Carg21889 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21889
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
Location	Cucurbita_argyrosperma_scaffold_111 : 225815 .. 227543 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGAGTTGAATGTAACGGTTGAATTAAAGGTTACTCACATCTGAATTATTAAGTTTTCTGACTCTTTCTTACATGATTTGCAGGTCTACTACAAGTTCAACAGCATTTCAATGCTTAGGGAGCCTATAATGTTGATTTTTGGATTCTTTGTCCTTTTTGTCTCATGCATCATTTATATGCATTCGGACATGTCAATTTCAAAGTCTTCGCCTTCTTATTTAGCTAAACTACAGTGGGATGAGGTAAAGTAGATGGTATTCTATCGTATTATTCCGAGTATGTAGATGGTTTAGGCAGGGCCATAGTAGAAGATGCCTTACATTTCTGACACTGGTGGATTCTCACTGCCTTATTGCTTTGTCCATCTCATTTCAGGTGCAAACTGTGATTCAGCAAGTTCAGAATATTATCAATAGATGCTTAACCATACACGATAAATTGGATGCGTCACTGCGTGATCTTTCTCGAACTGGTGATGTCCAAGCTTGTAAAGCAGCTCGGAAAGCAGCCGATGCTTCATTGAAAGAGCTTTCAAAAGAGTTGAAGTCTTTGCTTTCATTCTTGCAGTCGGCCCAGCAGGCCACCCAGATATTGCCTAAGGTTCAATTGCTTCTAGTTTGTTCGTATAGATTTAACTGTGAATATCATCATGCATTGACAAACAAAATATAGTGAACTCAAAAAACAAAACAAAAAAAGGACAGAAAAAGTCAAACAAAATATAGTGTGATATGTAAAAGGAGATGTCCTGTCCCATGTTGGCTCAAACACAAACTGATTAGAGAAGTGGGGATGCTGGTTGTCATGAACAAACTATGTTAAGTATCAAGTGGTGCTGCCTGTGCAGGTGGAAGAGCTGGTGGCCAAGGAGAGAGATCTGCAGGAGAGGTTGGTTGTGAAACACATGACGGTGGTGGACTGCTACGAGAAGAAGTTCGGTGGACGTGAAATCGAAAACAGGGTTGCTTCACAGCAGCAAAGAATTACAACTTTGAGGCAGGAAGTAGATGATCTTCTCGAGTTCATTGATGAAATATAATGAAATATGCTGACAGCGTTGGCATATTTATCTTCATGACCACATAACGCTCTAAGATTAGCCAATGTCTGCTTGGGGTTCAGAATTTTGTCGTGCTTTATTTAGAGATTTTGGTTACCTTCACCTTTAATCTGATGACCTGCAAGGTTTTGAATTATGATCCAATTAGAAAGTATAAGCCTGGAATAGAGCGGATACACATAATGGCATATATTATAATCCTTCCTCTTTATCTACATCATGCTTGACTTGTTGTCAAGATAATTTATCCTTGCTTTTAGGGTTTTGGTAAGGGTGTCTCTCAATGGTTCTTGGATCTTCAATGTATTTTCTCACGAGTGAGATGATAATTCCTTCAATATGTTTAGTTTGGCCGTATAACACTAAAGTAGATGCAATGTGAAATGCAGTTTCATTGTCAGTTTAGTTTGGCATTTTAACATTAAAATTTACATTCATGACGAATCCTATCGTAGTTAAAGGTTGATTATATCCTATCGTAGTTAAAGGTTGATTATATGCATAGTTCTATATTCTAACTTCATACTTCAGGACAGACTCTTGCGGCTCTTGGAGTCGGCATAACTCTATATTCTAACTTCATACTTCAGGACAGACTCTTGAGGCTCATAGAGTCGGCCTCGTACCACAAGACCACATGGAGTTGCTCTAGATGAGATTTCGG

mRNA sequence

ATGGTCTACTACAAGTTCAACAGCATTTCAATGCTTAGGGAGCCTATAATGTTGATTTTTGGATTCTTTGTCCTTTTTGTCTCATGCATCATTTATATGCATTCGGACATGTCAATTTCAAAGTCTTCGCCTTCTTATTTAGCTAAACTACAGTGGGATGAGGTGCAAACTGTGATTCAGCAAGTTCAGAATATTATCAATAGATGCTTAACCATACACGATAAATTGGATGCGTCACTGCGTGATCTTTCTCGAACTGGTGATGTCCAAGCTTGTAAAGCAGCTCGGAAAGCAGCCGATGCTTCATTGAAAGAGCTTTCAAAAGAGTTGAAGTCTTTGCTTTCATTCTTGCAGTCGGCCCAGCAGGCCACCCAGATATTGCCTAAGGTGGAAGAGCTGGTGGCCAAGGAGAGAGATCTGCAGGAGAGGTTGGTTGTGAAACACATGACGGTGGTGGACTGCTACGAGAAGAAGTTCGGTGGACGTGAAATCGAAAACAGGGTTGCTTCACAGCAGCAAAGAATTACAACTTTGAGGCAGGAAGTAGATGATCTTCTCGAGTTCATTGATGAAATATAATGAAATATGCTGACAGCGTTGGCATATTTATCTTCATGACCACATAACGCTCTAAGATTAGCCAATGTCTGCTTGGGGTTCAGAATTTTGTCGTGCTTTATTTAGAGATTTTGGTTACCTTCACCTTTAATCTGATGACCTGCAAGGTTTTGAATTATGATCCAATTAGAAAGTATAAGCCTGGAATAGAGCGGATACACATAATGGCATATATTATAATCCTTCCTCTTTATCTACATCATGCTTGACTTGTTGTCAAGATAATTTATCCTTGCTTTTAGGGTTTTGGTAAGGGTGTCTCTCAATGGTTCTTGGATCTTCAATGTATTTTCTCACGAGTGAGATGATAATTCCTTCAATATGTTTAGTTTGGCCGTATAACACTAAAGTAGATGCAATGTGAAATGCAGTTTCATTGTCAGTTTAGTTTGGCATTTTAACATTAAAATTTACATTCATGACGAATCCTATCGTAGTTAAAGGTTGATTATATGCATAGTTCTATATTCTAACTTCATACTTCAGGACAGACTCTTGCGGCTCTTGGAGTCGGCATAACTCTATATTCTAACTTCATACTTCAGGACAGACTCTTGAGGCTCATAGAGTCGGCCTCGTACCACAAGACCACATGGAGTTGCTCTAGATGAGATTTCGG

Coding sequence (CDS)

ATGGTCTACTACAAGTTCAACAGCATTTCAATGCTTAGGGAGCCTATAATGTTGATTTTTGGATTCTTTGTCCTTTTTGTCTCATGCATCATTTATATGCATTCGGACATGTCAATTTCAAAGTCTTCGCCTTCTTATTTAGCTAAACTACAGTGGGATGAGGTGCAAACTGTGATTCAGCAAGTTCAGAATATTATCAATAGATGCTTAACCATACACGATAAATTGGATGCGTCACTGCGTGATCTTTCTCGAACTGGTGATGTCCAAGCTTGTAAAGCAGCTCGGAAAGCAGCCGATGCTTCATTGAAAGAGCTTTCAAAAGAGTTGAAGTCTTTGCTTTCATTCTTGCAGTCGGCCCAGCAGGCCACCCAGATATTGCCTAAGGTGGAAGAGCTGGTGGCCAAGGAGAGAGATCTGCAGGAGAGGTTGGTTGTGAAACACATGACGGTGGTGGACTGCTACGAGAAGAAGTTCGGTGGACGTGAAATCGAAAACAGGGTTGCTTCACAGCAGCAAAGAATTACAACTTTGAGGCAGGAAGTAGATGATCTTCTCGAGTTCATTGATGAAATATAA

Protein sequence

MVYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQVQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKAADASLKELSKELKSLLSFLQSAQQATQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQEVDDLLEFIDEI

Homology

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BLAST of Carg21889 vs. NCBI nr
Match: XP_023522430.1 (dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.8 bits (782), Expect = 1.0e-79
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ
Sbjct: 31  VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 90

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 91  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 150

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
           XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE
Sbjct: 151 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 210

Query: 182 VDDLLEFIDEI 193
           VDDLLEFIDEI
Sbjct: 211 VDDLLEFIDEI 221

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BLAST of Carg21889 vs. NCBI nr
Match: XP_023546058.1 (dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.8 bits (782), Expect = 1.0e-79
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ
Sbjct: 420 VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 479

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 480 VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 539

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
           XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE
Sbjct: 540 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 599

Query: 182 VDDLLEFIDEI 193
           VDDLLEFIDEI
Sbjct: 600 VDDLLEFIDEI 610

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BLAST of Carg21889 vs. NCBI nr
Match: XP_022999654.1 (dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like [Cucurbita maxima])

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 189/191 (98.95%), Postives = 189/191 (98.95%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ
Sbjct: 420 VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 479

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 480 VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 539

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
           XXXQILPKVEELVAKERDLQERLVVKH TVVDCYEKKFGGREIENRVA QQQRITTLRQE
Sbjct: 540 XXXQILPKVEELVAKERDLQERLVVKHTTVVDCYEKKFGGREIENRVAPQQQRITTLRQE 599

Query: 182 VDDLLEFIDEI 193
           VDDLLEFIDEI
Sbjct: 600 VDDLLEFIDEI 610

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BLAST of Carg21889 vs. NCBI nr
Match: XP_022946775.1 (dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like [Cucurbita moschata])

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 188/191 (98.43%), Postives = 188/191 (98.43%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ
Sbjct: 420 VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 479

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           VQNIINR LTIHDKLDASLRDLSRTGDVQACKAARK XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 480 VQNIINRRLTIHDKLDASLRDLSRTGDVQACKAARKAXXXXXXXXXXXXXXXXXXXXXXX 539

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
           XXX ILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE
Sbjct: 540 XXXXILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 599

Query: 182 VDDLLEFIDEI 193
           VDDLLEFIDEI
Sbjct: 600 VDDLLEFIDEI 610

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BLAST of Carg21889 vs. NCBI nr
Match: XP_008464825.1 (PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Cucumis melo])

HSP 1 Score: 288.5 bits (737), Expect = 1.7e-74
Identity = 152/191 (79.58%), Postives = 159/191 (83.25%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKFNSISMLREP+MLIFGFF+LFVSCIIYMHSDMSISKSS SYLAKLQWDEVQTVIQQ
Sbjct: 420 VYYKFNSISMLREPLMLIFGFFILFVSCIIYMHSDMSISKSSASYLAKLQWDEVQTVIQQ 479

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           VQN+INRCLT HDKL+ASLRDLSRTGD+QACKAARK                        
Sbjct: 480 VQNVINRCLTTHDKLEASLRDLSRTGDIQACKAARKTVEASLKELSKELKPLISFLQSSQ 539

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
              Q+LPKVEELVAKER+LQERLV KH TVVDCYEKK GGREIENRVASQQQRITTLRQE
Sbjct: 540 QTNQMLPKVEELVAKERELQERLVAKHTTVVDCYEKKLGGREIENRVASQQQRITTLRQE 599

Query: 182 VDDLLEFIDEI 193
           VDDLLEFIDEI
Sbjct: 600 VDDLLEFIDEI 610

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BLAST of Carg21889 vs. TAIR10
Match: AT1G76400.1 (Ribophorin I)

HSP 1 Score: 228.0 bits (580), Expect = 4.9e-60
Identity = 116/191 (60.73%), Postives = 143/191 (74.87%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKF++I++L EP+MLI GFF+LF++CIIY  +D+SISKSSPSYLAKLQWDEV   +Q+
Sbjct: 424 VYYKFSNINLLSEPLMLISGFFILFITCIIYTRADISISKSSPSYLAKLQWDEVLATLQE 483

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           VQ+I+ +CL  HDKL+ASLRDLSRTGD+Q CKAARK                        
Sbjct: 484 VQSIVQKCLATHDKLEASLRDLSRTGDIQTCKAARKSTDSLLKDLSKELKPLLGFLQSFP 543

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
               I PKVEELV KE++LQE+L+ KH TVV+ YEKK  GR+IENR+ASQQQ+I  LRQE
Sbjct: 544 SASHISPKVEELVVKEKELQEKLMAKHTTVVEGYEKKSSGRDIENRIASQQQKIIALRQE 603

Query: 182 VDDLLEFIDEI 193
           ++DLLEFIDEI
Sbjct: 604 IEDLLEFIDEI 614

[Close]

BLAST of Carg21889 vs. Swiss-Prot
Match: sp|Q9SFX3|OST1A_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Arabidopsis thaliana OX=3702 GN=OST1A PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.8e-59
Identity = 116/191 (60.73%), Postives = 143/191 (74.87%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKF++I++L EP+MLI GFF+LF++CIIY  +D+SISKSSPSYLAKLQWDEV   +Q+
Sbjct: 424 VYYKFSNINLLSEPLMLISGFFILFITCIIYTRADISISKSSPSYLAKLQWDEVLATLQE 483

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           VQ+I+ +CL  HDKL+ASLRDLSRTGD+Q CKAARK                        
Sbjct: 484 VQSIVQKCLATHDKLEASLRDLSRTGDIQTCKAARKSTDSLLKDLSKELKPLLGFLQSFP 543

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
               I PKVEELV KE++LQE+L+ KH TVV+ YEKK  GR+IENR+ASQQQ+I  LRQE
Sbjct: 544 SASHISPKVEELVVKEKELQEKLMAKHTTVVEGYEKKSSGRDIENRIASQQQKIIALRQE 603

Query: 182 VDDLLEFIDEI 193
           ++DLLEFIDEI
Sbjct: 604 IEDLLEFIDEI 614

[Close]

BLAST of Carg21889 vs. Swiss-Prot
Match: sp|Q0DJC5|OST1A_ORYSJ (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Oryza sativa subsp. japonica OX=39947 GN=OST1A PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-57
Identity = 110/191 (57.59%), Postives = 145/191 (75.92%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYY+FN+IS+LREP+MLI GFF+LF++CI+YM +DMSISK+SPSYLAK+QWDEVQ++IQQ
Sbjct: 425 VYYRFNNISLLREPMMLITGFFLLFMACIVYMRTDMSISKNSPSYLAKVQWDEVQSIIQQ 484

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           +Q I N+CL  HDKL+ SL +LSR+GDV++CK ARK                        
Sbjct: 485 IQAIFNQCLAAHDKLETSLHELSRSGDVKSCKVARKTADAQFKELAKELKPLLTSLQSSS 544

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
              QI PKVEELVAKER+LQ++L+ +H TVVD +EKK  G+++ENR+A+QQQ++  LRQE
Sbjct: 545 QSYQIWPKVEELVAKERELQDKLMTRHSTVVDSFEKKLRGQDVENRIAAQQQKVAALRQE 604

Query: 182 VDDLLEFIDEI 193
           V+ LLE+I EI
Sbjct: 605 VESLLEYISEI 615

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BLAST of Carg21889 vs. Swiss-Prot
Match: sp|E2RQ08|RPN1_CANLF (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Canis lupus familiaris OX=9615 GN=RPN1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 28/97 (28.87%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1   MVYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQ 60
           +V+Y FN + ML+EP++++  F++LF + IIY+  D SI+K  P+  A++   +V  + +
Sbjct: 425 VVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITK-DPAAEARM---KVACITE 484

Query: 61  QVQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARK 98
           QV  ++N+ + ++   D ++    ++ DV    + +K
Sbjct: 485 QVLTLVNKRIGLYRHFDETINRYKQSRDVSTLNSGKK 517

[Close]

BLAST of Carg21889 vs. Swiss-Prot
Match: sp|Q91YQ5|RPN1_MOUSE (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus OX=10090 GN=Rpn1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 28/97 (28.87%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1   MVYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQ 60
           +V+Y FN + ML+EP++++  F++LF + IIY+  D SI+K  P+  A++   +V  + +
Sbjct: 426 VVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITK-DPAAEARM---KVACITE 485

Query: 61  QVQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARK 98
           QV  ++N+ L ++   D ++    ++ D+    + +K
Sbjct: 486 QVLTLVNKRLGLYRHFDETVNRYKQSRDISTLNSGKK 518

[Close]

BLAST of Carg21889 vs. Swiss-Prot
Match: sp|P07153|RPN1_RAT (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Rattus norvegicus OX=10116 GN=Rpn1 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 28/97 (28.87%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1   MVYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQ 60
           +V+Y FN + ML+EP++++  F++LF + IIY+  D SI+K  P+  A++   +V  + +
Sbjct: 423 VVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITK-DPAAEARM---KVACITE 482

Query: 61  QVQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARK 98
           QV  ++N+ L ++   D ++    ++ D+    + +K
Sbjct: 483 QVLTLVNKRLGLYRHFDETVNRYKQSRDISTLNSGKK 515

[Close]

BLAST of Carg21889 vs. TrEMBL
Match: tr|A0A1S3CNZ5|A0A1S3CNZ5_CUCME (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Cucumis melo OX=3656 GN=LOC103502612 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-74
Identity = 152/191 (79.58%), Postives = 159/191 (83.25%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKFNSISMLREP+MLIFGFF+LFVSCIIYMHSDMSISKSS SYLAKLQWDEVQTVIQQ
Sbjct: 420 VYYKFNSISMLREPLMLIFGFFILFVSCIIYMHSDMSISKSSASYLAKLQWDEVQTVIQQ 479

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           VQN+INRCLT HDKL+ASLRDLSRTGD+QACKAARK                        
Sbjct: 480 VQNVINRCLTTHDKLEASLRDLSRTGDIQACKAARKTVEASLKELSKELKPLISFLQSSQ 539

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
              Q+LPKVEELVAKER+LQERLV KH TVVDCYEKK GGREIENRVASQQQRITTLRQE
Sbjct: 540 QTNQMLPKVEELVAKERELQERLVAKHTTVVDCYEKKLGGREIENRVASQQQRITTLRQE 599

Query: 182 VDDLLEFIDEI 193
           VDDLLEFIDEI
Sbjct: 600 VDDLLEFIDEI 610

[Close]

BLAST of Carg21889 vs. TrEMBL
Match: tr|A0A0A0KDF6|A0A0A0KDF6_CUCSA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Cucumis sativus OX=3659 GN=Csa_6G355420 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.9e-74
Identity = 152/191 (79.58%), Postives = 158/191 (82.72%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKFNSISMLREP+MLIFGFF+LFVSCIIYMHSDMSISKSS SYLAKLQWDEVQTVIQQ
Sbjct: 420 VYYKFNSISMLREPVMLIFGFFILFVSCIIYMHSDMSISKSSASYLAKLQWDEVQTVIQQ 479

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           VQN+INRCLT HDKL+ASLRDLSRTGDVQACKAARK                        
Sbjct: 480 VQNVINRCLTTHDKLEASLRDLSRTGDVQACKAARKTVEASLKELSKELKPLISFLQSSQ 539

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
              QILPKVEELVAKER+LQERLV KH TVVDCYEKK GGREIEN+V SQQQRITTLRQE
Sbjct: 540 QATQILPKVEELVAKERELQERLVAKHTTVVDCYEKKLGGREIENKVTSQQQRITTLRQE 599

Query: 182 VDDLLEFIDEI 193
           VDDLLEFIDEI
Sbjct: 600 VDDLLEFIDEI 610

[Close]

BLAST of Carg21889 vs. TrEMBL
Match: tr|A0A059BQX1|A0A059BQX1_EUCGR (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F01802 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 5.5e-66
Identity = 133/191 (69.63%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKFNSISMLREPIMLI GFF LFV+CI+Y+H+D+SISKSS SYLAK+QW+EVQ+VIQQ
Sbjct: 429 VYYKFNSISMLREPIMLISGFFFLFVACIVYVHADLSISKSSASYLAKVQWEEVQSVIQQ 488

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           V N+INRCLT+HDKLDASLRDLSRTGDVQACK ARK                        
Sbjct: 489 VNNLINRCLTVHDKLDASLRDLSRTGDVQACKTARKQADGLLKELSKELKPLLSILQTSP 548

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
              QILPKVEELV KE++LQ++L+VKH TVV+CYEKK  GREIENR+ASQQ +IT LRQE
Sbjct: 549 QAVQILPKVEELVVKEKELQDKLMVKHTTVVECYEKKVSGREIENRIASQQNKITALRQE 608

Query: 182 VDDLLEFIDEI 193
           VDDLL+FIDE+
Sbjct: 609 VDDLLDFIDEL 619

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BLAST of Carg21889 vs. TrEMBL
Match: tr|A0A059BQG4|A0A059BQG4_EUCGR (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F01802 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 5.5e-66
Identity = 133/191 (69.63%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKFNSISMLREPIMLI GFF LFV+CI+Y+H+D+SISKSS SYLAK+QW+EVQ+VIQQ
Sbjct: 423 VYYKFNSISMLREPIMLISGFFFLFVACIVYVHADLSISKSSASYLAKVQWEEVQSVIQQ 482

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           V N+INRCLT+HDKLDASLRDLSRTGDVQACK ARK                        
Sbjct: 483 VNNLINRCLTVHDKLDASLRDLSRTGDVQACKTARKQADGLLKELSKELKPLLSILQTSP 542

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
              QILPKVEELV KE++LQ++L+VKH TVV+CYEKK  GREIENR+ASQQ +IT LRQE
Sbjct: 543 QAVQILPKVEELVVKEKELQDKLMVKHTTVVECYEKKVSGREIENRIASQQNKITALRQE 602

Query: 182 VDDLLEFIDEI 193
           VDDLL+FIDE+
Sbjct: 603 VDDLLDFIDEL 613

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BLAST of Carg21889 vs. TrEMBL
Match: tr|A0A2N9FNI2|A0A2N9FNI2_FAGSY (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20178 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 7.2e-66
Identity = 140/191 (73.30%), Postives = 150/191 (78.53%), Query Frame = 0


Query: 2   VYYKFNSISMLREPIMLIFGFFVLFVSCIIYMHSDMSISKSSPSYLAKLQWDEVQTVIQQ 61
           VYYKF S+SML EP+MLI G F+LFVS IIYMH+D+SISKSSPSYLAKLQWDEVQ VIQQ
Sbjct: 438 VYYKFISLSMLTEPLMLISGIFLLFVSGIIYMHADLSISKSSPSYLAKLQWDEVQAVIQQ 497

Query: 62  VQNIINRCLTIHDKLDASLRDLSRTGDVQACKAARKXXXXXXXXXXXXXXXXXXXXXXXX 121
           VQN INRCLTIHDKL+ASLRDLSRTGD QACKAARK                        
Sbjct: 498 VQNNINRCLTIHDKLEASLRDLSRTGDAQACKAARKAFDGLLKDLSKDLKPLLAFLQSSP 557

Query: 122 XXXQILPKVEELVAKERDLQERLVVKHMTVVDCYEKKFGGREIENRVASQQQRITTLRQE 181
              QILPKVEELVAKERDLQERL+ KH TVVD YEKK GGREIENR+A QQQ+IT LRQE
Sbjct: 558 QAAQILPKVEELVAKERDLQERLMAKHSTVVDSYEKKSGGREIENRIALQQQKITVLRQE 617

Query: 182 VDDLLEFIDEI 193
           VDDLLEF+DEI
Sbjct: 618 VDDLLEFVDEI 628

The following BLAST results are available for this feature:

BLAST of Carg21889 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522430.1	1.0e-79	100.00	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like, ...	[more]
XP_023546058.1	1.0e-79	100.00	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like [...	[more]
XP_022999654.1	1.9e-78	98.95	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like [...	[more]
XP_022946775.1	1.2e-77	98.43	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like [...	[more]
XP_008464825.1	1.7e-74	79.58	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subuni...	[more]

BLAST of Carg21889 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76400.1	4.9e-60	60.73	Ribophorin I	[more]

BLAST of Carg21889 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SFX3\|OST1A_ARATH	8.8e-59	60.73	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Ara...	[more]
sp\|Q0DJC5\|OST1A_ORYSJ	3.7e-57	57.59	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Ory...	[more]
sp\|E2RQ08\|RPN1_CANLF	2.3e-06	28.87	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Cani...	[more]
sp\|Q91YQ5\|RPN1_MOUSE	2.3e-06	28.87	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus ...	[more]
sp\|P07153\|RPN1_RAT	2.3e-06	28.87	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Ratt...	[more]

BLAST of Carg21889 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CNZ5\|A0A1S3CNZ5_CUCME	1.1e-74	79.58	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Cucu...	[more]
tr\|A0A0A0KDF6\|A0A0A0KDF6_CUCSA	1.9e-74	79.58	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Cucu...	[more]
tr\|A0A059BQX1\|A0A059BQX1_EUCGR	5.5e-66	69.63	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Euca...	[more]
tr\|A0A059BQG4\|A0A059BQG4_EUCGR	5.5e-66	69.63	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Euca...	[more]
tr\|A0A2N9FNI2\|A0A2N9FNI2_FAGSY	7.2e-66	73.30	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Fagu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005783	endoplasmic reticulum

Vocabulary: **Biological Process**
Term	Definition
GO:0006486	protein glycosylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0004579	dolichyl-diphosphooligosaccharide-protein glycotransferase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR007676	Ribophorin_I

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018279	protein N-linked glycosylation via asparagine
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0008250	oligosaccharyltransferase complex
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0004579	dolichyl-diphosphooligosaccharide-protein glycotransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21889-RA	Carg21889-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 161..181
None	No IPR available	COILS	Coil	Coil	coord: 89..123
None	No IPR available	PANTHER	PTHR21049:SF1	DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 1A	coord: 2..190
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..29 score: 5.0
IPR007676	Ribophorin I	PANTHER	PTHR21049	RIBOPHORIN I	coord: 2..190

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21889	Silver-seed gourd	carcarB159
Carg21889	Silver-seed gourd	carcarB247
Carg21889	Silver-seed gourd	carcarB248
Carg21889	Cucumber (Gy14) v2	carcgybB0225
Carg21889	Cucumber (Gy14) v1	carcgyB0255
Carg21889	Cucurbita maxima (Rimu)	carcmaB0289
Carg21889	Cucurbita maxima (Rimu)	carcmaB0290
Carg21889	Cucurbita moschata (Rifu)	carcmoB0294
Carg21889	Cucurbita moschata (Rifu)	carcmoB0295
Carg21889	Cucurbita moschata (Rifu)	carcmoB0296
Carg21889	Cucurbita pepo (Zucchini)	carcpeB0297
Carg21889	Cucurbita pepo (Zucchini)	carcpeB0298
Carg21889	Cucurbita pepo (Zucchini)	carcpeB0299
Carg21889	Wild cucumber (PI 183967)	carcpiB0242
Carg21889	Cucumber (Chinese Long) v2	carcuB0236
Carg21889	Cucumber (Chinese Long) v3	carcucB0240
Carg21889	Bottle gourd (USVL1VR-Ls)	carlsiB188
Carg21889	Melon (DHL92) v3.5.1	carmeB0216
Carg21889	Melon (DHL92) v3.6.1	carmedB0221
Carg21889	Watermelon (Charleston Gray)	carwcgB0205
Carg21889	Watermelon (97103) v1	carwmB0199
Carg21889	Watermelon (97103) v2	carwmbB0214
Carg21889	Wax gourd	carwgoB0262
Carg21889	Wax gourd	carwgoB0263