364 GMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDK 423
           G   Y INL K +       +ES+V +R+G    R+FR + +   L E +++ D A +  
Sbjct: 362 GGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPA 421

Query: 424 NEAPKILYRLWKDEYLYMEKVAITVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQ 481
            EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL 
Sbjct: 422 KEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLI 461

[Close]

BLAST of Carg22104 vs. Swiss-Prot
Match: sp|Q5XIL3|RPC3_RAT (DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Polr3c PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-25
Identity = 120/495 (24.24%), Postives = 219/495 (44.24%), Query Frame = 0


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           TQ  IK    ++  HFG +V K+   L+R G   LR++   T+ S  Q+  +L +LI HN
Sbjct: 2   TQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHHN 61

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
            V          +    +   +Y A  S +L  +R+ ++  I + K       E ++E L
Sbjct: 62  LV---------IYHVHKRGVVEYEAQCSRVLRMLRYPRY--IYTTKTLYGDTGELIVEEL 121

Query: 124 LQNGRLSMEQII----ERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQ 183
           L NG+++M  ++    +R   +   G       V+ + ++L + HFV+RCP     L P 
Sbjct: 122 LLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPD 181

Query: 184 VEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVI-RFSIGETNTEAEESEHYSSIS 243
            +   P              PP     LV + + M ++ + S+         S+     +
Sbjct: 182 TDSSDPG-------------PPPPAPNLVINEKDMYLVPKLSLIGKGKRRRSSD--EDAA 241

Query: 244 GQKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAIL 303
           G+ + +    T  E    D  I W+ N D F +  R +A +  V ++ D  +  ++  +L
Sbjct: 242 GEPKAKKPRCTDNEEPTPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML 301

Query: 304 EATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGC 363
              R SE    +    T PLS + I+        + K  + + +TL  D     +   G 
Sbjct: 302 ---RMSEITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKAGD 361

Query: 364 SGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 423
           SG   Y INL K +       +ES++ +R+G    R+FR + +   L E +++ D A + 
Sbjct: 362 SGGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIP 421

Query: 424 KNEAPKILYRLWKDEYLYMEKVAITVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNL 481
             EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL
Sbjct: 422 AKEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANL 460

[Close]

BLAST of Carg22104 vs. Swiss-Prot
Match: sp|Q9D483|RPC3_MOUSE (DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.0e-24
Identity = 119/492 (24.19%), Postives = 219/492 (44.51%), Query Frame = 0


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           TQ  IK    ++  HFG +V K+   L+R G   LR++   T+ S  Q+  +L +LI HN
Sbjct: 2   TQAEIKLCSLLLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHN 61

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
            V          +    +   +Y A  S +L  +R+ ++  I + K       E ++E L
Sbjct: 62  LVL---------YHVHKRGVVEYEAQCSRVLRMLRYPRY--IYTTKTLYGDTGELIVEEL 121

Query: 124 LQNGRLSMEQII----ERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQ 183
           L NG+++M  ++    +R   +   G       V+ + ++L + HFV+RCP    T S  
Sbjct: 122 LLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPDTDSS- 181

Query: 184 VEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISG 243
            +  PPP              PTL   ++       V + S+         S+  ++   
Sbjct: 182 -DRGPPP------------PAPTL---VINEKDMYLVPKLSLIGKGKRRRSSDEDATGEP 241

Query: 244 QKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILE 303
           + +K    D  + S D DG I W+ N D F +  R +A +  V ++ D  +  ++  +L 
Sbjct: 242 KAKKPRYTDNKEPSPD-DG-IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLR 301

Query: 304 ATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGCSGM 363
            +  +        T PLS + I+        + K  + + +TL  D     +   G SG 
Sbjct: 302 MSEITTP-SSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDSGG 361

Query: 364 EDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNE 423
             + INL K +       +ES++ +R+G    R+FR + +   L E +++ D A +   E
Sbjct: 362 GMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPAKE 421

Query: 424 APKILYRLWKDEYLYMEKVAITVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLR 481
           A  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL  R
Sbjct: 422 AKDMLYKMLSENFILLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIER 460

[Close]

BLAST of Carg22104 vs. Swiss-Prot
Match: sp|Q7ZUX1|RPC3_DANRE (DNA-directed RNA polymerase III subunit RPC3 OS=Danio rerio OX=7955 GN=polr3c PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.5e-23
Identity = 114/483 (23.60%), Postives = 209/483 (43.27%), Query Frame = 0


Query: 14  IITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHNCVQAFTAVTE 73
           ++  HFG++V  V   L+R G LTLR L   T+L+   +  SL +L+QH         T 
Sbjct: 12  LLQEHFGDVVENVGTHLIRNGVLTLRALAHETKLALDLVKKSLCVLVQHG------MCTF 71

Query: 74  GEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSM-- 133
           G     P    +Y     +ILH +R+ +++  A + L  D   E ++E +LQ G+++M  
Sbjct: 72  GPGRRGPAGPVEYHINCEHILHMLRYPRYIYTA-KSLYGDTG-ELIVEEILQRGQMTMSS 131

Query: 134 --EQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKR 193
             + + +R   +   G     + V  +  +L+  HF++RC              PP    
Sbjct: 132 TVKTVADRLTHNMPEGQSMDYNEVVSAFSRLVETHFLQRC--------------PPMASA 191

Query: 194 GAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQKRKRGDLDT 253
            +     +E PP + Q     + P     + +   +         SS  G+  +R     
Sbjct: 192 ESSGTGSAETPPAVTQPSNPESHP---DCYKLPYISLSGHGKRRRSSEDGEADQRAAKKA 251

Query: 254 IQESGD-ADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEATRSSEKIV 313
             +S +  D  I W+ NF+ F    R +A I  V  + D  +  ++  +L  +  +    
Sbjct: 252 KTDSSECGDEGIHWQVNFERFHLHFRDQAIISAVSCKLDQTSGEIVRTMLRMSEVTTS-A 311

Query: 314 KTEITVPLSLDNIYEEVMKN-EVGR-------SMTLDRVEASLSALGCSGMEDYKINLQK 373
               T  LS + I+  +  N  + R       ++ +D     +   G SG   + +NL +
Sbjct: 312 NAAFTQALSANEIFRALPSNYNIARPILDQYLTLLVDDPMEFVGKAGDSGGGMFVVNLHR 371

Query: 374 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 433
            +       +ES+V +R+G  + R+FR L +   L E +++ D A +   EA ++LY L 
Sbjct: 372 ALANLARATLESVVQERFGSRSARIFRLLLRKRHL-EQKQVEDFAMIPAKEAKEMLYTLL 431

Query: 434 KDEYLYMEKVAITVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDK 481
            +  + ++++  T P H+      L+ V++      +L   Y    NL  R+ YE +++K
Sbjct: 432 SENLVQLQEIPKT-PDHAPSRTFYLYAVNQLPTARLLLQHCYKTVGNLIERRLYETKENK 466

[Close]

BLAST of Carg22104 vs. TrEMBL
Match: tr|A0A1S3AYY3|A0A1S3AYY3_CUCME (DNA-directed RNA polymerase III subunit RPC3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484083 PE=4 SV=1)

HSP 1 Score: 886.3 bits (2289), Expect = 3.3e-254
Identity = 443/522 (84.87%), Postives = 485/522 (92.91%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           M  TQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+ SQ+NNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLAIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERA+SS  AGNRPIPDVV++SL KLLNAHFVERCPAPEPTLSP+V
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EEQPPPRKRGAKAAK+ EVP TLEQRL+E+ARP+EV+RFS+G+TN EAE+SEHYS ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRK  +L+  Q+SG ADG ILWRAN+DEFIRCLRHKAC+EHVRSQFDDG VNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC GM+DYKINL++
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           I+EQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+E++KELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           +LP D    PL K+ +    VR LL SSL+KLDDALMLFHDF
Sbjct: 481 SLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDALMLFHDF 522

[Close]

BLAST of Carg22104 vs. TrEMBL
Match: tr|A0A0A0LBF3|A0A0A0LBF3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182170 PE=4 SV=1)

HSP 1 Score: 879.0 bits (2270), Expect = 5.2e-252
Identity = 443/522 (84.87%), Postives = 485/522 (92.91%), Query Frame = 0


Query: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
           M  TQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+ SQ+NNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
           QHNCVQAFT VTEGEFGDAPK DT YLALFSNILHRMRFSKF+AIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180
           EGLLQNGRLSMEQ++ERA+SS  AGN PI DVV++SL KLLNAHFVERCPAPEPTLSP+V
Sbjct: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240
           EE PPPRKRGAKAAK+SEVP TLEQRL+E+ARP+EV+RFS+G+TN EAE+SEH+S ISGQ
Sbjct: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240

Query: 241 KRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300
           KRK  DL+  Q+SGDADG ILWRAN+DEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC GM+DYKINL++
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420
           IIEQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+E++KELL
Sbjct: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480

Query: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           +LP D    PL K+ +   NVR LL SSL+KLDDALMLFHDF
Sbjct: 481 SLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521

[Close]

BLAST of Carg22104 vs. TrEMBL
Match: tr|A0A1S4DT15|A0A1S4DT15_CUCME (DNA-directed RNA polymerase III subunit RPC3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484083 PE=4 SV=1)

HSP 1 Score: 714.1 bits (1842), Expect = 2.2e-202
Identity = 357/426 (83.80%), Postives = 394/426 (92.49%), Query Frame = 0


Query: 97  MRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNES 156
           MRFSKFLAIAS+KL +DK+C+ELLEGLLQNGRLSMEQ++ERA+SS  AGNRPIPDVV++S
Sbjct: 1   MRFSKFLAIASQKLGQDKNCQELLEGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDS 60

Query: 157 LLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEV 216
           L KLLNAHFVERCPAPEPTLSP+VEEQPPPRKRGAKAAK+ EVP TLEQRL+E+ARP+EV
Sbjct: 61  LFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEV 120

Query: 217 IRFSIGETNTEAEESEHYSSISGQKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHK 276
           +RFS+G+TN EAE+SEHYS ISGQKRK  +L+  Q+SG ADG ILWRAN+DEFIRCLRHK
Sbjct: 121 LRFSMGDTNPEAEKSEHYSQISGQKRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHK 180

Query: 277 ACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 336
           AC+EHVRSQFDDG VNVLSA LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL
Sbjct: 181 ACVEHVRSQFDDGVVNVLSAFLEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 240

Query: 337 DRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLV 396
           DRVEASL+ALGC GM+DYKINL++I+EQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLV
Sbjct: 241 DRVEASLAALGCPGMDDYKINLRRIVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 300

Query: 397 ETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 456
           ETEKISDS+FVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD
Sbjct: 301 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 360

Query: 457 EMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDAL 516
           EMYHASLNLQLR A+E+E++KELL+LP D    PL K+ +    VR LL SSL+KLDDAL
Sbjct: 361 EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDAL 420

Query: 517 MLFHDF 523
           MLFHDF
Sbjct: 421 MLFHDF 426

[Close]

BLAST of Carg22104 vs. TrEMBL
Match: tr|E0CV20|E0CV20_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0050g00450 PE=4 SV=1)

HSP 1 Score: 602.4 bits (1552), Expect = 9.4e-169
Identity = 314/527 (59.58%), Postives = 407/527 (77.23%), Query Frame = 0


Query: 3   STQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQH 62
           +TQYG++ AVH+I++HFGNLVAKVC+ LLR+G LTL  ++RFTEL   Q+ + +L+LIQH
Sbjct: 2   ATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQH 61

Query: 63  NCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEG 122
           NCVQAF    E  FG+AP+  TQY+ALF NILHRMRF+KFLAI SE+L  DK+CEE+LEG
Sbjct: 62  NCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEEL--DKECEEILEG 121

Query: 123 LLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQVEE 182
           LLQ+GRL++EQI++RAKS++  G   + D + ES LKL+ AHFVERCPA EP L+P  EE
Sbjct: 122 LLQHGRLTLEQILDRAKSNQSEGEPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEE 181

Query: 183 QPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFS-IGETNTEAEESEHYSSISGQK 242
           + P RKRGAK+AK+ E P T+EQR + +A PM+  RFS I  T T+ ++S + +  +G+K
Sbjct: 182 ETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPNVT--AGEK 241

Query: 243 RKRGDLDTIQESG-DADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAVNVLSAILEA 302
           RK+  L+  +E+G   +  +LWRANF+EF+RCLRHKACI +V+++ DDGA  VLSA+LEA
Sbjct: 242 RKQDALELDKETGASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLEA 301

Query: 303 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCS-----GMEDYK 362
           TRS EK VKTE +VPLS+D I+E VMK+E GRSMTL+RV  SL  LGC+       E Y 
Sbjct: 302 TRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESYS 361

Query: 363 INLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKI 422
           ++L+ IIE AQ DEVESI LKRYGRDAYR+FR LSK+  L+ET+KISD+ FV+K +  KI
Sbjct: 362 VDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKDTAKI 421

Query: 423 LYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQ 482
           LY+LWKDEYL MEK+ +   R S  LLW+V +  LW HVL+EMYH++LNL LR AYE+EQ
Sbjct: 422 LYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELEQ 481

Query: 483 DKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
           ++E++ LP +KR G L  R+ RLR VRILLESSL+KLDDA+MLF+DF
Sbjct: 482 EQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 524

[Close]

BLAST of Carg22104 vs. TrEMBL
Match: tr|A0A2I4FGN1|A0A2I4FGN1_9ROSI (DNA-directed RNA polymerase III subunit rpc-3 isoform X1 OS=Juglans regia OX=51240 GN=LOC108998635 PE=4 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 6.7e-167
Identity = 326/536 (60.82%), Postives = 407/536 (75.93%), Query Frame = 0


Query: 4   TQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILIQHN 63
           T+YGIK+ V++I  HFGNLVAKVCE LLRRGPLTL+L+VR+TEL+  Q+ NSLLILIQHN
Sbjct: 3   TEYGIKFTVNLINNHFGNLVAKVCENLLRRGPLTLQLIVRYTELTPQQVKNSLLILIQHN 62

Query: 64  CVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGL 123
           CVQAF+   +G   D PK++TQY+ALF+NILHRMRFSKFL I S   E D  C+ELLEGL
Sbjct: 63  CVQAFSYEQDGGLEDGPKSNTQYMALFNNILHRMRFSKFLEIISR--EFDDKCKELLEGL 122

Query: 124 LQNGRLSMEQIIERAKS-SKHAGNRPI----PDVVNESLLKLLNAHFVERCPAPEPTLSP 183
           LQ+GRL+++Q++ERAK  ++ A +R I     D+V ESL+KLL A +VERCPA EP L+ 
Sbjct: 123 LQHGRLTLKQMVERAKDMAERAKSRKIEGICEDLVQESLVKLLTARYVERCPASEPVLAA 182

Query: 184 QVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSIS 243
           + +E+ P +KRG K+A+ +E   TLEQR++ +A PM   RFS   TN E+  S   S+  
Sbjct: 183 RDKEETPAKKRGPKSARTAEESQTLEQRVLAAAAPMGAQRFS-AITNNESSVSRETSTDD 242

Query: 244 ------GQKRKRGDLDT-IQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGAV 303
                 G KRK   L+  I+ + + + ++LWRANF+EFIRCLRHKACIE+VR + DDGA 
Sbjct: 243 SPGMRVGAKRKYDALELHIEPAAEEEEVVLWRANFEEFIRCLRHKACIENVRERLDDGAA 302

Query: 304 NVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGM 363
            VL A+LEATRS E  VKTE +VPLSL+NI+EEVMK+E GR MTLDRV ASL  LGCS  
Sbjct: 303 TVLRAMLEATRSFENKVKTEKSVPLSLNNIFEEVMKSEEGRGMTLDRVRASLVQLGCSPS 362

Query: 364 -----EDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAF 423
                E YKI+L+KIIE AQ DEVESIVLKRYGRDAYRMFR LSK G LVET+KI+++ F
Sbjct: 363 ARGTDESYKIDLKKIIELAQNDEVESIVLKRYGRDAYRMFRLLSKNGCLVETDKIANTTF 422

Query: 424 VDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQ 483
           V+K +APKILY+LWKDEYL+MEK+ +   R S  LLW+V++  LW+HVLDEM+HA+LNL 
Sbjct: 423 VEKKDAPKILYKLWKDEYLHMEKLVVAGARQSQFLLWKVNKPCLWKHVLDEMFHAALNLS 482

Query: 484 LRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 523
            R AYE E++KE LNLP DK+    E+R NRL++VRI+LESSLLKL DA MLFHDF
Sbjct: 483 QRVAYEREKEKEFLNLPVDKQIMSQEERLNRLKSVRIVLESSLLKLGDAFMLFHDF 535

The following BLAST results are available for this feature:

BLAST of Carg22104 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945853.1	1.9e-293	99.62	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata]	[more]
XP_023541704.1	9.2e-293	99.43	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo]	[more]
XP_022968436.1	2.7e-292	99.23	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima]	[more]
XP_022141200.1	1.6e-268	90.61	uncharacterized protein LOC111011656 isoform X1 [Momordica charantia]	[more]
XP_008439232.1	4.9e-254	84.87	PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo...	[more]

BLAST of Carg22104 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49000.1	3.5e-129	46.83	RNA polymerase III subunit RPC82 family protein	[more]

BLAST of Carg22104 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9BUI4\|RPC3_HUMAN	6.3e-27	25.45	DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C P...	[more]
sp\|Q2TBL4\|RPC3_BOVIN	3.1e-26	25.71	DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=...	[more]
sp\|Q5XIL3\|RPC3_RAT	1.6e-25	24.24	DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Po...	[more]
sp\|Q9D483\|RPC3_MOUSE	5.0e-24	24.19	DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c ...	[more]
sp\|Q7ZUX1\|RPC3_DANRE	5.5e-23	23.60	DNA-directed RNA polymerase III subunit RPC3 OS=Danio rerio OX=7955 GN=polr3c PE...	[more]

BLAST of Carg22104 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYY3\|A0A1S3AYY3_CUCME	3.3e-254	84.87	DNA-directed RNA polymerase III subunit RPC3 isoform X1 OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A0A0LBF3\|A0A0A0LBF3_CUCSA	5.2e-252	84.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182170 PE=4 SV=1	[more]
tr\|A0A1S4DT15\|A0A1S4DT15_CUCME	2.2e-202	83.80	DNA-directed RNA polymerase III subunit RPC3 isoform X2 OS=Cucumis melo OX=3656 ...	[more]
tr\|E0CV20\|E0CV20_VITVI	9.4e-169	59.58	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0050g00450 PE=4 SV=...	[more]
tr\|A0A2I4FGN1\|A0A2I4FGN1_9ROSI	6.7e-167	60.82	DNA-directed RNA polymerase III subunit rpc-3 isoform X1 OS=Juglans regia OX=512...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR013197	RNA_pol_III_RPC82-rel_HTH
IPR008806	RNA_pol_III_Rpc82_C
IPR036388	WH-like_DNA-bd_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22104-RA	Carg22104-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 358..446 e-value: 7.5E-19 score: 69.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 3..76 e-value: 3.6E-18 score: 67.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 90..176 e-value: 5.5E-12 score: 47.5
IPR008806	RNA polymerase III Rpc82, C -terminal	PFAM	PF05645	RNA_pol_Rpc82	coord: 156..338 e-value: 4.9E-17 score: 62.4
IPR013197	RNA polymerase III subunit RPC82-related, helix-turn-helix	PFAM	PF08221	HTH_9	coord: 10..69 e-value: 1.3E-22 score: 79.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..246
None	No IPR available	PANTHER	PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	coord: 5..522

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22104	Cla006174	Watermelon (97103) v1	carwmB0736
Carg22104	Csa3G182170	Cucumber (Chinese Long) v2	carcuB0754
Carg22104	ClCG05G008100	Watermelon (Charleston Gray)	carwcgB0715
Carg22104	CSPI03G16990	Wild cucumber (PI 183967)	carcpiB0771
Carg22104	Cucsa.107850	Cucumber (Gy14) v1	carcgyB0828
Carg22104	CmaCh18G012490	Cucurbita maxima (Rimu)	carcmaB1032
Carg22104	CmoCh18G012720	Cucurbita moschata (Rifu)	carcmoB1003
Carg22104	Lsi05G012200	Bottle gourd (USVL1VR-Ls)	carlsiB675
Carg22104	Cp4.1LG09g00940	Cucurbita pepo (Zucchini)	carcpeB1038
Carg22104	CsGy3G017070	Cucumber (Gy14) v2	carcgybB0733
Carg22104	MELO3C031814.2	Melon (DHL92) v3.6.1	carmedB0743
Carg22104	CsaV3_3G017180	Cucumber (Chinese Long) v3	carcucB0774
Carg22104	Cla97C05G090150	Watermelon (97103) v2	carwmbB0772

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22104	Silver-seed gourd	carcarB583
Carg22104	Silver-seed gourd	carcarB594
Carg22104	Cucurbita maxima (Rimu)	carcmaB1031
Carg22104	Cucurbita moschata (Rifu)	carcmoB1002
Carg22104	Cucurbita pepo (Zucchini)	carcpeB1039
Carg22104	Melon (DHL92) v3.5.1	carmeB0732
Carg22104	Watermelon (97103) v2	carwmbB0773
Carg22104	Wax gourd	carwgoB0871
Carg22104	Wax gourd	carwgoB0872