Carg22026 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22026
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	hydroxyproline-rich glycoprotein family protein
Location	Cucurbita_argyrosperma_scaffold_175 : 172508 .. 172999 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCCGATCGAGCCACCATATCCGTGGTCGACGGACCGAATAGCGGTGGTTCATACGCTACAGTATTTGACATCGAACCAAATCCTGACGATCACCGGGGAAGTCAAGTGCCAACAATGTCGGAGAATTTACGAGATGGAATACGACGTTGTTTCGAAGTTTAACGAGATTGGGAGGTTCGTAGAGCACAAGATGGAGTCGTTCCGGGACCGGGCGCCGAAGGAGTGGATGCAGCCGAATTATCCGACGTGTCGGTTTTGCGGGGCGGAAAAAGGAGTGAAGCCGGTGATTCCAAAGGAATGGGAGAAGATCAATTGGGTGTTCTTGCTTTTGGGGGAAATGGTTGGAGCTTTGAAACTGAATCATTTGAAGTACTTTTGTAGTTACACGAAGAATCATCGAACAGGTTCAAAGGATCGTCTTGTTTATCTCACTTATATCACTTTGTGCCGCCAAATTGATCCTTCTGGTCGTTTCAGTCCAATTTGA

mRNA sequence

ATGGGGCCGATCGAGCCACCATATCCGTGGTCGACGGACCGAATAGCGGTGGTTCATACGCTACAGTATTTGACATCGAACCAAATCCTGACGATCACCGGGGAAGTCAAGTGCCAACAATGTCGGAGAATTTACGAGATGGAATACGACGTTGTTTCGAAGTTTAACGAGATTGGGAGGTTCGTAGAGCACAAGATGGAGTCGTTCCGGGACCGGGCGCCGAAGGAGTGGATGCAGCCGAATTATCCGACGTGTCGGTTTTGCGGGGCGGAAAAAGGAGTGAAGCCGGTGATTCCAAAGGAATGGGAGAAGATCAATTGGGTGTTCTTGCTTTTGGGGGAAATGGTTGGAGCTTTGAAACTGAATCATTTGAAGTACTTTTGTAGTTACACGAAGAATCATCGAACAGGTTCAAAGGATCGTCTTGTTTATCTCACTTATATCACTTTGTGCCGCCAAATTGATCCTTCTGGTCGTTTCAGTCCAATTTGA

Coding sequence (CDS)

ATGGGGCCGATCGAGCCACCATATCCGTGGTCGACGGACCGAATAGCGGTGGTTCATACGCTACAGTATTTGACATCGAACCAAATCCTGACGATCACCGGGGAAGTCAAGTGCCAACAATGTCGGAGAATTTACGAGATGGAATACGACGTTGTTTCGAAGTTTAACGAGATTGGGAGGTTCGTAGAGCACAAGATGGAGTCGTTCCGGGACCGGGCGCCGAAGGAGTGGATGCAGCCGAATTATCCGACGTGTCGGTTTTGCGGGGCGGAAAAAGGAGTGAAGCCGGTGATTCCAAAGGAATGGGAGAAGATCAATTGGGTGTTCTTGCTTTTGGGGGAAATGGTTGGAGCTTTGAAACTGAATCATTTGAAGTACTTTTGTAGTTACACGAAGAATCATCGAACAGGTTCAAAGGATCGTCTTGTTTATCTCACTTATATCACTTTGTGCCGCCAAATTGATCCTTCTGGTCGTTTCAGTCCAATTTGA

Protein sequence

MGPIEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRFVEHKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKLNHLKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFSPI

Homology

[Close]

BLAST of Carg22026 vs. NCBI nr
Match: XP_022952797.1 (uncharacterized protein LOC111455388 [Cucurbita moschata])

HSP 1 Score: 343.6 bits (880), Expect = 3.7e-91
Identity = 158/162 (97.53%), Postives = 159/162 (98.15%), Query Frame = 0


Query: 2   GPIEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRF 61
           GPIEPPYPWSTDRIAVVHTL YLTSNQILTITGEVKCQQCRRIYE+EYDVVSKFNEIG F
Sbjct: 64  GPIEPPYPWSTDRIAVVHTLHYLTSNQILTITGEVKCQQCRRIYEIEYDVVSKFNEIGSF 123

Query: 62  VEHKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKL 121
           VEH MESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKL
Sbjct: 124 VEHNMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKL 183

Query: 122 NHLKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFSPI 164
           NHLKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFSPI
Sbjct: 184 NHLKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFSPI 225

[Close]

BLAST of Carg22026 vs. NCBI nr
Match: XP_023511615.1 (uncharacterized protein LOC111776409 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.0 bits (863), Expect = 3.5e-89
Identity = 155/162 (95.68%), Postives = 159/162 (98.15%), Query Frame = 0


Query: 2   GPIEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRF 61
           G IEPPYPWSTDRIAVVHTL YLTSNQI+TITGEVKCQQCRRIYEMEYDVVSKFNEIGRF
Sbjct: 56  GRIEPPYPWSTDRIAVVHTLHYLTSNQIVTITGEVKCQQCRRIYEMEYDVVSKFNEIGRF 115

Query: 62  VEHKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKL 121
           VE+KMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGAL+L
Sbjct: 116 VENKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALRL 175

Query: 122 NHLKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFSPI 164
           NHLKYFCSYTKNHRTGSKDRLVYLTYITLCRQI PSGRF+PI
Sbjct: 176 NHLKYFCSYTKNHRTGSKDRLVYLTYITLCRQIHPSGRFTPI 217

[Close]

BLAST of Carg22026 vs. NCBI nr
Match: XP_022972401.1 (uncharacterized protein LOC111470968 [Cucurbita maxima])

HSP 1 Score: 333.2 bits (853), Expect = 5.0e-88
Identity = 153/162 (94.44%), Postives = 157/162 (96.91%), Query Frame = 0


Query: 2   GPIEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRF 61
           GPIEPPYPWSTDRIAVVHTL YLT NQILTITG+VKCQQCRRIYE+EY+VVSKFNEIG F
Sbjct: 55  GPIEPPYPWSTDRIAVVHTLHYLTLNQILTITGDVKCQQCRRIYEIEYNVVSKFNEIGSF 114

Query: 62  VEHKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKL 121
           VEH MESFRDRAPK+WMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKL
Sbjct: 115 VEHNMESFRDRAPKKWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKL 174

Query: 122 NHLKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFSPI 164
           NHLKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFS I
Sbjct: 175 NHLKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFSRI 216

[Close]

BLAST of Carg22026 vs. NCBI nr
Match: XP_008447299.1 (PREDICTED: uncharacterized protein LOC103489770 [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 112/160 (70.00%), Postives = 131/160 (81.88%), Query Frame = 0


Query: 4   IEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRFVE 63
           IEPPYPWST+R A+V TL  L S+QIL ITG+V+C+QC+  Y +EYD+VSKF EI  FVE
Sbjct: 70  IEPPYPWSTNRRAMVRTLNDLRSSQILQITGDVRCRQCQIEYTIEYDMVSKFEEIASFVE 129

Query: 64  HKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKLNH 123
                FRDRAP+ WM PNYPTCRFCG E G +PVIP EW KINW+FLLLGEM+G L LNH
Sbjct: 130 ENKNLFRDRAPRSWMNPNYPTCRFCGHENGARPVIPDEWRKINWLFLLLGEMLGVLNLNH 189

Query: 124 LKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFSPI 164
           LKYFCSYT NHRTG+K+RL+YLTYITLC Q+DPSGRF+ +
Sbjct: 190 LKYFCSYTNNHRTGAKNRLLYLTYITLCHQVDPSGRFNRV 229

[Close]

BLAST of Carg22026 vs. NCBI nr
Match: XP_011659748.1 (PREDICTED: uncharacterized protein LOC105436256 [Cucumis sativus] >KGN44335.1 hypothetical protein Csa_7G259350 [Cucumis sativus])

HSP 1 Score: 252.7 bits (644), Expect = 8.6e-64
Identity = 112/160 (70.00%), Postives = 131/160 (81.88%), Query Frame = 0


Query: 4   IEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRFVE 63
           IEPPYPWST+R A+V TL  L SNQIL ITG+V+C+QC+  Y +EYD+ SKF EI  FVE
Sbjct: 76  IEPPYPWSTNRRAMVRTLNDLKSNQILQITGDVQCRQCQVEYTIEYDMDSKFEEIASFVE 135

Query: 64  HKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKLNH 123
               SFRDRAP+ WM PNYPTCRFCG E G +PVIPK+W KINW+FLLLGEM+G L LNH
Sbjct: 136 ENKNSFRDRAPQSWMNPNYPTCRFCGHENGARPVIPKQWRKINWLFLLLGEMLGVLNLNH 195

Query: 124 LKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFSPI 164
           LKYFCS T NHRTG+K+RL+YLTYITLC Q+DPSGRF+ +
Sbjct: 196 LKYFCSNTYNHRTGAKNRLLYLTYITLCHQVDPSGRFNRV 235

[Close]

BLAST of Carg22026 vs. TAIR10
Match: AT1G49330.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 176.0 bits (445), Expect = 1.9e-44
Identity = 74/153 (48.37%), Postives = 106/153 (69.28%), Query Frame = 0


Query: 4   IEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRFVE 63
           I PP+PW+T+R   + +L+YL SNQI TITGEV+C+ C ++Y++ Y++  +F E+ +F  
Sbjct: 167 ISPPFPWATNRRGEIQSLEYLESNQITTITGEVQCRHCEKVYQVSYNLRERFAEVVKFYL 226

Query: 64  HKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKLNH 123
            +    RDRA K+W  P    C  CG EK VKPVI +   +INW+FLLLG+ +G   L  
Sbjct: 227 TEKRKMRDRAHKDWAYPEQRRCELCGREKAVKPVIAERKSQINWLFLLLGQTLGFCTLEQ 286

Query: 124 LKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDP 157
           LK FC ++KNHRTG+KDR++YLTY+ LC+ + P
Sbjct: 287 LKNFCKHSKNHRTGAKDRVLYLTYMGLCKMLQP 319

[Close]

BLAST of Carg22026 vs. TAIR10
Match: AT2G16190.1 (BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1))

HSP 1 Score: 161.8 bits (408), Expect = 3.6e-40
Identity = 71/158 (44.94%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 4   IEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRFVE 63
           I PPYPW+T +   + + + L+SN I  I+G+V C+ C R   +EY++  KF+E+  +++
Sbjct: 147 IVPPYPWATKKPGKIQSFRDLSSNNINVISGQVHCKTCDRTDTVEYNLEEKFSELYGYIK 206

Query: 64  HKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKLNH 123
              E  R RAP  W  P    CR C +E  +KPV+ +  E+INW+FLLLG+M+G   L+ 
Sbjct: 207 VNKEEMRHRAPGSWSTPKLIPCRTCKSE--MKPVMSERKEEINWLFLLLGQMLGCCTLDQ 266

Query: 124 LKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFS 162
           L+YFC     HRTGSKDR+VY+TY++LC+Q+DP G F+
Sbjct: 267 LRYFCQLNSKHRTGSKDRVVYITYLSLCKQLDPEGPFN 302

[Close]

BLAST of Carg22026 vs. TrEMBL
Match: tr|A0A1S3BHR1|A0A1S3BHR1_CUCME (uncharacterized protein LOC103489770 OS=Cucumis melo OX=3656 GN=LOC103489770 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.1e-64
Identity = 112/160 (70.00%), Postives = 131/160 (81.88%), Query Frame = 0


Query: 4   IEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRFVE 63
           IEPPYPWST+R A+V TL  L S+QIL ITG+V+C+QC+  Y +EYD+VSKF EI  FVE
Sbjct: 70  IEPPYPWSTNRRAMVRTLNDLRSSQILQITGDVRCRQCQIEYTIEYDMVSKFEEIASFVE 129

Query: 64  HKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKLNH 123
                FRDRAP+ WM PNYPTCRFCG E G +PVIP EW KINW+FLLLGEM+G L LNH
Sbjct: 130 ENKNLFRDRAPRSWMNPNYPTCRFCGHENGARPVIPDEWRKINWLFLLLGEMLGVLNLNH 189

Query: 124 LKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFSPI 164
           LKYFCSYT NHRTG+K+RL+YLTYITLC Q+DPSGRF+ +
Sbjct: 190 LKYFCSYTNNHRTGAKNRLLYLTYITLCHQVDPSGRFNRV 229

[Close]

BLAST of Carg22026 vs. TrEMBL
Match: tr|A0A0A0K3Q8|A0A0A0K3Q8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G259350 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 5.7e-64
Identity = 112/160 (70.00%), Postives = 131/160 (81.88%), Query Frame = 0


Query: 4   IEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRFVE 63
           IEPPYPWST+R A+V TL  L SNQIL ITG+V+C+QC+  Y +EYD+ SKF EI  FVE
Sbjct: 76  IEPPYPWSTNRRAMVRTLNDLKSNQILQITGDVQCRQCQVEYTIEYDMDSKFEEIASFVE 135

Query: 64  HKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKLNH 123
               SFRDRAP+ WM PNYPTCRFCG E G +PVIPK+W KINW+FLLLGEM+G L LNH
Sbjct: 136 ENKNSFRDRAPQSWMNPNYPTCRFCGHENGARPVIPKQWRKINWLFLLLGEMLGVLNLNH 195

Query: 124 LKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRFSPI 164
           LKYFCS T NHRTG+K+RL+YLTYITLC Q+DPSGRF+ +
Sbjct: 196 LKYFCSNTYNHRTGAKNRLLYLTYITLCHQVDPSGRFNRV 235

[Close]

BLAST of Carg22026 vs. TrEMBL
Match: tr|A0A1S3YXJ5|A0A1S3YXJ5_TOBAC (uncharacterized protein LOC107780834 OS=Nicotiana tabacum OX=4097 GN=LOC107780834 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.1e-50
Identity = 87/157 (55.41%), Postives = 118/157 (75.16%), Query Frame = 0


Query: 4   IEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRFVE 63
           I PP+PW+T+R A +HTL YL S Q+ TI+G+V+C++C R Y+ME+D+  KF EIG ++ 
Sbjct: 128 IPPPFPWATNRRATIHTLDYLLSKQLFTISGDVQCKRCERKYQMEFDLREKFVEIGTYIA 187

Query: 64  HKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKLNH 123
               +  DRAP  WM P  PTC+FC  E  VKP+I +E   INW+FLLLG+M+G   L+ 
Sbjct: 188 ENKAAMHDRAPDIWMNPLLPTCQFCKQENSVKPIISEEKSSINWLFLLLGKMLGCCTLDD 247

Query: 124 LKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRF 161
           LKYFC +TKNHRTG+KDR++YLTY+TLC+Q+DP+G F
Sbjct: 248 LKYFCEHTKNHRTGAKDRVLYLTYLTLCKQLDPNGPF 284

[Close]

BLAST of Carg22026 vs. TrEMBL
Match: tr|A0A1S4C9M7|A0A1S4C9M7_TOBAC (uncharacterized protein LOC107816455 OS=Nicotiana tabacum OX=4097 GN=LOC107816455 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.0e-49
Identity = 87/157 (55.41%), Postives = 118/157 (75.16%), Query Frame = 0


Query: 4   IEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRFVE 63
           I PP+PW+T+R A VHTL YL S Q+ TI+G+V+C++C R Y++EYD+  KF EIG ++ 
Sbjct: 126 IPPPFPWATNRRATVHTLDYLLSKQLFTISGDVQCKRCERKYQLEYDLREKFLEIGTYIA 185

Query: 64  HKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKLNH 123
               +  DRAP  WM P  PTC+FC  E  VKP+I ++   INW+FLLLG+M+G   L+ 
Sbjct: 186 ENKAAMHDRAPDIWMNPLLPTCQFCKQENSVKPIISEDKCTINWLFLLLGKMLGCCTLDD 245

Query: 124 LKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRF 161
           LKYFC +TKNHRTG+KDR++YLTY+TLC+Q+DP+G F
Sbjct: 246 LKYFCEHTKNHRTGAKDRVLYLTYLTLCKQLDPNGPF 282

[Close]

BLAST of Carg22026 vs. TrEMBL
Match: tr|A0A1U7XJD4|A0A1U7XJD4_NICSY (uncharacterized protein LOC104235071 OS=Nicotiana sylvestris OX=4096 GN=LOC104235071 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.0e-49
Identity = 87/157 (55.41%), Postives = 118/157 (75.16%), Query Frame = 0


Query: 4   IEPPYPWSTDRIAVVHTLQYLTSNQILTITGEVKCQQCRRIYEMEYDVVSKFNEIGRFVE 63
           I PP+PW+T+R A VHTL YL S Q+ TI+G+V+C++C R Y++EYD+  KF EIG ++ 
Sbjct: 126 IPPPFPWATNRRATVHTLDYLLSKQLFTISGDVQCKRCERKYQLEYDLREKFLEIGTYIA 185

Query: 64  HKMESFRDRAPKEWMQPNYPTCRFCGAEKGVKPVIPKEWEKINWVFLLLGEMVGALKLNH 123
               +  DRAP  WM P  PTC+FC  E  VKP+I ++   INW+FLLLG+M+G   L+ 
Sbjct: 186 ENKAAMHDRAPDIWMNPLLPTCQFCKQENSVKPIISEDKCTINWLFLLLGKMLGCCTLDD 245

Query: 124 LKYFCSYTKNHRTGSKDRLVYLTYITLCRQIDPSGRF 161
           LKYFC +TKNHRTG+KDR++YLTY+TLC+Q+DP+G F
Sbjct: 246 LKYFCEHTKNHRTGAKDRVLYLTYLTLCKQLDPNGPF 282

The following BLAST results are available for this feature:

BLAST of Carg22026 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952797.1	3.7e-91	97.53	uncharacterized protein LOC111455388 [Cucurbita moschata]	[more]
XP_023511615.1	3.5e-89	95.68	uncharacterized protein LOC111776409 [Cucurbita pepo subsp. pepo]	[more]
XP_022972401.1	5.0e-88	94.44	uncharacterized protein LOC111470968 [Cucurbita maxima]	[more]
XP_008447299.1	1.7e-64	70.00	PREDICTED: uncharacterized protein LOC103489770 [Cucumis melo]	[more]
XP_011659748.1	8.6e-64	70.00	PREDICTED: uncharacterized protein LOC105436256 [Cucumis sativus] >KGN44335.1 hy...	[more]

BLAST of Carg22026 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49330.1	1.9e-44	48.37	hydroxyproline-rich glycoprotein family protein	[more]
AT2G16190.1	3.6e-40	44.94	BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein fam...	[more]

BLAST of Carg22026 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg22026 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHR1\|A0A1S3BHR1_CUCME	1.1e-64	70.00	uncharacterized protein LOC103489770 OS=Cucumis melo OX=3656 GN=LOC103489770 PE=...	[more]
tr\|A0A0A0K3Q8\|A0A0A0K3Q8_CUCSA	5.7e-64	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G259350 PE=4 SV=1	[more]
tr\|A0A1S3YXJ5\|A0A1S3YXJ5_TOBAC	2.1e-50	55.41	uncharacterized protein LOC107780834 OS=Nicotiana tabacum OX=4097 GN=LOC10778083...	[more]
tr\|A0A1S4C9M7\|A0A1S4C9M7_TOBAC	1.0e-49	55.41	uncharacterized protein LOC107816455 OS=Nicotiana tabacum OX=4097 GN=LOC10781645...	[more]
tr\|A0A1U7XJD4\|A0A1U7XJD4_NICSY	1.0e-49	55.41	uncharacterized protein LOC104235071 OS=Nicotiana sylvestris OX=4096 GN=LOC10423...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22026-RA	Carg22026-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34272:SF1	F13F21.24 PROTEIN	coord: 4..160
None	No IPR available	PANTHER	PTHR34272	FAMILY NOT NAMED	coord: 4..160

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22026	Cucumber (Gy14) v2	carcgybB0223
Carg22026	Cucumber (Gy14) v1	carcgyB0252
Carg22026	Cucurbita maxima (Rimu)	carcmaB0288
Carg22026	Cucurbita moschata (Rifu)	carcmoB0293
Carg22026	Cucurbita pepo (Zucchini)	carcpeB0295
Carg22026	Cucumber (Chinese Long) v2	carcuB0234
Carg22026	Cucumber (Chinese Long) v3	carcucB0238
Carg22026	Bottle gourd (USVL1VR-Ls)	carlsiB185
Carg22026	Bottle gourd (USVL1VR-Ls)	carlsiB186
Carg22026	Melon (DHL92) v3.5.1	carmeB0214
Carg22026	Melon (DHL92) v3.6.1	carmedB0219
Carg22026	Watermelon (Charleston Gray)	carwcgB0203
Carg22026	Watermelon (97103) v1	carwmB0198
Carg22026	Watermelon (97103) v2	carwmbB0212
Carg22026	Wax gourd	carwgoB0260
Carg22026	Wild cucumber (PI 183967)	carcpiB0240