Carg21868 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21868
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L2, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_111 : 85607 .. 87148 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTAGGCTCGACCATACATAACATAAAAATCACACTTAGGAAGGCGGGACAATTAGCTAGAGCAGAAGGTGCAGTAACGAAACTGATGGCAAGAGATGGGAAATCGGCTACATTACCTTATGGGGAGATCCATTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATACTCGGTAAACCAGAAAAGTTTGGGTAGAGCAAGATCTAAATGTTGGGTAGGTAAGCGTCCTATAGTAAGAGGAGTAGTTACGAACCCAGCAGGAATTCTGCGGGGATTGTGAGGTTAAAGATGCATGAGGTGCATAGACCTCACTCGTGCATGTAATTGTGAGTGGCCAAGGTTCTTGGTGCGTGGATGGTGTGTGTTGGCTCGTGGAAGTTCATGTCAAGTCCCAGTTTGTCTCGTTCGATTGCTTTTGAATTAACGTAAGTCGTAAATAATAAATTAATTAAAATTATTTTTGTGTTGATATGGAACGTAATTTTGATGTGGAGAAGTTGGAGATAAGTCGTACATATCTGTCATGTTGTGTTGCTATTCAGTTCACGCGTCCTCATAATGATTTGCGCCCCTTGTTTGCCTCTGCACTGTTACCATAAACTATCAATTTAATACTCAAGTTTTTGGTTGGTTGTAGGGCCTTCATTTCATATTATTATCCTTATCATATCCATTTTTTGTTTGGATTTGTTTGAATCTTTAAATTTATTTGGAGTTCAGATTCGACACTTGATCTGAATCTTGGACATGGATCGATACAAATAGTATGAGAACGGTACCTCTCTCATTAAGATGTGGTTCGGGATGAACTAAGGTGGAAGTTAGTGGGCATGTGAGACTCATGTAAAACAACAGGGATACATGGATGAAGTGAGATCAGGTCAGAATGAGAGTGATCCTGAGTATAGGATGATTGAGAAACGTGAACAGAGGTGAGTTCATGTGAGTTTTCATTCTTAGAAGCGAGGAGTAAGTAACGTGAACAGGGGATGCAGAGTGTAACAGTCAAAGCCCACCACTGGTAGATATTGTCAAGTTTGGCCCATTACGTATTATCGTCAGTCTCACAGTTTTAAAAACACGTTTACATATTGTTCTCACTGGCACACCGCCCAATGTCTAACTCTGATACCATTTATAACAGCCCGACTCCACCGCTAGTAGATATTGTCCTCTTTGGCTCGTAGACGCATTCTAAAACCATGAGGTTGACGACAATACGTAACAAGTTAAAGCAGACAACATCGACTGGTGATGGGCTTGAGCTGTTACACAAGGGAACGCCGAAACCATCAAATTTCGAATCTGAATTACAAATCCTGGACATGGGTCATTATAACTTCAGCCCGAAATCACTCGACTAATTTAGCATTTTATAGAAATGAAATAGAAATGAATAACAATGAAAAGAATGATTCACTATTAGTGTGAGATAAGCTACTCTCATTACCCATTTGTCCAATTCGACGCTCGTTATCCTTATTGTTCTTTCTATTAGATCCCATAGCTCTGACCATAAACTATAG

mRNA sequence

ATGCCCTTAGGCTCGACCATACATAACATAAAAATCACACTTAGGAAGGCGGGACAATTAGCTAGAGCAGAAGGTGCAGTAACGAAACTGATGGCAAGAGATGGGAAATCGGCTACATTACCTTATGGGGAGATCCATTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATACTCGATCCCATAGCTCTGACCATAAACTATAG

Coding sequence (CDS)

ATGCCCTTAGGCTCGACCATACATAACATAAAAATCACACTTAGGAAGGCGGGACAATTAGCTAGAGCAGAAGGTGCAGTAACGAAACTGATGGCAAGAGATGGGAAATCGGCTACATTACCTTATGGGGAGATCCATTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATACTCGATCCCATAGCTCTGACCATAAACTATAG

Protein sequence

MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSATLPYGEIHLISKNCSATVGQVGNTRSHSSDHKL

Homology

[Close]

BLAST of Carg21868 vs. NCBI nr
Match: YP_009271423.1 (ribosomal protein L2 (chloroplast) [Taraxacum officinale] >YP_009271447.1 ribosomal protein L2 (chloroplast) [Taraxacum officinale] >YP_009307520.1 ribosomal protein L2 (chloroplast) [Taraxacum platycarpum] >YP_009307544.1 ribosomal protein L2 (chloroplast) [Taraxacum platycarpum] >YP_009316587.1 ribosomal protein L2 (chloroplast) [Taraxacum obtusifrons] >YP_009316672.1 ribosomal protein L2 (chloroplast) [Taraxacum amplum] >YP_009316695.1 ribosomal protein L2 (chloroplast) [Taraxacum amplum] >YP_009327546.1 ribosomal protein L2 (chloroplast) [Taraxacum brevicorniculatum] >ANW47916.1 ribosomal protein L2 (chloroplast) [Taraxacum officinale] >ANW47941.1 ribosomal protein L2 (chloroplast) [Taraxacum officinale] >AOR82266.1 ribosomal protein L2 (chloroplast) [Taraxacum platycarpum] >AOR82291.1 ribosomal protein L2 (chloroplast) [Taraxacum platycarpum] >AOV93726.1 ribosomal protein L2 (chloroplast) [Taraxacum sp. RHS-2016] >AOV93811.1 ribosomal protein L2 (chloroplast) [Taraxacum obtusifrons] >AOV93896.1 ribosomal protein L2 (chloroplast) [Taraxacum amplum] >AOV93897.1 ribosomal protein L2 (chloroplast) [Taraxacum amplum] >APA33673.1 ribosomal protein L2 (chloroplast) [Taraxacum brevicorniculatum] >APA33818.1 ribosomal protein L2 (chloroplast) [Taraxacum officinale])

HSP 1 Score: 95.9 bits (237), Expect = 5.9e-17
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+TIHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GEI LISKNCSATVGQ
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEIRLISKNCSATVGQ 192

Query: 61  VGN 62
           VGN
Sbjct: 193 VGN 195

[Close]

BLAST of Carg21868 vs. NCBI nr
Match: YP_009307607.1 (ribosomal protein L2 (chloroplast) [Taraxacum mongolicum] >YP_009307631.1 ribosomal protein L2 (chloroplast) [Taraxacum mongolicum] >AOR82353.1 ribosomal protein L2 (chloroplast) [Taraxacum mongolicum] >AOR82378.1 ribosomal protein L2 (chloroplast) [Taraxacum mongolicum])

HSP 1 Score: 95.9 bits (237), Expect = 5.9e-17
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+TIHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GEI LISKNCSATVGQ
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEIRLISKNCSATVGQ 192

Query: 61  VGN 62
           VGN
Sbjct: 193 VGN 195

[Close]

BLAST of Carg21868 vs. NCBI nr
Match: YP_009327528.1 (ribosomal protein L2 (chloroplast) [Taraxacum brevicorniculatum] >APA33654.1 ribosomal protein L2 (chloroplast) [Taraxacum brevicorniculatum])

HSP 1 Score: 95.9 bits (237), Expect = 5.9e-17
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+TIHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GEI LISKNCSATVGQ
Sbjct: 134 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEIRLISKNCSATVGQ 193

Query: 61  VGN 62
           VGN
Sbjct: 194 VGN 196

[Close]

BLAST of Carg21868 vs. NCBI nr
Match: YP_009327610.1 (ribosomal protein L2 (chloroplast) [Taraxacum kok-saghyz] >YP_009327628.1 ribosomal protein L2 (chloroplast) [Taraxacum kok-saghyz] >APA33736.1 ribosomal protein L2 (chloroplast) [Taraxacum kok-saghyz] >APA33755.1 ribosomal protein L2 (chloroplast) [Taraxacum kok-saghyz] >APA33837.1 ribosomal protein L2 (chloroplast) [Taraxacum officinale])

HSP 1 Score: 95.9 bits (237), Expect = 5.9e-17
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+TIHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GEI LISKNCSATVGQ
Sbjct: 134 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEIRLISKNCSATVGQ 193

Query: 61  VGN 62
           VGN
Sbjct: 194 VGN 196

[Close]

BLAST of Carg21868 vs. NCBI nr
Match: AFU96030.1 (Rpl2, partial (chloroplast) [Euphorbia maculata])

HSP 1 Score: 95.5 bits (236), Expect = 7.7e-17
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+ IHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GE+ LISKNCSATVGQ
Sbjct: 139 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 198

Query: 61  VGNT 63
           VGNT
Sbjct: 199 VGNT 202

[Close]

BLAST of Carg21868 vs. TAIR10
Match: ATCG00830.1 (ribosomal protein L2)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+ IHNI+ITL + GQLARA GAV KL+A++GKSAT  LP GE+ LISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGN 62
           VGN
Sbjct: 193 VGN 195

[Close]

BLAST of Carg21868 vs. TAIR10
Match: ATCG01310.1 (ribosomal protein L2)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-19
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+ IHNI+ITL + GQLARA GAV KL+A++GKSAT  LP GE+ LISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGN 62
           VGN
Sbjct: 193 VGN 195

[Close]

BLAST of Carg21868 vs. Swiss-Prot
Match: sp|B1NWJ1|RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-19
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+ IHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GE+ LISKNCSATVGQ
Sbjct: 136 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 195

Query: 61  VGNT 63
           VGNT
Sbjct: 196 VGNT 199

[Close]

BLAST of Carg21868 vs. Swiss-Prot
Match: sp|Q06GJ5|RK2_PIPCE (50S ribosomal protein L2, chloroplastic OS=Piper cenocladum OX=398741 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.3e-19
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+ IHNI+ITL K GQLARA GAV+KL+A++GKSAT  LP GE+ LISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLEKGGQLARAAGAVSKLIAKEGKSATLRLPSGEVRLISKNCSATVGQ 192

Query: 61  VGN 62
           VGN
Sbjct: 193 VGN 195

[Close]

BLAST of Carg21868 vs. Swiss-Prot
Match: sp|Q8S8V3|RK2A_ATRBE (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.5e-19
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+ IHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GE+ LISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGN 62
           VGN
Sbjct: 193 VGN 195

[Close]

BLAST of Carg21868 vs. Swiss-Prot
Match: sp|A6MMG4|RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus OX=13006 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.5e-19
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+ IHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GE+ LISKNCSATVGQ
Sbjct: 135 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQ 194

Query: 61  VGN 62
           VGN
Sbjct: 195 VGN 197

[Close]

BLAST of Carg21868 vs. Swiss-Prot
Match: sp|A0A377|RK2A_COFAR (50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.5e-19
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+ IHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GE+ LISKNCSATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGN 62
           VGN
Sbjct: 193 VGN 195

[Close]

BLAST of Carg21868 vs. TrEMBL
Match: tr|A0A1D8MPY4|A0A1D8MPY4_9ASTR (50S ribosomal protein L2, chloroplastic OS=Taraxacum amplum OX=1220049 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-17
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+TIHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GEI LISKNCSATVGQ
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEIRLISKNCSATVGQ 192

Query: 61  VGN 62
           VGN
Sbjct: 193 VGN 195

[Close]

BLAST of Carg21868 vs. TrEMBL
Match: tr|A0A1I9WKT5|A0A1I9WKT5_TARKO (50S ribosomal protein L2, chloroplastic OS=Taraxacum kok-saghyz OX=333970 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-17
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+TIHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GEI LISKNCSATVGQ
Sbjct: 134 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEIRLISKNCSATVGQ 193

Query: 61  VGN 62
           VGN
Sbjct: 194 VGN 196

[Close]

BLAST of Carg21868 vs. TrEMBL
Match: tr|A0A1B1W563|A0A1B1W563_TAROF (50S ribosomal protein L2, chloroplastic OS=Taraxacum officinale OX=50225 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-17
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+TIHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GEI LISKNCSATVGQ
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEIRLISKNCSATVGQ 192

Query: 61  VGN 62
           VGN
Sbjct: 193 VGN 195

[Close]

BLAST of Carg21868 vs. TrEMBL
Match: tr|A0A1I9WKK3|A0A1I9WKK3_9ASTR (50S ribosomal protein L2, chloroplastic OS=Taraxacum brevicorniculatum OX=1262544 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-17
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+TIHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GEI LISKNCSATVGQ
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEIRLISKNCSATVGQ 192

Query: 61  VGN 62
           VGN
Sbjct: 193 VGN 195

[Close]

BLAST of Carg21868 vs. TrEMBL
Match: tr|A0A1I9WKI4|A0A1I9WKI4_9ASTR (50S ribosomal protein L2, chloroplastic OS=Taraxacum brevicorniculatum OX=1262544 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-17
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1   MPLGSTIHNIKITLRKAGQLARAEGAVTKLMARDGKSAT--LPYGEIHLISKNCSATVGQ 60
           MPLG+TIHNI+ITL K GQLARA GAV KL+A++GKSAT  LP GEI LISKNCSATVGQ
Sbjct: 134 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEIRLISKNCSATVGQ 193

Query: 61  VGN 62
           VGN
Sbjct: 194 VGN 196

The following BLAST results are available for this feature:

BLAST of Carg21868 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009271423.1	5.9e-17	79.37	ribosomal protein L2 (chloroplast) [Taraxacum officinale] >YP_009271447.1 riboso...	[more]
YP_009307607.1	5.9e-17	79.37	ribosomal protein L2 (chloroplast) [Taraxacum mongolicum] >YP_009307631.1 riboso...	[more]
YP_009327528.1	5.9e-17	79.37	ribosomal protein L2 (chloroplast) [Taraxacum brevicorniculatum] >APA33654.1 rib...	[more]
YP_009327610.1	5.9e-17	79.37	ribosomal protein L2 (chloroplast) [Taraxacum kok-saghyz] >YP_009327628.1 riboso...	[more]
AFU96030.1	7.7e-17	76.56	Rpl2, partial (chloroplast) [Euphorbia maculata]	[more]

BLAST of Carg21868 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00830.1	1.2e-19	74.60	ribosomal protein L2	[more]
ATCG01310.1	1.2e-19	74.60	ribosomal protein L2	[more]

BLAST of Carg21868 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B1NWJ1\|RK2_MANES	2.5e-19	76.56	50S ribosomal protein L2, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl2-A P...	[more]
sp\|Q06GJ5\|RK2_PIPCE	4.3e-19	76.19	50S ribosomal protein L2, chloroplastic OS=Piper cenocladum OX=398741 GN=rpl2-A ...	[more]
sp\|Q8S8V3\|RK2A_ATRBE	9.5e-19	76.19	50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-...	[more]
sp\|A6MMG4\|RK2A_CHLSC	9.5e-19	76.19	50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus OX=13006 GN=rp...	[more]
sp\|A0A377\|RK2A_COFAR	9.5e-19	76.19	50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-A P...	[more]

BLAST of Carg21868 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1D8MPY4\|A0A1D8MPY4_9ASTR	3.9e-17	79.37	50S ribosomal protein L2, chloroplastic OS=Taraxacum amplum OX=1220049 GN=rpl2 P...	[more]
tr\|A0A1I9WKT5\|A0A1I9WKT5_TARKO	3.9e-17	79.37	50S ribosomal protein L2, chloroplastic OS=Taraxacum kok-saghyz OX=333970 GN=rpl...	[more]
tr\|A0A1B1W563\|A0A1B1W563_TAROF	3.9e-17	79.37	50S ribosomal protein L2, chloroplastic OS=Taraxacum officinale OX=50225 GN=rpl2...	[more]
tr\|A0A1I9WKK3\|A0A1I9WKK3_9ASTR	3.9e-17	79.37	50S ribosomal protein L2, chloroplastic OS=Taraxacum brevicorniculatum OX=126254...	[more]
tr\|A0A1I9WKI4\|A0A1I9WKI4_9ASTR	3.9e-17	79.37	50S ribosomal protein L2, chloroplastic OS=Taraxacum brevicorniculatum OX=126254...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR008991	Translation_prot_SH3-like_sf
IPR002171	Ribosomal_L2
IPR014722	Rib_L2_dom2
IPR022669	Ribosomal_L2_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21868-RA	Carg21868-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 1..71 e-value: 8.1E-5 score: -18.1
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 1..66 e-value: 2.3E-14 score: 53.6
IPR014722	Ribosomal protein L2, domain 2	GENE3D	G3DSA:2.30.30.30		coord: 1..61 e-value: 3.2E-17 score: 64.1
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 1..62
None	No IPR available	PANTHER	PTHR13691:SF25	SUBFAMILY NOT NAMED	coord: 1..62
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	SSF50104	Translation proteins SH3-like domain	coord: 1..64

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21868	Wax gourd	carwgoB0261
Carg21868	Silver-seed gourd	carcarB159
Carg21868	Silver-seed gourd	carcarB247
Carg21868	Silver-seed gourd	carcarB248
Carg21868	Cucumber (Gy14) v2	carcgybB0225
Carg21868	Cucumber (Gy14) v1	carcgyB0255
Carg21868	Cucurbita maxima (Rimu)	carcmaB0289
Carg21868	Cucurbita maxima (Rimu)	carcmaB0290
Carg21868	Cucurbita moschata (Rifu)	carcmoB0294
Carg21868	Cucurbita moschata (Rifu)	carcmoB0295
Carg21868	Cucurbita moschata (Rifu)	carcmoB0296
Carg21868	Cucurbita pepo (Zucchini)	carcpeB0297
Carg21868	Cucurbita pepo (Zucchini)	carcpeB0298
Carg21868	Cucurbita pepo (Zucchini)	carcpeB0299
Carg21868	Wild cucumber (PI 183967)	carcpiB0242
Carg21868	Cucumber (Chinese Long) v2	carcuB0236
Carg21868	Cucumber (Chinese Long) v3	carcucB0240
Carg21868	Bottle gourd (USVL1VR-Ls)	carlsiB188
Carg21868	Melon (DHL92) v3.5.1	carmeB0216
Carg21868	Melon (DHL92) v3.6.1	carmedB0221
Carg21868	Watermelon (Charleston Gray)	carwcgB0205
Carg21868	Watermelon (97103) v1	carwmB0199
Carg21868	Watermelon (97103) v2	carwmbB0214