Carg21870 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21870
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein TSSC1
Location	Cucurbita_argyrosperma_scaffold_111 : 93039 .. 94162 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACAATGTCGCCGATTGCAGAGTGCCGGTACTGATTCGGCTGTCAACTTATGGTTGGCATCCATGACTGATGGCGAACTAAAATCTGAAAGGTCATCTTTTTGTTTAGGATGTTCCTTTTTTCTGTTTCTCTTTAAAGATTATGCTAATGCTTCATATTAACTTATGAGCAGGACGATTGATTCACCTCGATGTCCAGTTGATCCATTACTGCATTCTTACAGTGACTACGAAGACAGTGTTTATGGTAACAGCTGTAGCCTTATTATTTCAATATATTTATCCAGTGGGTAAAACTGATTGGGTGATTTTAATTTCAAATTAAAAGGCCTTGCTTGGAGCTCTCGTGAGCCTTGGATCTTTGCTTCACTGTCCTATGATGGGAGGGTAAGTAGCATCAACCTTTTCTCGAAGAGTCGCCGAACATGTGCTTTGACATTGCATTTCAGTTTCTTTTTACTGTCAATAGATCATGGCTATATGCTGCATGGATTATCACGTCATCTAATTTCGTTTTACTATTTTTCTGCTTGCTTAAATTGAGGTTTTATATTTTAAATAAGTCTCGATTAAGTTGTTACGCAAAGTCAGTTGATCGTTTATAGAAGCTCATTACTCATTCGATCTTCCCGCAACATTTATGGTCGATATCCGTGTCTGTAAACCAAACCATTTTACAATCCTACCGAATGACAGTTCAGTTATTTCTTTTTCTTGTGAAACAGGTCGTTGTAGAATCAGTGAAGCCTTTTCTCTCGAGATAATGAAGTTGATCATTTTAGTTTTTGTTTCTCAATATTCATTGCTTCCTCAGTTTGTCTCTGTTTCATCAGCAAGAGTAGTTGTTCCTGAATTTAGTTCAAACAAAACCCCACTCGTCTTTACAACGGTATCGATGAGATTGAGATTGCTCGATGCTCGAGGACTTGTCCAGTAACAGAGAAAACATACACACTACTCAGGGAGTAATTTTATTGTACTGAAGATGAGCATAGCTGTTATGAACAATATGATTCGTTGTTTTGTTGTGTTGAACTTGCTCTACAACTAGTTCATATAGCTTAAACTTTCAACCAGAAAAGAAAAATAATGTTATATATACTTTGATTTCCTCTTGCTTC

mRNA sequence

ATGACACAATGTCGCCGATTGCAGAGTGCCGGTACTGATTCGGCTGTCAACTTATGGTTGGCATCCATGACTGATGGCGAACTAAAATCTGAAAGGACGATTGATTCACCTCGATGTCCAGTTGATCCATTACTGCATTCTTACAGTGACTACGAAGACAGTGTTTATGGCCTTGCTTGGAGCTCTCGTGAGCCTTGGATCTTTGCTTCACTGTCCTATGATGGGAGGGTCGTTGTAGAATCAGTGAAGCCTTTTCTCTCGAGATAATGAAGTTGATCATTTTAGTTTTTGTTTCTCAATATTCATTGCTTCCTCAGTTTGTCTCTGTTTCATCAGCAAGAGTAGTTGTTCCTGAATTTAGTTCAAACAAAACCCCACTCGTCTTTACAACGGTATCGATGAGATTGAGATTGCTCGATGCTCGAGGACTTGTCCAGTAACAGAGAAAACATACACACTACTCAGGGAGTAATTTTATTGTACTGAAGATGAGCATAGCTGTTATGAACAATATGATTCGTTGTTTTGTTGTGTTGAACTTGCTCTACAACTAGTTCATATAGCTTAAACTTTCAACCAGAAAAGAAAAATAATGTTATATATACTTTGATTTCCTCTTGCTTC

Coding sequence (CDS)

ATGACACAATGTCGCCGATTGCAGAGTGCCGGTACTGATTCGGCTGTCAACTTATGGTTGGCATCCATGACTGATGGCGAACTAAAATCTGAAAGGACGATTGATTCACCTCGATGTCCAGTTGATCCATTACTGCATTCTTACAGTGACTACGAAGACAGTGTTTATGGCCTTGCTTGGAGCTCTCGTGAGCCTTGGATCTTTGCTTCACTGTCCTATGATGGGAGGGTCGTTGTAGAATCAGTGAAGCCTTTTCTCTCGAGATAA

Protein sequence

MTQCRRLQSAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESVKPFLSR

Homology

[Close]

BLAST of Carg21870 vs. NCBI nr
Match: XP_022999730.1 (WD repeat-containing protein DWA2-like [Cucurbita maxima])

HSP 1 Score: 169.5 bits (428), Expect = 5.2e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 68
           SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF
Sbjct: 278 SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 337

Query: 69  ASLSYDGRVVVESVKPFLSR 89
           ASLSYDGRVVVESVKPFLSR
Sbjct: 338 ASLSYDGRVVVESVKPFLSR 357

[Close]

BLAST of Carg21870 vs. NCBI nr
Match: XP_023547262.1 (WD repeat-containing protein DWA2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.5 bits (428), Expect = 5.2e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 68
           SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF
Sbjct: 278 SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 337

Query: 69  ASLSYDGRVVVESVKPFLSR 89
           ASLSYDGRVVVESVKPFLSR
Sbjct: 338 ASLSYDGRVVVESVKPFLSR 357

[Close]

BLAST of Carg21870 vs. NCBI nr
Match: XP_022946164.1 (WD repeat-containing protein DWA2-like [Cucurbita moschata])

HSP 1 Score: 167.9 bits (424), Expect = 1.5e-38
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 68
           SAGTDSAVNLWLASMTDGELKSERTIDSPRCP DPLLHSYSDYEDSVYGLAWSSREPWIF
Sbjct: 278 SAGTDSAVNLWLASMTDGELKSERTIDSPRCPADPLLHSYSDYEDSVYGLAWSSREPWIF 337

Query: 69  ASLSYDGRVVVESVKPFLSR 89
           ASLSYDGRVVVESVKPFLSR
Sbjct: 338 ASLSYDGRVVVESVKPFLSR 357

[Close]

BLAST of Carg21870 vs. NCBI nr
Match: XP_022153181.1 (WD repeat-containing protein DWA2 [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 68
           SAGTDSAVNLWLA ++DGELKSERT+DS     DPLLHSYSDYEDSVYGLAWS REPWIF
Sbjct: 278 SAGTDSAVNLWLAPVSDGELKSERTVDSTPPRGDPLLHSYSDYEDSVYGLAWSFREPWIF 337

Query: 69  ASLSYDGRVVVESVKPFLSR 89
           ASLSYDGRVVVESVKPFLSR
Sbjct: 338 ASLSYDGRVVVESVKPFLSR 357

[Close]

BLAST of Carg21870 vs. NCBI nr
Match: XP_008464867.1 (PREDICTED: WD repeat-containing protein DWA2-like isoform X1 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 2.3e-31
Identity = 70/80 (87.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 68
           SAGTDSAVNLWLASM+D ELKSER +DS     DPLLHSYSDYEDSVYGLAWS REPWIF
Sbjct: 271 SAGTDSAVNLWLASMSDDELKSERKVDSSPRQGDPLLHSYSDYEDSVYGLAWSFREPWIF 330

Query: 69  ASLSYDGRVVVESVKPFLSR 89
           ASLSYDGRVVVESVKPFLSR
Sbjct: 331 ASLSYDGRVVVESVKPFLSR 350

[Close]

BLAST of Carg21870 vs. TAIR10
Match: AT1G76260.1 (DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2)

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-29
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 68
           S GTDSAVNLW AS +     SE  +++ R  V+PLL+SY+DYEDSVYGLAWSSREPWIF
Sbjct: 270 SVGTDSAVNLWFASASSEHKTSESPVEASRQRVNPLLNSYTDYEDSVYGLAWSSREPWIF 329

Query: 69  ASLSYDGRVVVESVKPFLSR 89
           ASLSYDGRVV+ESVKPFL R
Sbjct: 330 ASLSYDGRVVIESVKPFLPR 349

[Close]

BLAST of Carg21870 vs. TAIR10
Match: AT1G20540.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-29
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELK-SERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWI 68
           SAGTDS VNLW AS T  + K SE  ++S R  V+PLL+SY+DYEDSVYGLAWSSREPW+
Sbjct: 270 SAGTDSVVNLWYASATSSDDKTSESPVESTRQRVNPLLNSYTDYEDSVYGLAWSSREPWV 329

Query: 69  FASLSYDGRVVVESVKPFLSR 89
           FASLSYDGRV++ESVKPFL R
Sbjct: 330 FASLSYDGRVIIESVKPFLPR 350

[Close]

BLAST of Carg21870 vs. Swiss-Prot
Match: sp|Q6NPN9|DWA2_ARATH (WD repeat-containing protein DWA2 OS=Arabidopsis thaliana OX=3702 GN=DWA2 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-27
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 68
           S GTDSAVNLW AS +     SE  +++ R  V+PLL+SY+DYEDSVYGLAWSSREPWIF
Sbjct: 270 SVGTDSAVNLWFASASSEHKTSESPVEASRQRVNPLLNSYTDYEDSVYGLAWSSREPWIF 329

Query: 69  ASLSYDGRVVVESVKPFLSR 89
           ASLSYDGRVV+ESVKPFL R
Sbjct: 330 ASLSYDGRVVIESVKPFLPR 349

[Close]

BLAST of Carg21870 vs. Swiss-Prot
Match: sp|Q6DUZ9|EIPR1_GEKJA (EARP-interacting protein homolog OS=Gekko japonicus OX=146911 GN=eipr1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 42  DPLLHSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV 83
           D ++ +Y ++EDSVY + WSS +PW+FASLSYDGR+V+  V
Sbjct: 337 DSIIATYEEHEDSVYAVEWSSADPWLFASLSYDGRLVINRV 377

[Close]

BLAST of Carg21870 vs. Swiss-Prot
Match: sp|Q3KPT3|EIPR1_XENLA (EARP-interacting protein homolog OS=Xenopus laevis OX=8355 GN=eipr1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 42  DPLLHSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV 83
           D ++ +Y ++EDSVY + WSS +PW+FASLSYDGR+V+  V
Sbjct: 337 DSIIGTYEEHEDSVYAVEWSSADPWLFASLSYDGRLVINRV 377

[Close]

BLAST of Carg21870 vs. Swiss-Prot
Match: sp|Q5M8I4|EIPR1_XENTR (EARP-interacting protein homolog OS=Xenopus tropicalis OX=8364 GN=eipr1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 42  DPLLHSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV 83
           D ++ +Y ++EDSVY + WSS +PW+FASLSYDGR+V+  V
Sbjct: 337 DSVIATYEEHEDSVYAVEWSSADPWLFASLSYDGRLVINRV 377

[Close]

BLAST of Carg21870 vs. Swiss-Prot
Match: sp|Q5XJP1|EIPR1_DANRE (EARP-interacting protein homolog OS=Danio rerio OX=7955 GN=eipr1 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-08
Identity = 22/41 (53.66%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 42  DPLLHSYSDYEDSVYGLAWSSREPWIFASLSYDGRVVVESV 83
           D ++ +Y ++EDSVY + WS+ +PW+FASLSYDGR+V+  V
Sbjct: 337 DSIISTYEEHEDSVYAVEWSAADPWLFASLSYDGRLVINRV 377

[Close]

BLAST of Carg21870 vs. TrEMBL
Match: tr|A0A1S3CMG4|A0A1S3CMG4_CUCME (WD repeat-containing protein DWA2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502632 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-31
Identity = 70/80 (87.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 68
           SAGTDSAVNLWLASM+D ELKSER +DS     DPLLHSYSDYEDSVYGLAWS REPWIF
Sbjct: 271 SAGTDSAVNLWLASMSDDELKSERKVDSSPRQGDPLLHSYSDYEDSVYGLAWSFREPWIF 330

Query: 69  ASLSYDGRVVVESVKPFLSR 89
           ASLSYDGRVVVESVKPFLSR
Sbjct: 331 ASLSYDGRVVVESVKPFLSR 350

[Close]

BLAST of Carg21870 vs. TrEMBL
Match: tr|A0A1S3CMK2|A0A1S3CMK2_CUCME (WD repeat-containing protein DWA2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502632 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-31
Identity = 70/80 (87.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 68
           SAGTDSAVNLWLASM+D ELKSER +DS     DPLLHSYSDYEDSVYGLAWS REPWIF
Sbjct: 243 SAGTDSAVNLWLASMSDDELKSERKVDSSPRQGDPLLHSYSDYEDSVYGLAWSFREPWIF 302

Query: 69  ASLSYDGRVVVESVKPFLSR 89
           ASLSYDGRVVVESVKPFLSR
Sbjct: 303 ASLSYDGRVVVESVKPFLSR 322

[Close]

BLAST of Carg21870 vs. TrEMBL
Match: tr|A0A0A0KDH1|A0A0A0KDH1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358120 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.9e-31
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 68
           SAGTDSAVNLWLASM+D E KSER +DS     DPLLHSYSDYEDSVYGLAWS REPWIF
Sbjct: 278 SAGTDSAVNLWLASMSDDEPKSERKVDSSPRQCDPLLHSYSDYEDSVYGLAWSFREPWIF 337

Query: 69  ASLSYDGRVVVESVKPFLSR 89
           ASLSYDGRVVVESVKPFLSR
Sbjct: 338 ASLSYDGRVVVESVKPFLSR 357

[Close]

BLAST of Carg21870 vs. TrEMBL
Match: tr|A0A059BWG4|A0A059BWG4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F03549 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 9.4e-29
Identity = 67/81 (82.72%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 9   SAGTDSAVNLWLAS-MTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWI 68
           SAGTDSAVNLW +S  +  EL SER IDSP   +DPLLHSY+DYEDSVYGLAWSSREPWI
Sbjct: 329 SAGTDSAVNLWWSSTASSDELISERLIDSPTRKLDPLLHSYNDYEDSVYGLAWSSREPWI 388

Query: 69  FASLSYDGRVVVESVKPFLSR 89
           FASLSYDGRVVVESVKPFLSR
Sbjct: 389 FASLSYDGRVVVESVKPFLSR 409

[Close]

BLAST of Carg21870 vs. TrEMBL
Match: tr|A0A1S2Y845|A0A1S2Y845_CICAR (WD repeat-containing protein DWA2-like isoform X2 OS=Cicer arietinum OX=3827 GN=LOC101489752 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.1e-28
Identity = 62/80 (77.50%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 9   SAGTDSAVNLWLASMTDGELKSERTIDSPRCPVDPLLHSYSDYEDSVYGLAWSSREPWIF 68
           SAGTDSAVNLWLAS+   +L +E   +SP   VDPLLH+YSDYEDS+YGL WSSREPWIF
Sbjct: 270 SAGTDSAVNLWLASINHEDLTTESQAESPVRVVDPLLHTYSDYEDSIYGLTWSSREPWIF 329

Query: 69  ASLSYDGRVVVESVKPFLSR 89
           ASLSYDGRVVVESVKPFLS+
Sbjct: 330 ASLSYDGRVVVESVKPFLSK 349

The following BLAST results are available for this feature:

BLAST of Carg21870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022999730.1	5.2e-39	100.00	WD repeat-containing protein DWA2-like [Cucurbita maxima]	[more]
XP_023547262.1	5.2e-39	100.00	WD repeat-containing protein DWA2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022946164.1	1.5e-38	98.75	WD repeat-containing protein DWA2-like [Cucurbita moschata]	[more]
XP_022153181.1	1.0e-31	87.50	WD repeat-containing protein DWA2 [Momordica charantia]	[more]
XP_008464867.1	2.3e-31	87.50	PREDICTED: WD repeat-containing protein DWA2-like isoform X1 [Cucumis melo]	[more]

BLAST of Carg21870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G76260.1	5.9e-29	72.50	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2	[more]
AT1G20540.1	5.9e-29	72.84	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Carg21870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NPN9\|DWA2_ARATH	1.1e-27	72.50	WD repeat-containing protein DWA2 OS=Arabidopsis thaliana OX=3702 GN=DWA2 PE=1 S...	[more]
sp\|Q6DUZ9\|EIPR1_GEKJA	1.1e-08	56.10	EARP-interacting protein homolog OS=Gekko japonicus OX=146911 GN=eipr1 PE=2 SV=1	[more]
sp\|Q3KPT3\|EIPR1_XENLA	1.1e-08	56.10	EARP-interacting protein homolog OS=Xenopus laevis OX=8355 GN=eipr1 PE=2 SV=1	[more]
sp\|Q5M8I4\|EIPR1_XENTR	1.4e-08	56.10	EARP-interacting protein homolog OS=Xenopus tropicalis OX=8364 GN=eipr1 PE=2 SV=...	[more]
sp\|Q5XJP1\|EIPR1_DANRE	1.9e-08	53.66	EARP-interacting protein homolog OS=Danio rerio OX=7955 GN=eipr1 PE=2 SV=1	[more]

BLAST of Carg21870 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CMG4\|A0A1S3CMG4_CUCME	1.5e-31	87.50	WD repeat-containing protein DWA2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3CMK2\|A0A1S3CMK2_CUCME	1.5e-31	87.50	WD repeat-containing protein DWA2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0KDH1\|A0A0A0KDH1_CUCSA	5.9e-31	86.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358120 PE=4 SV=1	[more]
tr\|A0A059BWG4\|A0A059BWG4_EUCGR	9.4e-29	82.72	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F03549 PE=4 SV...	[more]
tr\|A0A1S2Y845\|A0A1S2Y845_CICAR	6.1e-28	77.50	WD repeat-containing protein DWA2-like isoform X2 OS=Cicer arietinum OX=3827 GN=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21870-RA	Carg21870-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 2..84 e-value: 2.9E-9 score: 38.4
None	No IPR available	PANTHER	PTHR14205	WD-REPEAT PROTEIN	coord: 9..84

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21870	Silver-seed gourd	carcarB159
Carg21870	Silver-seed gourd	carcarB247
Carg21870	Silver-seed gourd	carcarB248
Carg21870	Cucumber (Gy14) v2	carcgybB0225
Carg21870	Cucumber (Gy14) v1	carcgyB0255
Carg21870	Cucurbita maxima (Rimu)	carcmaB0289
Carg21870	Cucurbita maxima (Rimu)	carcmaB0290
Carg21870	Cucurbita moschata (Rifu)	carcmoB0294
Carg21870	Cucurbita moschata (Rifu)	carcmoB0295
Carg21870	Cucurbita moschata (Rifu)	carcmoB0296
Carg21870	Cucurbita pepo (Zucchini)	carcpeB0297
Carg21870	Cucurbita pepo (Zucchini)	carcpeB0298
Carg21870	Cucurbita pepo (Zucchini)	carcpeB0299
Carg21870	Wild cucumber (PI 183967)	carcpiB0242
Carg21870	Cucumber (Chinese Long) v2	carcuB0236
Carg21870	Cucumber (Chinese Long) v3	carcucB0240
Carg21870	Bottle gourd (USVL1VR-Ls)	carlsiB188
Carg21870	Melon (DHL92) v3.5.1	carmeB0216
Carg21870	Melon (DHL92) v3.6.1	carmedB0221
Carg21870	Watermelon (Charleston Gray)	carwcgB0205
Carg21870	Watermelon (97103) v1	carwmB0199
Carg21870	Watermelon (97103) v2	carwmbB0214
Carg21870	Wax gourd	carwgoB0261