Carg22093 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22093
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Adp-ribosylation factor-related protein 1
Location	Cucurbita_argyrosperma_scaffold_229 : 79392 .. 79816 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGATCTTTCTGAAGCAGTATCAGCTGAAGAACTTTCTCGTTATCTGGATCTTAAAAAACTGGATGAAAGAGTTTACATGTTTGAAGCTGTTTCTGGTTATGATGGGTACGTATATATATATCTTATTTACATAATCTCAAGAACACGAAAGTTCTTACGTAATGGGATTACGGGATGAGATCCAACATCGGTAGACATCTAATATATGCTTTATGCCTGCTTTTTATCCATTAAATTATCCTTCACCAGCAGAAAACATACTAGAAAGCTGAAATTCTTCATTGTTTTGATTCCAGGATGGGGATAAAGGACAGTGTTGAATGGTTAGTCGATATAATGGAAAGAAGTAAGAGAACCGAAACATTGAGAGCTCGAGCAGGTGCGGCGTCTTCTGATTCTGCTGCTTATATCCAAATATGA

mRNA sequence

ATGCAGGATCTTTCTGAAGCAGTATCAGCTGAAGAACTTTCTCGTTATCTGGATCTTAAAAAACTGGATGAAAGAGTTTACATGTTTGAAGCTGTTTCTGGTTATGATGGGATGGGGATAAAGGACAGTGTTGAATGGTTAGTCGATATAATGGAAAGAAGTAAGAGAACCGAAACATTGAGAGCTCGAGCAGGTGCGGCGTCTTCTGATTCTGCTGCTTATATCCAAATATGA

Coding sequence (CDS)

ATGCAGGATCTTTCTGAAGCAGTATCAGCTGAAGAACTTTCTCGTTATCTGGATCTTAAAAAACTGGATGAAAGAGTTTACATGTTTGAAGCTGTTTCTGGTTATGATGGGATGGGGATAAAGGACAGTGTTGAATGGTTAGTCGATATAATGGAAAGAAGTAAGAGAACCGAAACATTGAGAGCTCGAGCAGGTGCGGCGTCTTCTGATTCTGCTGCTTATATCCAAATATGA

Protein sequence

MQDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLRARAGAASSDSAAYIQI

Homology

[Close]

BLAST of Carg22093 vs. NCBI nr
Match: XP_022944816.1 (ADP-ribosylation factor-related protein 1 [Cucurbita moschata] >XP_022944817.1 ADP-ribosylation factor-related protein 1 [Cucurbita moschata] >XP_022944818.1 ADP-ribosylation factor-related protein 1 [Cucurbita moschata] >XP_023541415.1 ADP-ribosylation factor-related protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.7 bits (317), Expect = 3.4e-26
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 61
           QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR
Sbjct: 135 QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 194

Query: 62  ARAG 66
           ARAG
Sbjct: 195 ARAG 198

[Close]

BLAST of Carg22093 vs. NCBI nr
Match: XP_022968222.1 (ADP-ribosylation factor-related protein 1 [Cucurbita maxima] >XP_022968223.1 ADP-ribosylation factor-related protein 1 [Cucurbita maxima] >XP_022968224.1 ADP-ribosylation factor-related protein 1 [Cucurbita maxima])

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-26
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 61
           QDLSEAVSAEELSRYLDLKKLDER+YMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR
Sbjct: 135 QDLSEAVSAEELSRYLDLKKLDERIYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 194

Query: 62  ARAG 66
           ARAG
Sbjct: 195 ARAG 198

[Close]

BLAST of Carg22093 vs. NCBI nr
Match: XP_004140778.1 (PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 65/71 (91.55%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 61
           QDL EAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTE LR
Sbjct: 135 QDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTEILR 194

Query: 62  ARAGAASSDSA 73
           ARAG A   SA
Sbjct: 195 ARAGGAGLRSA 205

[Close]

BLAST of Carg22093 vs. NCBI nr
Match: XP_004140779.1 (PREDICTED: ADP-ribosylation factor-related protein 1 isoform X2 [Cucumis sativus] >KGN57362.1 hypothetical protein Csa_3G181980 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 6.4e-25
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 61
           QDL EAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTE LR
Sbjct: 135 QDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTEILR 194

Query: 62  ARAG 66
           ARAG
Sbjct: 195 ARAG 198

[Close]

BLAST of Carg22093 vs. NCBI nr
Match: XP_008439194.1 (PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis melo] >XP_008439195.1 PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis melo] >XP_016899043.1 PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 6.4e-25
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 61
           QDL EAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIK+SVEWLVDIMERSKRTE LR
Sbjct: 135 QDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKNSVEWLVDIMERSKRTEILR 194

Query: 62  ARAGAASSDSA 73
           ARAG A   SA
Sbjct: 195 ARAGGAGLRSA 205

[Close]

BLAST of Carg22093 vs. TAIR10
Match: AT5G52210.1 (GTP-binding protein 1)

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-25
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 61
           QDL+ AVSAEEL RYLDLKKLDERVYMFEAVSGYDG GIK+S+EWLV +ME+SKRTE+LR
Sbjct: 135 QDLTNAVSAEELDRYLDLKKLDERVYMFEAVSGYDGRGIKESIEWLVGVMEKSKRTESLR 194

Query: 62  ARAG 66
           ARAG
Sbjct: 195 ARAG 198

[Close]

BLAST of Carg22093 vs. Swiss-Prot
Match: sp|Q54UF1|ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum OX=44689 GN=arl2 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-04
Identity = 20/53 (37.74%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLV-DIMER 54
           QDL  A+++EE+S+YLDL++L+   +   + S   G+G+++ ++W+V DI+ R
Sbjct: 127 QDLDGAMTSEEISKYLDLEQLNTHHWEIMSCSAVTGLGLEEGIDWVVKDIVSR 179

[Close]

BLAST of Carg22093 vs. TrEMBL
Match: tr|A0A1S3AY63|A0A1S3AY63_CUCME (ADP-ribosylation factor-related protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484067 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.2e-25
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 61
           QDL EAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIK+SVEWLVDIMERSKRTE LR
Sbjct: 135 QDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKNSVEWLVDIMERSKRTEILR 194

Query: 62  ARAGAASSDSA 73
           ARAG A   SA
Sbjct: 195 ARAGGAGLRSA 205

[Close]

BLAST of Carg22093 vs. TrEMBL
Match: tr|A0A0A0L9R1|A0A0A0L9R1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181980 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.2e-25
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 61
           QDL EAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTE LR
Sbjct: 135 QDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTEILR 194

Query: 62  ARAG 66
           ARAG
Sbjct: 195 ARAG 198

[Close]

BLAST of Carg22093 vs. TrEMBL
Match: tr|A0A1S3AYV2|A0A1S3AYV2_CUCME (ADP-ribosylation factor-related protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484067 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.4e-25
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 61
           QDL EAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIK+SVEWLVDIMERSKRTE LR
Sbjct: 135 QDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKNSVEWLVDIMERSKRTEILR 194

Query: 62  ARAGAAS 69
           ARAG  S
Sbjct: 195 ARAGVRS 201

[Close]

BLAST of Carg22093 vs. TrEMBL
Match: tr|A0A2I4GGA9|A0A2I4GGA9_9ROSI (ADP-ribosylation factor-related protein 1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109007627 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.1e-24
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 61
           QDL+EAVSAEEL+RYLDLKKLDERVYMFE VS YDGMGIK+SVEWLVD MERSKRTETLR
Sbjct: 135 QDLAEAVSAEELARYLDLKKLDERVYMFEGVSAYDGMGIKESVEWLVDAMERSKRTETLR 194

Query: 62  ARAGAASSDSA 73
           ARAG   S +A
Sbjct: 195 ARAGVTGSATA 205

[Close]

BLAST of Carg22093 vs. TrEMBL
Match: tr|A0A2I4GGA0|A0A2I4GGA0_9ROSI (ADP-ribosylation factor-related protein 1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109007627 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.1e-24
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 2   QDLSEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWLVDIMERSKRTETLR 61
           QDL+EAVSAEEL+RYLDLKKLDERVYMFE VS YDGMGIK+SVEWLVD MERSKRTETLR
Sbjct: 112 QDLAEAVSAEELARYLDLKKLDERVYMFEGVSAYDGMGIKESVEWLVDAMERSKRTETLR 171

Query: 62  ARAGAASSDSA 73
           ARAG   S +A
Sbjct: 172 ARAGVTGSATA 182

The following BLAST results are available for this feature:

BLAST of Carg22093 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944816.1	3.4e-26	100.00	ADP-ribosylation factor-related protein 1 [Cucurbita moschata] >XP_022944817.1 A...	[more]
XP_022968222.1	4.4e-26	98.44	ADP-ribosylation factor-related protein 1 [Cucurbita maxima] >XP_022968223.1 ADP...	[more]
XP_004140778.1	1.7e-25	91.55	PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis sativus...	[more]
XP_004140779.1	6.4e-25	96.88	PREDICTED: ADP-ribosylation factor-related protein 1 isoform X2 [Cucumis sativus...	[more]
XP_008439194.1	6.4e-25	90.14	PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis melo] >...	[more]

BLAST of Carg22093 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52210.1	1.6e-25	84.38	GTP-binding protein 1	[more]

BLAST of Carg22093 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q54UF1\|ARL2_DICDI	3.2e-04	37.74	ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum OX=44689 GN=a...	[more]

BLAST of Carg22093 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AY63\|A0A1S3AY63_CUCME	4.2e-25	90.14	ADP-ribosylation factor-related protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0L9R1\|A0A0A0L9R1_CUCSA	4.2e-25	96.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181980 PE=3 SV=1	[more]
tr\|A0A1S3AYV2\|A0A1S3AYV2_CUCME	9.4e-25	92.54	ADP-ribosylation factor-related protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A2I4GGA9\|A0A2I4GGA9_9ROSI	6.1e-24	84.51	ADP-ribosylation factor-related protein 1-like isoform X1 OS=Juglans regia OX=51...	[more]
tr\|A0A2I4GGA0\|A0A2I4GGA0_9ROSI	6.1e-24	84.51	ADP-ribosylation factor-related protein 1-like isoform X2 OS=Juglans regia OX=51...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22093-RA	Carg22093-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 1..56 e-value: 9.1E-7 score: 30.5
None	No IPR available	PANTHER	PTHR11711:SF218	SUBFAMILY NOT NAMED	coord: 2..66
None	No IPR available	PANTHER	PTHR11711	ADP RIBOSYLATION FACTOR-RELATED	coord: 2..66

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22093	Lsi05G012400	Bottle gourd (USVL1VR-Ls)	carlsiB675

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22093	Silver-seed gourd	carcarB594
Carg22093	Cucumber (Gy14) v2	carcgybB0733
Carg22093	Cucumber (Gy14) v1	carcgyB0828
Carg22093	Cucurbita maxima (Rimu)	carcmaB1031
Carg22093	Cucurbita maxima (Rimu)	carcmaB1032
Carg22093	Cucurbita moschata (Rifu)	carcmoB1002
Carg22093	Cucurbita moschata (Rifu)	carcmoB1003
Carg22093	Cucurbita pepo (Zucchini)	carcpeB1038
Carg22093	Cucurbita pepo (Zucchini)	carcpeB1039
Carg22093	Wild cucumber (PI 183967)	carcpiB0771
Carg22093	Cucumber (Chinese Long) v2	carcuB0754
Carg22093	Cucumber (Chinese Long) v3	carcucB0774
Carg22093	Melon (DHL92) v3.5.1	carmeB0732
Carg22093	Melon (DHL92) v3.6.1	carmedB0743
Carg22093	Watermelon (Charleston Gray)	carwcgB0715
Carg22093	Watermelon (97103) v1	carwmB0736
Carg22093	Watermelon (97103) v2	carwmbB0772
Carg22093	Watermelon (97103) v2	carwmbB0773
Carg22093	Wax gourd	carwgoB0871
Carg22093	Wax gourd	carwgoB0872