Carg22039 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22039
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_175 : 273410 .. 275885 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCAAACAGACCCAAAGCCCTCGCCCTTCCTCAATCCTCTTCGTCTTCCTCCGAACTCGGCGGTTGAAGACTCGCCGTCGCCCTCAAATCGGCCGAATCCGCCGGCGCTACGATGTCGTACGACGACGTGGAGATTGAAGACATGGAGTGGAATGAGGAACTGCAGGCCTTCACATACCCATGCCCTTGCGGCGACTTGTTCCAGATTACGAAGGAGGATCTTAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAGCTGTTCTCTTTACATCACAGTTATCTACAACATGGAAGATTTTCTTGGAGACTCTGATCAGAAGAATAACAAAGGACTTGAGCCCTCCAAACAACAGCCTATTGTTGTCGCTTGAGAATTCAGGTAATTAACCGATTGAAACTTCAGACTTGTTTATTGTCGCTGGTATGTTTTGATGCAATCGTTTTAGGTTACCTTGTTTATACGTTTATATTCTGATATGCCTTATGAATTTTAGAATATGATGCTTCCTCTCCAGCCTTCTGGAGGATGATTTCATTTGTTTAGTTATATAGCGTGAGAAAATTTCTAATTGCTTTGTCTCCTTTTCCCTGCGGTAAAATTGTTCAGAGATAAATTTGTGAAAATGAATACTTCTTCTGAAAGCATTATGCTATTGTGTTTGTGTTTCGCTCGTCTAGTCTTAAAGATTAACCATGTAAGGACATCATTTTGGTCATTTTTGGTACACTGTATTGAAGGCCTCATCATTTTCTCGATTTAACTTCTCTAACTAGAAGGTAGAAAGATGGAGGAAGTAGCTCTGGATGAATCTAAAACGCACACAATAAGATATCTTATCCCAGAAGCTCAGTAATTAGTTTGTAACCAAATGTGATCAGAGTAGACGTCGATTTCGGGATTGAGAAAAGAGAATATGTTTTGCTACTCCCCTAGGAGGACGATTTCAATTGGCTAGTTATATGGCTTAGTTCAATAGCTATGATCAGTTCATTACTCCGGAGAGACCTTAGCTTCAGTGGACAACCTGCGACTATGTTCTTTGTGTTGTGTTCTGTTGTGTTGTCTGCCGTATCAATTTTCTGAAGTCATGATCATATATGGAAAGTGTAGCGCTATCACTACAACCTGCCCTTTGTACACACTGCCTGGAATCGTTAAAATTGGGAAGCTCTGGCAGTTCTTCGAATGTTTTTCCTTTTAGTAATTTGAATTTATTACCTCTGTTTTCTGGGTTGTTTCACATGACCCTTCTTTTTACTTATCAAATGGAGCAATGTTTAGAGATGATTTCCTGAAAATGTATATTTTCCTAAGAGTTATACTTAATTGTGCGTGTTTTTGTTCGTCAACCGGTGACCATCTAAGGAAGTCTTTTTGGTCATTGTTCATATACCGTTTCTTATGCTTGTTTCCTAAGCAAAAAGATATATTGTATTTATAGGTTTGTCTTTTTTCACTCAACTTCTCCGACTTCAAGATCGAAAAATGGAGGAAGTAGCTCTGTTTCAATCTAGACCACTTTTAAGAATATATCTAGTCCTCTGGGTCTTTTGTGTTTGTGTTTAGTTTGTGACCATAAATATGTCATCAGTACAAGTCTCTAATTTTGTAGCAGAGAGATGCTCTAAAATCCATCAATTCATAGTTGGAATGGTCTTCTAATGTCTTTAGTTTCTTCTTCAACACAGAAATTATATTCTCTTAGCTTTATATGGATGCTACTTTTTGCAGAGTACTCGAATGTGAATCACGGTGTAACCACGACAGCTACACTTGTTGCAGATGAAATTTTGTCATCCATTGTTAATTCGGAGACGTTCGTCGCCATTATAGTTTCTTCTTTTTCTGTTGTTTTCTTCCCCACCCCTCGGAATCGATCTAGCAAACAGAGGAAAGTAGAGCTGCAGGCGAAAAAACGCATCAAAGTACTATTTTTGTTCCTTGAAAAAGTAATTTATAGATTCTTGATCTGTGCACAATCTAATGTTAATGAGTGGTGATTTCCTTGGTCGAACTTTCAGACATAGAATGGATGAAAAGCTGTAATGATCTAAATCTTTTGCTGTTCCTCATTTTTAGTTCTTCTACTTTGTGTATGGAAATTTCAGGACAATGACTTGTTTATTAGATTGAATTATGGATTGATCAAAGTGTATGAAGTCATCATCAAGAACATTCAGAGAATTCTGAGGAGGATAATGGGAGAGACAACAAAAACCCCTTCTTGGATAGGTTTCTCTTTCAAGGTGTATGCATTTACTTTCCTTCCTGAAGATTGAAGAACAGTATTATGAATGCTGCAAAAACAGAATGATTTTGAGCTGAAAAACAGCCTTTTCTTTCAACTCTTGAAGAATATGTTTTTCTTTAATTTTTTTTTTTTAAAATTATGTGATAATAAATTTGAATTTCTATCTGTAGTTCTTGATTGCTTAGATACTCGTAAGCGAGACTTATTTAGGTTGTATTATAAAT

mRNA sequence

GTCCAAACAGACCCAAAGCCCTCGCCCTTCCTCAATCCTCTTCGTCTTCCTCCGAACTCGGCGGTTGAAGACTCGCCGTCGCCCTCAAATCGGCCGAATCCGCCGGCGCTACGATGTCGTACGACGACGTGGAGATTGAAGACATGGAGTGGAATGAGGAACTGCAGGCCTTCACATACCCATGCCCTTGCGGCGACTTGTTCCAGATTACGAAGGAGGATCTTAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAGCTGTTCTCTTTACATCACAGTTATCTACAACATGGAAGATTTTCTTGGAGACTCTGATCAGAAGAATAACAAAGGACTTGAGCCCTCCAAACAACAGCCTATTGTTGTCGCTTGAGAATTCAGAGTACTCGAATGTGAATCACGGTGTAACCACGACAGCTACACTTGTTGCAGATGAAATTTTGTCATCCATTGTTAATTCGGAGACGTTCGTCGCCATTATAGTTTCTTCTTTTTCTGTTGTTTTCTTCCCCACCCCTCGGAATCGATCTAGCAAACAGAGGAAAGTAGAGCTGCAGGCGAAAAAACGCATCAAAGACAATGACTTGTTTATTAGATTGAATTATGGATTGATCAAAGTGTATGAAGTCATCATCAAGAACATTCAGAGAATTCTGAGGAGGATAATGGGAGAGACAACAAAAACCCCTTCTTGGATAGGTTTCTCTTTCAAGGTGTATGCATTTACTTTCCTTCCTGAAGATTGAAGAACAGTATTATGAATGCTGCAAAAACAGAATGATTTTGAGCTGAAAAACAGCCTTTTCTTTCAACTCTTGAAGAATATGTTTTTCTTTAATTTTTTTTTTTTAAAATTATGTGATAATAAATTTGAATTTCTATCTGTAGTTCTTGATTGCTTAGATACTCGTAAGCGAGACTTATTTAGGTTGTATTATAAAT

Coding sequence (CDS)

GTCCAAACAGACCCAAAGCCCTCGCCCTTCCTCAATCCTCTTCGTCTTCCTCCGAACTCGGCGGTTGAAGACTCGCCGTCGCCCTCAAATCGGCCGAATCCGCCGGCGCTACGATGTCGTACGACGACGTGGAGATTGAAGACATGGAGTGGAATGAGGAACTGCAGGCCTTCACATACCCATGCCCTTGCGGCGACTTGTTCCAGATTACGAAGGAGGATCTTAAGCTCGGTGAAGAGATTGCTCGGTGCCCTAGCTGTTCTCTTTACATCACAGTTATCTACAACATGGAAGATTTTCTTGGAGACTCTGATCAGAAGAATAACAAAGGACTTGAGCCCTCCAAACAACAGCCTATTGTTGTCGCTTGAGAATTCAGAGTACTCGAATGTGAATCACGGTGTAACCACGACAGCTACACTTGTTGCAGATGAAATTTTGTCATCCATTGTTAATTCGGAGACGTTCGTCGCCATTATAGTTTCTTCTTTTTCTGTTGTTTTCTTCCCCACCCCTCGGAATCGATCTAGCAAACAGAGGAAAGTAGAGCTGCAGGCGAAAAAACGCATCAAAGACAATGACTTGTTTATTAGATTGAATTATGGATTGATCAAAGTGTATGAAGTCATCATCAAGAACATTCAGAGAATTCTGAGGAGGATAATGGGAGAGACAACAAAAACCCCTTCTTGGATAGGTTTCTCTTTCAAGGTGTATGCATTTACTTTCCTTCCTGAAGATTGA

Protein sequence

VQTDPKPSPFLNPLRLPPNSAVEDSPSPSNRPNPPALRCRTTTWRLKTWSGMRNCRPSHTHALAATCSRLRRRILSSVKRLLGALAVLFTSQLSTTWKIFLETLIRRITKDLSPPNNSLLLSLENSEYSNVNHGVTTTATLVADEILSSIVNSETFVAIIVSSFSVVFFPTPRNRSSKQRKVELQAKKRIKDNDLFIRLNYGLIKVYEVIIKNIQRILRRIMGETTKTPSWIGFSFKVYAFTFLPED

Homology

[Close]

BLAST of Carg22039 vs. NCBI nr
Match: XP_022952988.1 (uncharacterized protein LOC111455502 [Cucurbita moschata])

HSP 1 Score: 253.4 bits (646), Expect = 7.7e-64
Identity = 140/146 (95.89%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 52  MRNCRPSHTHALAATCSRLRRRILSSVKRLLGALAVLFTSQLSTTWKIFLETLIRRITKD 111
           MRNCRPS THALAATCSRLRRRILSSVKRLLGALAVLFTSQLSTTWKIFLETLIRRITKD
Sbjct: 1   MRNCRPSRTHALAATCSRLRRRILSSVKRLLGALAVLFTSQLSTTWKIFLETLIRRITKD 60

Query: 112 LSPPNNSLLLSLENSEYSNVNHGVTTTATLVADEILSSIVNSETFVAIIVSSFSVVFFPT 171
           LSPPNNSL LSLENSEYSNVNHGVTTTATLVADEILSSIVNSETFVAIIVSSFSVVFFPT
Sbjct: 61  LSPPNNSLSLSLENSEYSNVNHGVTTTATLVADEILSSIVNSETFVAIIVSSFSVVFFPT 120

Query: 172 PRNRSSKQRKVELQAKKRIKDNDLFI 198
           PRNRSSKQRKVELQAKKRIK   LF+
Sbjct: 121 PRNRSSKQRKVELQAKKRIKVLFLFL 146

[Close]

BLAST of Carg22039 vs. NCBI nr
Match: XP_023554718.1 (uncharacterized protein LOC111811899 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 109/123 (88.62%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 52  MRNCRPSHTHALAATCSRLRRRILSSVKRLLGALAVLFTSQLSTTWKIFLETLIRRITKD 111
           MRNCRPS THA AATCSRLRRRILSSVKRLLGALAVLFTSQLSTTWKIF ETLIRRITKD
Sbjct: 1   MRNCRPSRTHARAATCSRLRRRILSSVKRLLGALAVLFTSQLSTTWKIFSETLIRRITKD 60

Query: 112 LSPPNNSLLLSLENSEYSNVNHGVTTTAT-LVADEILSSI-VNSETFVAIIVSSFSVVFF 171
            SPP+NSL LSL+NSE SN NHGVTTTAT +VADEILSSI V SETFVAIIVSSFS VFF
Sbjct: 61  FSPPSNSLSLSLDNSESSNANHGVTTTATHVVADEILSSIVVISETFVAIIVSSFSFVFF 120

Query: 172 PTP 173
           PTP
Sbjct: 121 PTP 123

[Close]

BLAST of Carg22039 vs. NCBI nr
Match: AFK49112.1 (unknown [Lotus japonicus])

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-11
Identity = 49/90 (54.44%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 42  TTWRLKTWSGMRNCRPSHTHALAATCSRLRRRILSSVKRLLGALAVLFTSQLSTTWKIFL 101
           TTWRL+TWSG RNCR + T   A TCSR RRR  S  K+ L ALA L TS  STTWK   
Sbjct: 2   TTWRLRTWSGTRNCRRTRTLVHAGTCSRSRRRTSSLAKKSLAALAALSTSPSSTTWKTSS 61

Query: 102 ETLIRRI-TKDLSPPNNSLLLSLENSEYSN 131
           E  I+ I T+  SPPNN L   LE   + N
Sbjct: 62  EIPIKIIETRVFSPPNNKLSPLLEFQVFHN 91

[Close]

BLAST of Carg22039 vs. NCBI nr
Match: CBI32521.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 71.6 bits (174), Expect = 4.1e-09
Identity = 52/120 (43.33%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 38  RCRTTTWRLKTWSGMRNCRPSHTHALAATCSRLRRRILSSVKRLLGALAVLFTSQLSTTW 97
           RCRTT WR KTWSG R+ +PS THA A T  RL R      KR L ALAVL +S  STTW
Sbjct: 12  RCRTTMWRSKTWSGTRSFKPSPTHARAETSFRLPRMSSEWAKRSLVALAVLSSSPSSTTW 71

Query: 98  KIFLETLIRRITKDLSPPNNSLLLSLENSEYSNVNHGVTTTATLVADEILSSIVNSETFV 157
           K  L   I    +  S  N+S LL  +NSE ++   G++  + ++A    +S+   E F+
Sbjct: 72  KTSLAVRIPIRRRVSSLRNSSRLLLPKNSELTHSLEGLSGVSGILA----ASVFGQELFL 127

[Close]

BLAST of Carg22039 vs. TrEMBL
Match: tr|I3T9C0|I3T9C0_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.7e-12
Identity = 49/90 (54.44%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 42  TTWRLKTWSGMRNCRPSHTHALAATCSRLRRRILSSVKRLLGALAVLFTSQLSTTWKIFL 101
           TTWRL+TWSG RNCR + T   A TCSR RRR  S  K+ L ALA L TS  STTWK   
Sbjct: 2   TTWRLRTWSGTRNCRRTRTLVHAGTCSRSRRRTSSLAKKSLAALAALSTSPSSTTWKTSS 61

Query: 102 ETLIRRI-TKDLSPPNNSLLLSLENSEYSN 131
           E  I+ I T+  SPPNN L   LE   + N
Sbjct: 62  EIPIKIIETRVFSPPNNKLSPLLEFQVFHN 91

[Close]

BLAST of Carg22039 vs. TrEMBL
Match: tr|F6HQH7|F6HQH7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0063g01730 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 41/83 (49.40%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 44  WRLKTWSGMRNCRPSHTHALAATCSRLRRRILSSVKRLLGALAVLFTSQLSTTWKIFLET 103
           WR KTWSG R+ +PS THA A T  RL R      KR L ALAVL +S  STTWK  L  
Sbjct: 2   WRSKTWSGTRSFKPSPTHARAETSFRLPRMSSEWAKRSLVALAVLSSSPSSTTWKTSLAV 61

Query: 104 LIRRITKDLSPPNNSLLLSLENS 127
            I    +  S  N+S LL  +NS
Sbjct: 62  RIPIRRRVSSLRNSSRLLLPKNS 84

The following BLAST results are available for this feature:

BLAST of Carg22039 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952988.1	7.7e-64	95.89	uncharacterized protein LOC111455502 [Cucurbita moschata]	[more]
XP_023554718.1	2.3e-44	88.62	uncharacterized protein LOC111811899 [Cucurbita pepo subsp. pepo]	[more]
AFK49112.1	1.2e-11	54.44	unknown [Lotus japonicus]	[more]
CBI32521.3	4.1e-09	43.33	unnamed protein product, partial [Vitis vinifera]	[more]

BLAST of Carg22039 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg22039 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22039 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|I3T9C0\|I3T9C0_LOTJA	7.7e-12	54.44	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
tr\|F6HQH7\|F6HQH7_VITVI	3.1e-05	49.40	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_03s0063g01730 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22039-RA	Carg22039-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22039	Cp4.1LG15g05050	Cucurbita pepo (Zucchini)	carcpeB0295

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22039	Cucumber (Gy14) v2	carcgybB0222
Carg22039	Cucumber (Gy14) v1	carcgyB0251
Carg22039	Cucurbita maxima (Rimu)	carcmaB0287
Carg22039	Cucurbita maxima (Rimu)	carcmaB0288
Carg22039	Cucurbita moschata (Rifu)	carcmoB0292
Carg22039	Cucurbita moschata (Rifu)	carcmoB0293
Carg22039	Cucurbita pepo (Zucchini)	carcpeB0296
Carg22039	Wild cucumber (PI 183967)	carcpiB0239
Carg22039	Cucumber (Chinese Long) v2	carcuB0233
Carg22039	Cucumber (Chinese Long) v3	carcucB0237
Carg22039	Bottle gourd (USVL1VR-Ls)	carlsiB185
Carg22039	Bottle gourd (USVL1VR-Ls)	carlsiB186
Carg22039	Melon (DHL92) v3.5.1	carmeB0213
Carg22039	Melon (DHL92) v3.6.1	carmedB0218
Carg22039	Watermelon (Charleston Gray)	carwcgB0203
Carg22039	Watermelon (97103) v1	carwmB0198
Carg22039	Watermelon (97103) v2	carwmbB0212
Carg22039	Wax gourd	carwgoB0260