Carg22047 (gene) Silver-seed gourd

Overview
NameCarg22047
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_175 : 318645 .. 321604 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTAGCGTGATCCTCCCAGAATTTTTCAGAATTTGTGGCGGTTTATGGTGTCCGTGGACAAACCCTCCTTTCAATTGAGGCGCAGCGATGGCGACGCACCTTCAAAGTTCCACTAAAATGGCCCTTCACGCTCCGGTTCTTCTAGCGCTCAGGGTAAGCTTGACGAGCCTTTATTCTCTTTCTCTTTATGAAGTATTTTCTGTGAAGCCTGAGTCAGTGGGTGGGATTATTAGAGCTCTGTTTCTAGCTTTCAAGAATGCATTTGTTTTGTTTCTCATTGTAGATTAAGCTAATTGGTGTTTGATTGAATTGGTGGAAGAATCTTGATACAAATTTGTGGGTGATGGTGATTGGAAAGTCCATAGCTCGTGCAGTGTTTACATTTCTGTGATGAATTTGCGTTTTGTTTTAAGGGATTTTCTACACCTCTAGTTGACTGTCGAACGGGCTTGAGGCCATTTACTTACCTTGTTGTGTTGAGGATTATTGGGAGAGGAGTCCTACGTCGGGTAATTAAGAGAGGTTGATCATGGGTTTATAAGTAAGAAATATATCTCCATTGGTATGGAAACCAAAAGCAAACCCATGAGAGCTTATGTTTAAAGTGGATAATGTCATATCATTGTGGAGAGTCGGGCACTTAACTTAACCATGTCAATAGAATCTTCAAATGTCGAACAAAGAAGTTGTGAGCCTTGAGGGTGTAGTCAAAAGTGACTCAAGTGTCGAATAAAGGGCGTGCTTTGTTCGAGGGCTCCTTAGAAGGAGTCGAGCCTCGATTAAAGGGAGGCTGTTCGAGAGCTCCATAGGTCTCAAGGGAGGCTATATGATGTGTTTTGTTTGAGGGGAGGATCGTTGAGGATTGTTGAGGATTGTTGAGGATTGTTGGGAGGGAGTCCTACATTGGCTAATTAAGGGGATGATCATGGGTTTATAAGTAAGGAATGCATCTCCATTGGTATGAGGCCTTTCGGGGAAACCAAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTAGACAGTATCATGTCATTGTGGAGAGTCGTGATCCCTAACATGGTATCAGAGTCATGCCTTTAACTTAACCATGTCAATAGAATCCTCAATTTTTGAACAAAGAAGTTGCGAGCCGCGAAGGTGTAGTCAAAAGTGACTAAGTGTCAAACAAAGGGTGTACTTATTTGAGGGCTCCTGAGAAGTAGTCGAGTCTTGATTAAGGGGAGGCTATTCTATAGGCTTCAGGGGAGGCTCTATGGTGTGCTTTGTTCGAGGGGACTCAGCCTCCTCACTGGCACATCGCCTGGTGTCTGACTCTGATACCATTTGTAATGGCCCAAACCCACTTCTAGCCGATATTGGCCTCTTTGGCCTTTCCCTTTCAAACTTCCTCTCAAAGTTTTTAAGACGTGTTTGTTAGAAAGAGGTTTCCATACCCTTATAAGAATGTTTCGTTATCCTCCCTAACCAATGTGGGATCTCACAATCCAATCCCCTTCGGGGTCCAGCGTCCTTGCTGGCATACTGCCTCGTGTCCACCGCCCTTCAGGGCTTAGTCTTCTCACTGGCACATCGCCCGGTGTCTGGCTCTGATACCATTTGTTACGCCCCAAACCCACCACTAGCAGATATTGTCCTCTTTGAGCTTCCTTTCAAGATTTTTAAAATGCGTTTGCCAGGGAGAGATTTCCACACCCTTATAAAGAATACTTCGTTCTCCTCCCTTAACTGATGTGAGATCTCATAGATCAAGCATTGATCTTTGTTATTGCATCGAAGCTTCAACAGAAACGACATAAATGATATTCGCAAGGATTGTTTGAACACGGTTTATTAGTCTTCCTAGTTTTCGACAATCTACATCGTCTATGAGGAAACCTTTTCATCTCAGACGCCTTAAACTGTAGTGGCAAACTTACATCAATGATTTGTGTGGGAAATTCAGCAGGTTTCTTGAGGCATTGTCTTATTGGGGTCGGATATTCATACCGCATTTTACTAATGGAGGTTTGTTTCGAACTCTATGGTCTTCGTTTCTCTGGTTTCGAAGACCTCGAAAGACATCGACGTTGCTGAAGCACAACAAGAAGGCGTAGAGAACATTGGACCAAGTATTACTTTACATTGGACCAGGTCTTCGTTTCTCTGGTTTCGAAGACCTCGAAAGACATCGACGTTGCTGAGGCACAACAAGAAGGCGTAGAGAACATTGGACCAGGTATTACTTTACTACTAGCAATCGACTCGATGCTTTTTAGTATCTAATTTCATTTTGATACTCCATGTGAGTAATTATGGCTCGGGTGCCTCGTTAAGAGGTTGAACTCGAGAGTAGCTTTGTTAGAGGATTGCTATCGAAAATGTTATTAGGGTATTAAGGGTATGGTAATAATTGGTTAGGGATGTTGTTACGGGGAGAAAGGGTAAAGTTAGGAGTCGATTTAGTTGGCTTAGGCTTGAGTGATTTCAAGAACGGTAGAGTCCAAGTACCACAAATTCTTTGGCTTCTCTGGTAGTTCTTTACTTCTTATTTTTTGAGTTTGATGACATATAGAGGTCGGGGATTCAAACCTCTGACCTCTTGACTGAAAGTATATCCCTTGACCAATTGAGCTTAGCTCGAATTGTATATGTCGATATCATCTTAGTTCTATCTGGTTCTCATCTCTCGTGTTGGTAGCTGGGTAACTTATGGACTTGTTTTCGATCAATTATCCTTGTTTTTGTGCAGATTACATTGCAGGCTTCATCAAAATGAAGTGTTCGATCGAGCGGGTGAACTGGTCGATAGGTTCTTATAGCACGAGACGGATTATGCTTCGGTGATGGACCTCCGAGATAAGCATTAAATGAAGTCTTAAAAAAATTGTGTATGTTTGAGAACAATCAAAATTTTAAAATCATGTCACCATAATTCATATTACCAAATTACCCCCAAAATAATGTTCGAATATCCCTATTGAT

mRNA sequence

TGCTAGCGTGATCCTCCCAGAATTTTTCAGAATTTGTGGCGGTTTATGGTGTCCGTGGACAAACCCTCCTTTCAATTGAGGCGCAGCGATGGCGACGCACCTTCAAAGTTCCACTAAAATGGCCCTTCACGCTCCGGTTCTTCTAGCGCTCAGGGTCTTCGTTTCTCTGGTTTCGAAGACCTCGAAAGACATCGACGTTGCTGAGGCACAACAAGAAGGCGTAGAGAACATTGGACCAGATTACATTGCAGGCTTCATCAAAATGAAGTGTTCGATCGAGCGGGTGAACTGGTCGATAGGTTCTTATAGCACGAGACGGATTATGCTTCGGTGATGGACCTCCGAGATAAGCATTAAATGAAGTCTTAAAAAAATTGTGTATGTTTGAGAACAATCAAAATTTTAAAATCATGTCACCATAATTCATATTACCAAATTACCCCCAAAATAATGTTCGAATATCCCTATTGAT

Coding sequence (CDS)

ATGGCGACGCACCTTCAAAGTTCCACTAAAATGGCCCTTCACGCTCCGGTTCTTCTAGCGCTCAGGGTCTTCGTTTCTCTGGTTTCGAAGACCTCGAAAGACATCGACGTTGCTGAGGCACAACAAGAAGGCGTAGAGAACATTGGACCAGATTACATTGCAGGCTTCATCAAAATGAAGTGTTCGATCGAGCGGGTGAACTGGTCGATAGGTTCTTATAGCACGAGACGGATTATGCTTCGGTGA

Protein sequence

MATHLQSSTKMALHAPVLLALRVFVSLVSKTSKDIDVAEAQQEGVENIGPDYIAGFIKMKCSIERVNWSIGSYSTRRIMLR
Homology
[Close]
BLAST of Carg22047 vs. NCBI nr
Match: XP_023554290.1 (uncharacterized protein LOC111811592 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 7.9e-10
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 15  APVLLALRVFVSLVSKTSKDIDVAEAQQEGVENIGPDYIAGFIKMK 61
           +P+L    VFVSLVSKTSKDID AEAQQEGVENIGPDY+A F KMK
Sbjct: 108 SPILKNSMVFVSLVSKTSKDIDAAEAQQEGVENIGPDYVADFTKMK 153

[Close]
BLAST of Carg22047 vs. NCBI nr
Match: XP_023554289.1 (uncharacterized protein LOC111811592 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-05
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 15  APVLLALRVFVSLVSKTSKDIDVAEAQQEGVENIGP 51
           +P+L    VFVSLVSKTSKDID AEAQQEGVENIGP
Sbjct: 108 SPILKNSMVFVSLVSKTSKDIDAAEAQQEGVENIGP 143

The following BLAST results are available for this feature:
BLAST of Carg22047 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023554290.17.9e-1078.26uncharacterized protein LOC111811592 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023554289.13.5e-0580.56uncharacterized protein LOC111811592 isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg22047 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg22047 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg22047 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22047-RACarg22047-RAmRNA