Carg21966 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21966
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	PRA1 family protein
Location	Cucurbita_argyrosperma_scaffold_180 : 301346 .. 301945 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACGTATGGAACAATCCCGACGGAGCCAGTCCCTTTATCGAACCTGCATTCCACTTCTCGTGCAAGAGAGCGCATTGCGTCGTGCCTCGGCACGCAAAGGCCATGGATGGAGATGATCCAGCTTCAAGACCTGACCTTCCCCGCATCCTCTAAGCAGCTAATCAACAGAATTAAGAACAATGCAGAGTTCTTCTGGACCAATTACATTCTCATCATATTATTCATCCTCTTTCTAAGTTTGCTATGGCAACCCATTTCATTTATGGTCTTCATCATCTCATTGTTGGCTTGGCTGTACTTATATTTCTTACACGACGAACCCTTTGTGATTCGGGGCAGGGCGGTCGACGATCGATTGGTGATGGTGGTTTTGAGTTTAGTCACCGTTGCATTGCTTTTCTTTACGCATGCGACTAAAAACATTATAATTTCTATGTCCATTGGGGTGGTGGTGGTGTTTGTGCATGGAGCATTGAAAGGAAGTGAGGATATTTTCTCTTTGGATGAAGAAGGTTTATCAGAATGTGCAGGTGGAAGAGGTGTCATCAAGATGCCTCTCAAGCACGCTGCCTCTGCTTCTTTCTCCCTATCATAG

mRNA sequence

ATGGCAACGTATGGAACAATCCCGACGGAGCCAGTCCCTTTATCGAACCTGCATTCCACTTCTCGTGCAAGAGAGCGCATTGCGTCGTGCCTCGGCACGCAAAGGCCATGGATGGAGATGATCCAGCTTCAAGACCTGACCTTCCCCGCATCCTCTAAGCAGCTAATCAACAGAATTAAGAACAATGCAGAGTTCTTCTGGACCAATTACATTCTCATCATATTATTCATCCTCTTTCTAAGTTTGCTATGGCAACCCATTTCATTTATGGTCTTCATCATCTCATTGTTGGCTTGGCTGTACTTATATTTCTTACACGACGAACCCTTTGTGATTCGGGGCAGGGCGGTCGACGATCGATTGGTGATGGTGGTTTTGAGTTTAGTCACCGTTGCATTGCTTTTCTTTACGCATGCGACTAAAAACATTATAATTTCTATGTCCATTGGGGTGGTGGTGGTGTTTGTGCATGGAGCATTGAAAGGAAGTGAGGATATTTTCTCTTTGGATGAAGAAGGTTTATCAGAATGTGCAGGTGGAAGAGGTGTCATCAAGATGCCTCTCAAGCACGCTGCCTCTGCTTCTTTCTCCCTATCATAG

Coding sequence (CDS)

ATGGCAACGTATGGAACAATCCCGACGGAGCCAGTCCCTTTATCGAACCTGCATTCCACTTCTCGTGCAAGAGAGCGCATTGCGTCGTGCCTCGGCACGCAAAGGCCATGGATGGAGATGATCCAGCTTCAAGACCTGACCTTCCCCGCATCCTCTAAGCAGCTAATCAACAGAATTAAGAACAATGCAGAGTTCTTCTGGACCAATTACATTCTCATCATATTATTCATCCTCTTTCTAAGTTTGCTATGGCAACCCATTTCATTTATGGTCTTCATCATCTCATTGTTGGCTTGGCTGTACTTATATTTCTTACACGACGAACCCTTTGTGATTCGGGGCAGGGCGGTCGACGATCGATTGGTGATGGTGGTTTTGAGTTTAGTCACCGTTGCATTGCTTTTCTTTACGCATGCGACTAAAAACATTATAATTTCTATGTCCATTGGGGTGGTGGTGGTGTTTGTGCATGGAGCATTGAAAGGAAGTGAGGATATTTTCTCTTTGGATGAAGAAGGTTTATCAGAATGTGCAGGTGGAAGAGGTGTCATCAAGATGCCTCTCAAGCACGCTGCCTCTGCTTCTTTCTCCCTATCATAG

Protein sequence

MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIKNNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDRLVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGGRGVIKMPLKHAASASFSLS

Homology

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BLAST of Carg21966 vs. NCBI nr
Match: XP_022925984.1 (PRA1 family protein F2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 377.1 bits (967), Expect = 3.7e-101
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60
           MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK
Sbjct: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60

Query: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120
           NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR
Sbjct: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120

Query: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180
           LVMVVLSLVTVALLFFTHATKNIIISMSIGVV+VFVHGALKGSEDIFSLDEEGLSECAGG
Sbjct: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVMVFVHGALKGSEDIFSLDEEGLSECAGG 180

Query: 181 RGVIKMPLKHAASASFSLS 200
           RGVIKMPLKHAASASFSLS
Sbjct: 181 RGVIKMPLKHAASASFSLS 199

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BLAST of Carg21966 vs. NCBI nr
Match: XP_023530325.1 (PRA1 family protein F2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 376.7 bits (966), Expect = 4.8e-101
Identity = 197/199 (98.99%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60
           MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK
Sbjct: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60

Query: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120
           NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR
Sbjct: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120

Query: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180
           LVMVVL+L+TVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG
Sbjct: 121 LVMVVLTLITVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180

Query: 181 RGVIKMPLKHAASASFSLS 200
           RGVIKMPLKHAASASFSLS
Sbjct: 181 RGVIKMPLKHAASASFSLS 199

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BLAST of Carg21966 vs. NCBI nr
Match: XP_022973348.1 (PRA1 family protein F2-like isoform X1 [Cucurbita maxima] >XP_022973351.1 PRA1 family protein F2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 375.2 bits (962), Expect = 1.4e-100
Identity = 196/199 (98.49%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60
           MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK
Sbjct: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60

Query: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120
           NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGR VDDR
Sbjct: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRTVDDR 120

Query: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180
           LVMVVL+L+TVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG
Sbjct: 121 LVMVVLTLITVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180

Query: 181 RGVIKMPLKHAASASFSLS 200
           RGVIKMPLKHAASASFSLS
Sbjct: 181 RGVIKMPLKHAASASFSLS 199

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BLAST of Carg21966 vs. NCBI nr
Match: XP_008450846.1 (PREDICTED: PRA1 family protein C [Cucumis melo])

HSP 1 Score: 301.6 bits (771), Expect = 2.0e-78
Identity = 158/199 (79.40%), Postives = 172/199 (86.43%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60
           M TYGTIPTEP+P SNLH TSRARERIAS LG +RPWMEMIQ QDL+FP+S  QLINRI+
Sbjct: 1   MGTYGTIPTEPLPSSNLHYTSRARERIASALGKRRPWMEMIQPQDLSFPSSFLQLINRIE 60

Query: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120
           NNAE+FWTNYI IILFILFLSLLWQPIS +VFIIS LAWLYLYFLHDEP+V+RG  VDD+
Sbjct: 61  NNAEYFWTNYIFIILFILFLSLLWQPISLVVFIISFLAWLYLYFLHDEPWVVRGSIVDDQ 120

Query: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180
           LVMVVL L+       T ATKNIIISM +GV+VVFVHGALKGSED  SLDEEGLSEC GG
Sbjct: 121 LVMVVLMLIXXXXXXITDATKNIIISMFVGVLVVFVHGALKGSEDALSLDEEGLSECGGG 180

Query: 181 RGVIKMPLKHAASASFSLS 200
           RGVIKMPLKHAAS+SFS S
Sbjct: 181 RGVIKMPLKHAASSSFSRS 199

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BLAST of Carg21966 vs. NCBI nr
Match: XP_004135817.1 (PREDICTED: PRA1 family protein F2 [Cucumis sativus] >KGN66230.1 hypothetical protein Csa_1G587410 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 4.9e-77
Identity = 157/199 (78.89%), Postives = 169/199 (84.92%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60
           M TYGTIPTEPVPLSNLH TSRARERIAS LG +RPWMEMIQ QDL+FP S  QLINRIK
Sbjct: 1   MGTYGTIPTEPVPLSNLHYTSRARERIASALGKRRPWMEMIQPQDLSFPTSFLQLINRIK 60

Query: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120
           NNAE+FWTNYILI+LFILFLSLLWQPIS +VFIIS LAWLYLYFLHDEP+V+RG  VDD+
Sbjct: 61  NNAEYFWTNYILIVLFILFLSLLWQPISLVVFIISFLAWLYLYFLHDEPWVVRGSIVDDQ 120

Query: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180
           LVMVVL             T NIIISM +GV+VVFVHGALKGSED FSLDEEGLSE  GG
Sbjct: 121 LVMVVLMXXXXXXXXXXXXTMNIIISMFVGVLVVFVHGALKGSEDAFSLDEEGLSEYGGG 180

Query: 181 RGVIKMPLKHAASASFSLS 200
           RGV+KMPLKHAAS+SFSLS
Sbjct: 181 RGVVKMPLKHAASSSFSLS 199

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BLAST of Carg21966 vs. TAIR10
Match: AT1G55190.1 (PRA1 (Prenylated rab acceptor) family protein)

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-34
Identity = 82/183 (44.81%), Postives = 116/183 (63.39%), Query Frame = 0


Query: 1   MATYGTIPT--EPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINR 60
           M  YG IPT   P P  +L   SRA+ RI S L T+RPW  M   + +T P      I+R
Sbjct: 1   MTNYGAIPTSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISR 60

Query: 61  IKNNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVD 120
           IK N  +F  NY + +LFILFLSLL+ P S +V  I ++ W++LYFL DEP V+ G  +D
Sbjct: 61  IKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQID 120

Query: 121 DRLVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEE--GLSE 180
           DR V++ LS++TV +L  THAT NI+ S+    V+V +H A++ S+++F LDEE   ++E
Sbjct: 121 DRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLF-LDEEAAAVTE 180

[Close]

BLAST of Carg21966 vs. TAIR10
Match: AT3G13720.1 (PRA1 (Prenylated rab acceptor) family protein)

HSP 1 Score: 132.1 bits (331), Expect = 3.8e-31
Identity = 70/181 (38.67%), Postives = 108/181 (59.67%), Query Frame = 0


Query: 1   MATYGTIPT--EPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINR 60
           M  YG IPT     PL ++ S SRA+ RI + L T+R W  M     +  P        R
Sbjct: 1   MTNYGAIPTSSHASPLVDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTR 60

Query: 61  IKNNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVD 120
           IK N  +F  NY +++L ++F SL+W P S +VF + ++ W++LYFL DEP  +    +D
Sbjct: 61  IKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQID 120

Query: 121 DRLVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECA 180
           DR V++VLS++TV LL  T+AT NI+ ++  G V+V +H  ++ +ED+F  +E   +E +
Sbjct: 121 DRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAATTETS 180

[Close]

BLAST of Carg21966 vs. TAIR10
Match: AT1G17700.1 (prenylated RAB acceptor 1.F1)

HSP 1 Score: 127.9 bits (320), Expect = 7.1e-30
Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNL--HSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINR 60
           M TYGT       L+    + T    +   S L T+RPW +M+ L    FP     +I R
Sbjct: 1   MTTYGTNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITR 60

Query: 61  IKNNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVD 120
           I+ N  +F TNY +++LF +FLSL+W P S +V +  L AWL+LYFL DEP  +  R +D
Sbjct: 61  IRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREID 120

Query: 121 DRLVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEE 173
            R+V++++S++T+++LF T A  NI +++  G + V  H A++ +ED+F  DEE
Sbjct: 121 HRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEE 174

[Close]

BLAST of Carg21966 vs. TAIR10
Match: AT3G13710.1 (prenylated RAB acceptor 1.F4)

HSP 1 Score: 118.2 bits (295), Expect = 5.6e-27
Identity = 63/174 (36.21%), Postives = 101/174 (58.05%), Query Frame = 0


Query: 6   TIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIKNNAEF 65
           T  +   P  N  S SRA++RI   L T+R W  M  L     P     + +RIK N  +
Sbjct: 8   TTSSHASPAVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAY 67

Query: 66  FWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDRLVMVV 125
           F +NY ++IL ++F SL+W P S +VF   +  W++LYFL D P  +    +DDR V++ 
Sbjct: 68  FRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIG 127

Query: 126 LSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAG 180
           LS++T+ LL  T+AT NI+ ++  G V+V +H  ++ ++D+F  +E   +E +G
Sbjct: 128 LSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAATTETSG 181

[Close]

BLAST of Carg21966 vs. TAIR10
Match: AT1G08770.1 (prenylated RAB acceptor 1.E)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-25
Identity = 61/155 (39.35%), Postives = 102/155 (65.81%), Query Frame = 0


Query: 20  TSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIKNNAEFFWTNYILIILFILF 79
           ++RA++   S + T RPW E++ L  L+ P    + +  +K+N  +F  NY L +L I+F
Sbjct: 33  SARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVF 92

Query: 80  LSLLWQPISFMVFIISLLAWLYLYFLHD--EPFVIRGRAVDDRLVMVVLSLVTVALLFFT 139
           L L++ P+S + FI+  + W+ LYF  D  +  VI G+ VDD++V+V+LSLVTV  L +T
Sbjct: 93  LGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYT 152

Query: 140 HATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEE 173
              +N+++S+ IG+++V  HGA + ++D+F LDEE
Sbjct: 153 DVGENVLVSLIIGLLIVGAHGAFRNTDDLF-LDEE 186

[Close]

BLAST of Carg21966 vs. Swiss-Prot
Match: sp|Q9C889|PR1F2_ARATH (PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.6e-33
Identity = 82/183 (44.81%), Postives = 116/183 (63.39%), Query Frame = 0


Query: 1   MATYGTIPT--EPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINR 60
           M  YG IPT   P P  +L   SRA+ RI S L T+RPW  M   + +T P      I+R
Sbjct: 1   MTNYGAIPTSSHPSPAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISR 60

Query: 61  IKNNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVD 120
           IK N  +F  NY + +LFILFLSLL+ P S +V  I ++ W++LYFL DEP V+ G  +D
Sbjct: 61  IKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQID 120

Query: 121 DRLVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEE--GLSE 180
           DR V++ LS++TV +L  THAT NI+ S+    V+V +H A++ S+++F LDEE   ++E
Sbjct: 121 DRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLF-LDEEAAAVTE 180

[Close]

BLAST of Carg21966 vs. Swiss-Prot
Match: sp|Q9LIC6|PR1F3_ARATH (PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.8e-30
Identity = 70/181 (38.67%), Postives = 108/181 (59.67%), Query Frame = 0


Query: 1   MATYGTIPT--EPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINR 60
           M  YG IPT     PL ++ S SRA+ RI + L T+R W  M     +  P        R
Sbjct: 1   MTNYGAIPTSSHASPLVDVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTR 60

Query: 61  IKNNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVD 120
           IK N  +F  NY +++L ++F SL+W P S +VF + ++ W++LYFL DEP  +    +D
Sbjct: 61  IKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQID 120

Query: 121 DRLVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECA 180
           DR V++VLS++TV LL  T+AT NI+ ++  G V+V +H  ++ +ED+F  +E   +E +
Sbjct: 121 DRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEAATTETS 180

[Close]

BLAST of Carg21966 vs. Swiss-Prot
Match: sp|Q9FZ63|PR1F1_ARATH (PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-28
Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNL--HSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINR 60
           M TYGT       L+    + T    +   S L T+RPW +M+ L    FP     +I R
Sbjct: 1   MTTYGTNQKSSNDLAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITR 60

Query: 61  IKNNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVD 120
           I+ N  +F TNY +++LF +FLSL+W P S +V +  L AWL+LYFL DEP  +  R +D
Sbjct: 61  IRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREID 120

Query: 121 DRLVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEE 173
            R+V++++S++T+++LF T A  NI +++  G + V  H A++ +ED+F  DEE
Sbjct: 121 HRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEE 174

[Close]

BLAST of Carg21966 vs. Swiss-Prot
Match: sp|Q9LIC7|PR1F4_ARATH (PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25
Identity = 63/174 (36.21%), Postives = 101/174 (58.05%), Query Frame = 0


Query: 6   TIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIKNNAEF 65
           T  +   P  N  S SRA++RI   L T+R W  M  L     P     + +RIK N  +
Sbjct: 8   TTSSHASPAVNHESISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAY 67

Query: 66  FWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDRLVMVV 125
           F +NY ++IL ++F SL+W P S +VF   +  W++LYFL D P  +    +DDR V++ 
Sbjct: 68  FRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIG 127

Query: 126 LSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAG 180
           LS++T+ LL  T+AT NI+ ++  G V+V +H  ++ ++D+F  +E   +E +G
Sbjct: 128 LSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEEAATTETSG 181

[Close]

BLAST of Carg21966 vs. Swiss-Prot
Match: sp|Q9FRR1|PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.9e-24
Identity = 61/155 (39.35%), Postives = 102/155 (65.81%), Query Frame = 0


Query: 20  TSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIKNNAEFFWTNYILIILFILF 79
           ++RA++   S + T RPW E++ L  L+ P    + +  +K+N  +F  NY L +L I+F
Sbjct: 33  SARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVF 92

Query: 80  LSLLWQPISFMVFIISLLAWLYLYFLHD--EPFVIRGRAVDDRLVMVVLSLVTVALLFFT 139
           L L++ P+S + FI+  + W+ LYF  D  +  VI G+ VDD++V+V+LSLVTV  L +T
Sbjct: 93  LGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYT 152

Query: 140 HATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEE 173
              +N+++S+ IG+++V  HGA + ++D+F LDEE
Sbjct: 153 DVGENVLVSLIIGLLIVGAHGAFRNTDDLF-LDEE 186

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BLAST of Carg21966 vs. TrEMBL
Match: tr|A0A1S3BR77|A0A1S3BR77_CUCME (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103492315 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.3e-78
Identity = 158/199 (79.40%), Postives = 172/199 (86.43%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60
           M TYGTIPTEP+P SNLH TSRARERIAS LG +RPWMEMIQ QDL+FP+S  QLINRI+
Sbjct: 1   MGTYGTIPTEPLPSSNLHYTSRARERIASALGKRRPWMEMIQPQDLSFPSSFLQLINRIE 60

Query: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120
           NNAE+FWTNYI IILFILFLSLLWQPIS +VFIIS LAWLYLYFLHDEP+V+RG  VDD+
Sbjct: 61  NNAEYFWTNYIFIILFILFLSLLWQPISLVVFIISFLAWLYLYFLHDEPWVVRGSIVDDQ 120

Query: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180
           LVMVVL L+       T ATKNIIISM +GV+VVFVHGALKGSED  SLDEEGLSEC GG
Sbjct: 121 LVMVVLMLIXXXXXXITDATKNIIISMFVGVLVVFVHGALKGSEDALSLDEEGLSECGGG 180

Query: 181 RGVIKMPLKHAASASFSLS 200
           RGVIKMPLKHAAS+SFS S
Sbjct: 181 RGVIKMPLKHAASSSFSRS 199

[Close]

BLAST of Carg21966 vs. TrEMBL
Match: tr|A0A0A0LWF7|A0A0A0LWF7_CUCSA (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_1G587410 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 3.2e-77
Identity = 157/199 (78.89%), Postives = 169/199 (84.92%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60
           M TYGTIPTEPVPLSNLH TSRARERIAS LG +RPWMEMIQ QDL+FP S  QLINRIK
Sbjct: 1   MGTYGTIPTEPVPLSNLHYTSRARERIASALGKRRPWMEMIQPQDLSFPTSFLQLINRIK 60

Query: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120
           NNAE+FWTNYILI+LFILFLSLLWQPIS +VFIIS LAWLYLYFLHDEP+V+RG  VDD+
Sbjct: 61  NNAEYFWTNYILIVLFILFLSLLWQPISLVVFIISFLAWLYLYFLHDEPWVVRGSIVDDQ 120

Query: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180
           LVMVVL             T NIIISM +GV+VVFVHGALKGSED FSLDEEGLSE  GG
Sbjct: 121 LVMVVLMXXXXXXXXXXXXTMNIIISMFVGVLVVFVHGALKGSEDAFSLDEEGLSEYGGG 180

Query: 181 RGVIKMPLKHAASASFSLS 200
           RGV+KMPLKHAAS+SFSLS
Sbjct: 181 RGVVKMPLKHAASSSFSLS 199

[Close]

BLAST of Carg21966 vs. TrEMBL
Match: tr|M5WCQ3|M5WCQ3_PRUPE (PRA1 family protein OS=Prunus persica OX=3760 GN=PRUPE_7G211500 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.9e-53
Identity = 116/199 (58.29%), Postives = 149/199 (74.87%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60
           M TYGTIPTEP P SNLH  +RA+E+I S LG +RPW+EMI+LQDLT P +  Q I RIK
Sbjct: 1   MTTYGTIPTEPPPSSNLHFVARAKEQIESGLGKRRPWLEMIELQDLTLPTTFNQSIQRIK 60

Query: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120
           +N  FF  NY +IILFILFLSLLW PIS +VFII+++AWL+LYFLHD+P ++ G  +D+R
Sbjct: 61  SNVVFFRMNYAIIILFILFLSLLWHPISLIVFIITMVAWLFLYFLHDQPLMVLGYRIDER 120

Query: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLD-EEGLSECAG 180
           LV + L LVT+  LF T A  +II+ +SIG+ VV VHGAL+  ED+F +D EEG      
Sbjct: 121 LVTISLLLVTIVALFLTSAKYHIIVGLSIGLGVVLVHGALREPEDVFIVDEEEGXXXXXX 180

Query: 181 GRGVIKMPLKHAASASFSL 199
           G   +K+PLK+AAS+S+SL
Sbjct: 181 GAHALKVPLKNAASSSYSL 199

[Close]

BLAST of Carg21966 vs. TrEMBL
Match: tr|A0A2P6RKA2|A0A2P6RKA2_ROSCH (PRA1 family protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0093141 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.8e-49
Identity = 109/199 (54.77%), Postives = 144/199 (72.36%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60
           M TYGTIPTE +P SNL   S+A+ +I  CLG QRPW+EMIQLQDL  P+S  Q I RI+
Sbjct: 1   MTTYGTIPTERLPSSNLDIVSQAKGQIELCLGIQRPWLEMIQLQDLKPPSSFNQSIQRIR 60

Query: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120
            N  FF  NY +IIL ILF+SLLW PIS M+FI+++ AWL+LY+LHD+P V+ G  +D R
Sbjct: 61  TNVAFFRMNYAIIILTILFISLLWHPISLMIFIVTMAAWLFLYYLHDKPLVVVGYEIDQR 120

Query: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSLDEEGLSECAGG 180
            +M  L LVT  +LF T+   NII+++SIG+  V VHGAL+  ED+ ++D+E     +GG
Sbjct: 121 FLMAALFLVTALILFLTNVKYNIIMALSIGLAFVLVHGALREPEDVMTVDDEE-RLASGG 180

Query: 181 RGVIKMPLKHAASASFSLS 200
             V+K+PLK AAS+S+SLS
Sbjct: 181 GPVLKVPLKIAASSSYSLS 198

[Close]

BLAST of Carg21966 vs. TrEMBL
Match: tr|A0A1Q3BK69|A0A1Q3BK69_CEPFO (Thioredoxin domain-containing protein/PRA1 domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_11821 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.8e-43
Identity = 99/175 (56.57%), Postives = 128/175 (73.14%), Query Frame = 0


Query: 1   MATYGTIPTEPVPLSNLHSTSRARERIASCLGTQRPWMEMIQLQDLTFPASSKQLINRIK 60
           M TYGTIPTE  P SNLH    A+E+I S +GTQRPW EMI L  +  P +    I RI+
Sbjct: 247 MTTYGTIPTES-PSSNLHFLWHAQEQIQSSIGTQRPWKEMIPLHAINPPKTFNNTIQRIR 306

Query: 61  NNAEFFWTNYILIILFILFLSLLWQPISFMVFIISLLAWLYLYFLHDEPFVIRGRAVDDR 120
            N EFF  NY +I+LFILF +LLW PIS +VFII ++AWL+LYFL DEP  IRGR +DDR
Sbjct: 307 TNTEFFRMNYAVIMLFILFCTLLWHPISLIVFIIMMVAWLFLYFLRDEPLFIRGRVIDDR 366

Query: 121 LVMVVLSLVTVALLFFTHATKNIIISMSIGVVVVFVHGALKGSEDIFSL-DEEGL 175
           +VMV L +VT+  LFFT+ T+N++I +SIGVVVV VHG ++ ++D+F + D EG+
Sbjct: 367 IVMVFLLMVTIVGLFFTNVTENVVIGLSIGVVVVLVHGLIRNTDDLFFVNDVEGV 420

The following BLAST results are available for this feature:

BLAST of Carg21966 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925984.1	3.7e-101	99.50	PRA1 family protein F2-like isoform X1 [Cucurbita moschata]	[more]
XP_023530325.1	4.8e-101	98.99	PRA1 family protein F2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022973348.1	1.4e-100	98.49	PRA1 family protein F2-like isoform X1 [Cucurbita maxima] >XP_022973351.1 PRA1 f...	[more]
XP_008450846.1	2.0e-78	79.40	PREDICTED: PRA1 family protein C [Cucumis melo]	[more]
XP_004135817.1	4.9e-77	78.89	PREDICTED: PRA1 family protein F2 [Cucumis sativus] >KGN66230.1 hypothetical pro...	[more]

BLAST of Carg21966 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55190.1	4.7e-34	44.81	PRA1 (Prenylated rab acceptor) family protein	[more]
AT3G13720.1	3.8e-31	38.67	PRA1 (Prenylated rab acceptor) family protein	[more]
AT1G17700.1	7.1e-30	39.08	prenylated RAB acceptor 1.F1	[more]
AT3G13710.1	5.6e-27	36.21	prenylated RAB acceptor 1.F4	[more]
AT1G08770.1	1.1e-25	39.35	prenylated RAB acceptor 1.E	[more]

BLAST of Carg21966 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C889\|PR1F2_ARATH	8.6e-33	44.81	PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1	[more]
sp\|Q9LIC6\|PR1F3_ARATH	6.8e-30	38.67	PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1	[more]
sp\|Q9FZ63\|PR1F1_ARATH	1.3e-28	39.08	PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1	[more]
sp\|Q9LIC7\|PR1F4_ARATH	1.0e-25	36.21	PRA1 family protein F4 OS=Arabidopsis thaliana OX=3702 GN=PRA1F4 PE=2 SV=1	[more]
sp\|Q9FRR1\|PRA1E_ARATH	1.9e-24	39.35	PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1	[more]

BLAST of Carg21966 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BR77\|A0A1S3BR77_CUCME	1.3e-78	79.40	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103492315 PE=3 SV=1	[more]
tr\|A0A0A0LWF7\|A0A0A0LWF7_CUCSA	3.2e-77	78.89	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_1G587410 PE=3 SV=1	[more]
tr\|M5WCQ3\|M5WCQ3_PRUPE	1.9e-53	58.29	PRA1 family protein OS=Prunus persica OX=3760 GN=PRUPE_7G211500 PE=3 SV=1	[more]
tr\|A0A2P6RKA2\|A0A2P6RKA2_ROSCH	4.8e-49	54.77	PRA1 family protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0093141 PE=3 SV=...	[more]
tr\|A0A1Q3BK69\|A0A1Q3BK69_CEPFO	1.8e-43	56.57	Thioredoxin domain-containing protein/PRA1 domain-containing protein (Fragment) ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004895	Prenylated_rab_accept_PRA1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21966-RA	Carg21966-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 32..169 e-value: 7.0E-39 score: 132.6
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 1..173
None	No IPR available	PANTHER	PTHR19317:SF2	PRA1 FAMILY PROTEIN C-RELATED	coord: 1..173

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21966	Cla011216	Watermelon (97103) v1	carwmB0889
Carg21966	Csa1G587410	Cucumber (Chinese Long) v2	carcuB0901
Carg21966	MELO3C015460	Melon (DHL92) v3.5.1	carmeB0874
Carg21966	ClCG03G015680	Watermelon (Charleston Gray)	carwcgB0863
Carg21966	CSPI01G28040	Wild cucumber (PI 183967)	carcpiB0921
Carg21966	Cucsa.397310	Cucumber (Gy14) v1	carcgyB1009
Carg21966	CmoCh11G006980	Cucurbita moschata (Rifu)	carcmoB1198
Carg21966	Lsi06G002710	Bottle gourd (USVL1VR-Ls)	carlsiB806
Carg21966	MELO3C015460.2	Melon (DHL92) v3.6.1	carmedB0882
Carg21966	CsaV3_1G040330	Cucumber (Chinese Long) v3	carcucB0925
Carg21966	Bhi09G000313	Wax gourd	carwgoB1032
Carg21966	Bhi02G001573	Wax gourd	carwgoB1034

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg21966	Carg09469	Silver-seed gourd	carcarB639

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21966	Silver-seed gourd	carcarB107
Carg21966	Silver-seed gourd	carcarB525
Carg21966	Cucumber (Gy14) v2	carcgybB0874
Carg21966	Cucumber (Gy14) v2	carcgybB0875
Carg21966	Cucumber (Gy14) v1	carcgyB1005
Carg21966	Cucurbita maxima (Rimu)	carcmaB1226
Carg21966	Cucurbita maxima (Rimu)	carcmaB1227
Carg21966	Cucurbita maxima (Rimu)	carcmaB1229
Carg21966	Cucurbita moschata (Rifu)	carcmoB1197
Carg21966	Cucurbita pepo (Zucchini)	carcpeB1236
Carg21966	Cucurbita pepo (Zucchini)	carcpeB1238
Carg21966	Wild cucumber (PI 183967)	carcpiB0922
Carg21966	Cucumber (Chinese Long) v2	carcuB0902
Carg21966	Cucumber (Chinese Long) v3	carcucB0926
Carg21966	Bottle gourd (USVL1VR-Ls)	carlsiB803
Carg21966	Melon (DHL92) v3.6.1	carmedB0883
Carg21966	Watermelon (Charleston Gray)	carwcgB0862
Carg21966	Watermelon (97103) v1	carwmB0891
Carg21966	Watermelon (97103) v2	carwmbB0924
Carg21966	Watermelon (97103) v2	carwmbB0925
Carg21966	Wax gourd	carwgoB1031