Carg21862 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21862
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_111 : 40609 .. 41650 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACGCCGAGAACAAGAAGCTCGAGGAGGGTGCCGGTGAGGGCGCCGTCGAGGCTAAGGATCGTGGGTTGTTTGATTTCTTGGGGAAGAACAAGGAGAAGGAGGAGGAAAAGCCTCCTCAAGTTGTAGCTCCACCGGAGGAGGTGGTGGTTGTTAGTGAACAATTTGAGAAAATTGAGGTTTCTGAACCTCCGCCGCCGGTTCATAAGGTGGAGGAAGAAGAGAAGAAGCCTAGCTTGTTGGAGAAGCTCCACCGATCCGATAGCAGCTCTAGCTCGGTAAGTTGTAATTGATTCATCGATCTTAACGAATAATCGAATTGGAATGAATTTGTATGTTTCATGATTATTAGAAATGCTCCCGATTAATAAATCATGTAAAAACTAGATCATGTGACAAGTATGTCGTTATGGTTAGAAATCACGACTCTTCACAATGATATGATACTGTCCAATTTGAGCATTAGCTCTAGTGGGTGGCTTTGGTTTGGGCTCACCCAAGAGGACTCGTACCAATGGAGATGTATTCATTACTTATGAACTCATGATCATTCTCTAAATTAGTCTGGGACTCCTTCTAAACAATCCTCAACACTTGTAATATAACACGTAATTAGAATTTGACTTCTGACATGTTGGGTATGGTTTGCAGTCGAGCGATGAAGAAGGAGAAGACGGGGAGAAGAAGAAGAAGAAGAAGAAGAAGGGTTTAAAGGAGAAGTTGAAGGAAAAGCTCGGAGGAGGAGAAGAGGAGAAGAAGGAAGAAGCGGTCGCCATCCCGGTTGAGAAGGTAGACGACGATGCACATCCCGAGGAAAAGAAAGGGTTTCTAGACAAGATCAAGGAGAAGCTTCCGGGGCACGGCAAGAAGCCCGAGGAAGCTCCGTCGGCTCCGGAGGCACACTCCGGGGAGCCAGTGTCTCATCCCGAGGAGGAGGGGAAGGAAAAGAAGGGATTTTTGGAGAAGATCAAGGAGAAACTCCCAGGCTACCATGGCAAGGAGGAAGAGAAGCACAAGGAGGAAGCAGGGTCTCATTGA

mRNA sequence

ATGGCCGACGCCGAGAACAAGAAGCTCGAGGAGGGTGCCGGTGAGGGCGCCGTCGAGGCTAAGGATCGTGGGTTGTTTGATTTCTTGGGGAAGAACAAGGAGAAGGAGGAGGAAAAGCCTCCTCAAGTTGTAGCTCCACCGGAGGAGGTGGTGGTTGTTAGTGAACAATTTGAGAAAATTGAGGTTTCTGAACCTCCGCCGCCGGTTCATAAGGTGGAGGAAGAAGAGAAGAAGCCTAGCTTGTTGGAGAAGCTCCACCGATCCGATAGCAGCTCTAGCTCGTCGAGCGATGAAGAAGGAGAAGACGGGGAGAAGAAGAAGAAGAAGAAGAAGAAGGGTTTAAAGGAGAAGTTGAAGGAAAAGCTCGGAGGAGGAGAAGAGGAGAAGAAGGAAGAAGCGGTCGCCATCCCGGTTGAGAAGGTAGACGACGATGCACATCCCGAGGAAAAGAAAGGGTTTCTAGACAAGATCAAGGAGAAGCTTCCGGGGCACGGCAAGAAGCCCGAGGAAGCTCCGTCGGCTCCGGAGGCACACTCCGGGGAGCCAGTGTCTCATCCCGAGGAGGAGGGGAAGGAAAAGAAGGGATTTTTGGAGAAGATCAAGGAGAAACTCCCAGGCTACCATGGCAAGGAGGAAGAGAAGCACAAGGAGGAAGCAGGGTCTCATTGA

Coding sequence (CDS)

ATGGCCGACGCCGAGAACAAGAAGCTCGAGGAGGGTGCCGGTGAGGGCGCCGTCGAGGCTAAGGATCGTGGGTTGTTTGATTTCTTGGGGAAGAACAAGGAGAAGGAGGAGGAAAAGCCTCCTCAAGTTGTAGCTCCACCGGAGGAGGTGGTGGTTGTTAGTGAACAATTTGAGAAAATTGAGGTTTCTGAACCTCCGCCGCCGGTTCATAAGGTGGAGGAAGAAGAGAAGAAGCCTAGCTTGTTGGAGAAGCTCCACCGATCCGATAGCAGCTCTAGCTCGTCGAGCGATGAAGAAGGAGAAGACGGGGAGAAGAAGAAGAAGAAGAAGAAGAAGGGTTTAAAGGAGAAGTTGAAGGAAAAGCTCGGAGGAGGAGAAGAGGAGAAGAAGGAAGAAGCGGTCGCCATCCCGGTTGAGAAGGTAGACGACGATGCACATCCCGAGGAAAAGAAAGGGTTTCTAGACAAGATCAAGGAGAAGCTTCCGGGGCACGGCAAGAAGCCCGAGGAAGCTCCGTCGGCTCCGGAGGCACACTCCGGGGAGCCAGTGTCTCATCCCGAGGAGGAGGGGAAGGAAAAGAAGGGATTTTTGGAGAAGATCAAGGAGAAACTCCCAGGCTACCATGGCAAGGAGGAAGAGAAGCACAAGGAGGAAGCAGGGTCTCATTGA

Protein sequence

MADAENKKLEEGAGEGAVEAKDRGLFDFLGKNKEKEEEKPPQVVAPPEEVVVVSEQFEKIEVSEPPPPVHKVEEEEKKPSLLEKLHRSDSSSSSSSDEEGEDGEKKKKKKKKGLKEKLKEKLGGGEEEKKEEAVAIPVEKVDDDAHPEEKKGFLDKIKEKLPGHGKKPEEAPSAPEAHSGEPVSHPEEEGKEKKGFLEKIKEKLPGYHGKEEEKHKEEAGSH

Homology

[Close]

BLAST of Carg21862 vs. NCBI nr
Match: XP_022946495.1 (dehydrin ERD14-like [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 7.0e-08
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1  MADAENKKLEEGAGEGAVEAKDRGLFDFLGKNK 34
          MADAENKKLEEGAGEGAVEAKDRGLFDFLGKNK
Sbjct: 1  MADAENKKLEEGAGEGAVEAKDRGLFDFLGKNK 33

[Close]

BLAST of Carg21862 vs. NCBI nr
Match: XP_022999767.1 (dehydrin ERD14-like [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 7.0e-08
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1  MADAENKKLEEGAGEGAVEAKDRGLFDFLGKNK 34
          MADAENKKLEEGAGEGAVEAKDRGLFDFLGKNK
Sbjct: 1  MADAENKKLEEGAGEGAVEAKDRGLFDFLGKNK 33

[Close]

BLAST of Carg21862 vs. NCBI nr
Match: XP_023546388.1 (dehydrin ERD14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.4 bits (163), Expect = 7.0e-08
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 1  MADAENKKLEEGAGEGAVEAKDRGLFDFLGKNK 34
          MADAENKKLEEGAGEGAVEAKDRGLFDFLGKNK
Sbjct: 1  MADAENKKLEEGAGEGAVEAKDRGLFDFLGKNK 33

The following BLAST results are available for this feature:

BLAST of Carg21862 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946495.1	7.0e-08	100.00	dehydrin ERD14-like [Cucurbita moschata]	[more]
XP_022999767.1	7.0e-08	100.00	dehydrin ERD14-like [Cucurbita maxima]	[more]
XP_023546388.1	7.0e-08	100.00	dehydrin ERD14-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg21862 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg21862 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg21862 vs. TrEMBL


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009415	response to water
GO:0006950	response to stress

Vocabulary: **INTERPRO**
Term	Definition
IPR030513	Dehydrin_CS
IPR000167	Dehydrin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
biological_process	GO:0009415	response to water
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21862-RA	Carg21862-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000167	Dehydrin	PFAM	PF00257	Dehydrin	coord: 71..165 e-value: 8.9E-19 score: 68.6
IPR000167	Dehydrin	PANTHER	PTHR33346	FAMILY NOT NAMED	coord: 1..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..222
None	No IPR available	PANTHER	PTHR33346:SF2	DEHYDRIN COR47-RELATED	coord: 1..215
IPR030513	Dehydrin, conserved site	PROSITE	PS00823	DEHYDRIN_2	coord: 199..206
IPR030513	Dehydrin, conserved site	PROSITE	PS00315	DEHYDRIN_1	coord: 92..110

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21862	Cla021949	Watermelon (97103) v1	carwmB0199
Carg21862	Csa6G358710	Cucumber (Chinese Long) v2	carcuB0236
Carg21862	MELO3C026550	Melon (DHL92) v3.5.1	carmeB0216
Carg21862	ClCG08G009610	Watermelon (Charleston Gray)	carwcgB0205
Carg21862	CSPI06G18820	Wild cucumber (PI 183967)	carcpiB0242
Carg21862	Cucsa.077690	Cucumber (Gy14) v1	carcgyB0255
Carg21862	CmaCh05G009950	Cucurbita maxima (Rimu)	carcmaB0290
Carg21862	CmoCh05G010130	Cucurbita moschata (Rifu)	carcmoB0296
Carg21862	Lsi08G008060	Bottle gourd (USVL1VR-Ls)	carlsiB188
Carg21862	Cp4.1LG11g07990	Cucurbita pepo (Zucchini)	carcpeB0297
Carg21862	CsGy6G018260	Cucumber (Gy14) v2	carcgybB0225
Carg21862	MELO3C026550.2	Melon (DHL92) v3.6.1	carmedB0221
Carg21862	CsaV3_6G031720	Cucumber (Chinese Long) v3	carcucB0240
Carg21862	Cla97C08G152370	Watermelon (97103) v2	carwmbB0214
Carg21862	Bhi04G001222	Wax gourd	carwgoB0261

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None