Carg21858 (gene) Silver-seed gourd

Overview
NameCarg21858
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptiontrihelix transcription factor GT-1
LocationCucurbita_argyrosperma_scaffold_192 : 293279 .. 294472 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCGAAGAAGCGGGCGGAGACCTGGGTTCAGGATGAGACTCGAAGCTTAATTTCCCTACGCCGGGAGATGGATGGTTTGTTCAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGCTTTGATCGCTCTCCGACTATGTGTACTGACAAATGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCAAAGCACCATGATAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGCCCCACGCCACCCAAGATTGATTCATATATTCAATTCTCGGACAAAGGTAACCTTCGGTTCTTGGCTTTGAGAGGGTGAATGGGGTAATCTAATATCCGGCTCTTTAAGAAGAAGAAGAAGAAGAAGAAAATGCTATTCCAATAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTGAATGCACAATTCAATATTCTGGAGAATCCATTAGCCACAATTTGTAGGTCTTCATAGTTCATTCATTGTATGTCCATAGCCTGCCGTCATGATTCTTGGCAAACTTATTCTTTCAAACATGCATTGTTCTGGTATATGAACCATGATACTAGGCTACCATTCCTAAAAGGGTTCAGCTGTATGAATAGAGATATCTGGATTTGGAAATGATATATCCAACTGAAGTTGGTAGACTAGAAAATTTTAACAGGTTACTCATTTTGTTGTTTCTATTGTTCTTGGGGGGTGGGGAATCGTCTTTGTTTCCTGAATTTGTTTCTTAAACAGGTAGAAGTTTCGAATTGCTATTTTTGGGGCCTGCATTCTTTAAGTCTGTTGAATATGATGTGCAAATAGTAGGTGCAGTAGGGTTATGATTAGTCTGGCTCTGGGGTCACGAGAGGACTGTGATGAGCATTGTAATTTTATTCCAATGCAGGAATAGAGGATAATGGTCTAACGTTCGGACCCGTTGAA

mRNA sequence

ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCGAAGAAGCGGGCGGAGACCTGGGTTCAGGATGAGACTCGAAGCTTAATTTCCCTACGCCGGGAGATGGATGGTTTGTTCAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGCTTTGATCGCTCTCCGACTATGTGTACTGACAAATGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCAAAGCACCATGATAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGCCCCACGCCACCCAAGATTGATTCATATATTCAATTCTCGGACAAAGGAATAGAGGATAATGGTCTAACGTTCGGACCCGTTGAA

Coding sequence (CDS)

ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCGAAGAAGCGGGCGGAGACCTGGGTTCAGGATGAGACTCGAAGCTTAATTTCCCTACGCCGGGAGATGGATGGTTTGTTCAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGCTTTGATCGCTCTCCGACTATGTGTACTGACAAATGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCAAAGCACCATGATAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGCCCCACGCCACCCAAGATTGATTCATATATTCAATTCTCGGACAAAGGAATAGAGGATAATGGTCTAACGTTCGGACCCGTTGAA

Protein sequence

MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKGIEDNGLTFGPVE
Homology
[Close]
BLAST of Carg21858 vs. NCBI nr
Match: XP_022961941.1 (trihelix transcription factor GT-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 394.8 bits (1013), Expect = 1.7e-106
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK 60
           MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK
Sbjct: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK 60

Query: 61  APKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK 120
           APKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK
Sbjct: 61  APKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK 120

Query: 121 WRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKG 180
           WRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQF+DKG
Sbjct: 121 WRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFADKG 180

Query: 181 IEDNGLTFGPVE 193
           IEDNGLTFGPVE
Sbjct: 181 IEDNGLTFGPVE 192

[Close]
BLAST of Carg21858 vs. NCBI nr
Match: XP_022996917.1 (trihelix transcription factor GT-1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 393.7 bits (1010), Expect = 3.7e-106
Identity = 190/192 (98.96%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK 60
           MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK
Sbjct: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK 60

Query: 61  APKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK 120
           APKKRAETWVQDETRSLI+LRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK
Sbjct: 61  APKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK 120

Query: 121 WRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKG 180
           WRNLLKEFKKAKHHDRGSG+AKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKG
Sbjct: 121 WRNLLKEFKKAKHHDRGSGTAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKG 180

Query: 181 IEDNGLTFGPVE 193
           IEDNGLTFGPVE
Sbjct: 181 IEDNGLTFGPVE 192

[Close]
BLAST of Carg21858 vs. NCBI nr
Match: XP_023545966.1 (trihelix transcription factor GT-1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.1 bits (993), Expect = 3.5e-104
Identity = 188/192 (97.92%), Postives = 189/192 (98.44%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK 60
           MYLSDKPRPIDIYKEE SRDMMIEVASN DHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK
Sbjct: 1   MYLSDKPRPIDIYKEEASRDMMIEVASNADHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK 60

Query: 61  APKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK 120
           APKKRAETWVQDETRSLI+LRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK
Sbjct: 61  APKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK 120

Query: 121 WRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKG 180
           WRNLLKEFKKAKH DRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKG
Sbjct: 121 WRNLLKEFKKAKHQDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKG 180

Query: 181 IEDNGLTFGPVE 193
           IEDNGLTFGPVE
Sbjct: 181 IEDNGLTFGPVE 192

[Close]
BLAST of Carg21858 vs. NCBI nr
Match: XP_023545965.1 (trihelix transcription factor GT-1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.1 bits (993), Expect = 3.5e-104
Identity = 188/192 (97.92%), Postives = 189/192 (98.44%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK 60
           MYLSDKPRPIDIYKEE SRDMMIEVASN DHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK
Sbjct: 1   MYLSDKPRPIDIYKEEASRDMMIEVASNADHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK 60

Query: 61  APKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK 120
           APKKRAETWVQDETRSLI+LRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK
Sbjct: 61  APKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK 120

Query: 121 WRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKG 180
           WRNLLKEFKKAKH DRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKG
Sbjct: 121 WRNLLKEFKKAKHQDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKG 180

Query: 181 IEDNGLTFGPVE 193
           IEDNGLTFGPVE
Sbjct: 181 IEDNGLTFGPVE 192

[Close]
BLAST of Carg21858 vs. NCBI nr
Match: XP_022951166.1 (trihelix transcription factor GT-1-like [Cucurbita moschata] >XP_023002679.1 trihelix transcription factor GT-1-like [Cucurbita maxima])

HSP 1 Score: 383.3 bits (983), Expect = 5.0e-103
Identity = 186/192 (96.88%), Postives = 188/192 (97.92%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVK 60
           MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQ THQQHQMMLGDSSGEDHEVK
Sbjct: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQQTHQQHQMMLGDSSGEDHEVK 60

Query: 61  APKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK 120
           APKKRAETWVQDETRSLISLRR MDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK
Sbjct: 61  APKKRAETWVQDETRSLISLRRGMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDK 120

Query: 121 WRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKG 180
           WRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSK+ QYKSPTPPKIDSYIQFSDKG
Sbjct: 121 WRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKNAQYKSPTPPKIDSYIQFSDKG 180

Query: 181 IEDNGLTFGPVE 193
           IEDN L+FGPVE
Sbjct: 181 IEDNALSFGPVE 192

[Close]
BLAST of Carg21858 vs. TAIR10
Match: AT1G13450.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 240.0 bits (611), Expect = 1.2e-63
Identity = 121/151 (80.13%), Postives = 134/151 (88.74%), Query Frame = 0 

Query: 50  GDSSGEDHEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERG 109
           G+SSGEDHEVKAPKKRAETWVQDETRSLI  RR MDGLFNTSKSNKHLWEQIS+KMRE+G
Sbjct: 68  GESSGEDHEVKAPKKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKG 127

Query: 110 FDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKST---QY-KSP 169
           FDRSPTMCTDKWRNLLKEFKKAKHHDRG+GSAKMSYYKEIE+IL+ERSK     QY KSP
Sbjct: 128 FDRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDILRERSKKVTPPQYNKSP 187

Query: 170 -TPP---KIDSYIQFSDKGIEDNGLTFGPVE 193
            TPP   K+DS++QF+DKG +D  ++FG VE
Sbjct: 188 NTPPTSAKVDSFMQFTDKGFDDTSISFGSVE 218

[Close]
BLAST of Carg21858 vs. TAIR10
Match: AT3G25990.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 221.9 bits (564), Expect = 3.5e-58
Identity = 129/206 (62.62%), Postives = 150/206 (72.82%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRD--MMI-EVASNGDHHIQPHQPQPTHQQHQMMLGDSS-GED 60
           M++SD   P        SRD  MMI +V SNGD  +QP         HQ++LG+SS GED
Sbjct: 1   MFVSDNNNP--------SRDINMMIGDVTSNGD--LQP---------HQIILGESSGGED 60

Query: 61  HE-VKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPT 120
           HE +KAPKKRAETW QDETR+LISLRREMD LFNTSKSNKHLWEQIS KMRE+GFDRSP+
Sbjct: 61  HEIIKAPKKRAETWAQDETRTLISLRREMDNLFNTSKSNKHLWEQISKKMREKGFDRSPS 120

Query: 121 MCTDKWRNLLKEFKKAKHHD---RGSGSAKMSYYKEIEEILKERSKSTQ-YKSP---TP- 180
           MCTDKWRN+LKEFKKAK H+      GS KMSYY EIE+I +ER K    YKSP   TP 
Sbjct: 121 MCTDKWRNILKEFKKAKQHEDKATSGGSTKMSYYNEIEDIFRERKKKVAFYKSPATTTPS 180

Query: 181 -PKIDSYIQFSDKGIEDNGLTFGPVE 193
             K+DS++QF+DKG ED G++F  VE
Sbjct: 181 SAKVDSFMQFTDKGFEDTGISFTSVE 187

[Close]
BLAST of Carg21858 vs. TAIR10
Match: AT5G01380.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 9.0e-14
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 0 

Query: 65  RAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNL 124
           R   W  +ET+ L+++R E+D  F  +K NK LWE ++AKM ++GF RS   C  KW+NL
Sbjct: 48  RIPQWSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNL 107

Query: 125 LKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPP 169
           +  +K  +  +  +   +  +Y EI+ I + R +   +   T P
Sbjct: 108 VTRYKACETTEPDAIRQQFPFYNEIQSIFEARMQRMLWSEATEP 151

[Close]
BLAST of Carg21858 vs. TAIR10
Match: AT2G38250.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 7.6e-13
Identity = 43/132 (32.58%), Postives = 67/132 (50.76%), Query Frame = 0 

Query: 28  NGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVKAP---KKRAETWVQDETRSLISLRREM 87
           +G  H   HQ Q  ++ H      +  +  E+ +P     R   W  +ET+ LI +R E+
Sbjct: 2   DGHQHHHLHQLQYLNKHHL----HTQSQTPEIASPVAVGDRFPQWSVEETKELIGIRGEL 61

Query: 88  DGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMS 147
           D  F  +K NK LWE IS KMR++ F RSP  C  KW+NL+  FK  +  +  +   +  
Sbjct: 62  DQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNLVTRFKGCETMEAETARQQFP 121

Query: 148 YYKEIEEILKER 157
           +Y +++ I   R
Sbjct: 122 FYDDMQNIFTTR 129

[Close]
BLAST of Carg21858 vs. TAIR10
Match: AT1G76880.1 (Duplicated homeodomain-like superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.8e-12
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 0 

Query: 51  DSSGEDHEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGF 110
           D+ G+ +   A    +  W + E  +LI LR  +D  +  +     LWE+ISA MR  GF
Sbjct: 391 DNGGDQNMTPAASASSSRWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGF 450

Query: 111 DRSPTMCTDKWRNLLKEFKKAKHHD--RGSGSAKMSYYKEIEEILKERSK 159
           +R+   C +KW N+ K FKK K  +  R   S    Y+ +++ + +ER+K
Sbjct: 451 NRNSKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRERNK 500

[Close]
BLAST of Carg21858 vs. Swiss-Prot
Match: sp|Q9FX53|TGT1_ARATH (Trihelix transcription factor GT-1 OS=Arabidopsis thaliana OX=3702 GN=GT-1 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.2e-62
Identity = 121/151 (80.13%), Postives = 134/151 (88.74%), Query Frame = 0 

Query: 50  GDSSGEDHEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERG 109
           G+SSGEDHEVKAPKKRAETWVQDETRSLI  RR MDGLFNTSKSNKHLWEQIS+KMRE+G
Sbjct: 68  GESSGEDHEVKAPKKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKG 127

Query: 110 FDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKST---QY-KSP 169
           FDRSPTMCTDKWRNLLKEFKKAKHHDRG+GSAKMSYYKEIE+IL+ERSK     QY KSP
Sbjct: 128 FDRSPTMCTDKWRNLLKEFKKAKHHDRGNGSAKMSYYKEIEDILRERSKKVTPPQYNKSP 187

Query: 170 -TPP---KIDSYIQFSDKGIEDNGLTFGPVE 193
            TPP   K+DS++QF+DKG +D  ++FG VE
Sbjct: 188 NTPPTSAKVDSFMQFTDKGFDDTSISFGSVE 218

[Close]
BLAST of Carg21858 vs. Swiss-Prot
Match: sp|Q9LU92|TGT4_ARATH (Trihelix transcription factor GT-4 OS=Arabidopsis thaliana OX=3702 GN=GT-4 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.3e-57
Identity = 129/206 (62.62%), Postives = 150/206 (72.82%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRD--MMI-EVASNGDHHIQPHQPQPTHQQHQMMLGDSS-GED 60
           M++SD   P        SRD  MMI +V SNGD  +QP         HQ++LG+SS GED
Sbjct: 1   MFVSDNNNP--------SRDINMMIGDVTSNGD--LQP---------HQIILGESSGGED 60

Query: 61  HE-VKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPT 120
           HE +KAPKKRAETW QDETR+LISLRREMD LFNTSKSNKHLWEQIS KMRE+GFDRSP+
Sbjct: 61  HEIIKAPKKRAETWAQDETRTLISLRREMDNLFNTSKSNKHLWEQISKKMREKGFDRSPS 120

Query: 121 MCTDKWRNLLKEFKKAKHHD---RGSGSAKMSYYKEIEEILKERSKSTQ-YKSP---TP- 180
           MCTDKWRN+LKEFKKAK H+      GS KMSYY EIE+I +ER K    YKSP   TP 
Sbjct: 121 MCTDKWRNILKEFKKAKQHEDKATSGGSTKMSYYNEIEDIFRERKKKVAFYKSPATTTPS 180

Query: 181 -PKIDSYIQFSDKGIEDNGLTFGPVE 193
             K+DS++QF+DKG ED G++F  VE
Sbjct: 181 SAKVDSFMQFTDKGFEDTGISFTSVE 187

[Close]
BLAST of Carg21858 vs. Swiss-Prot
Match: sp|Q9SDW0|TGT3A_ARATH (Trihelix transcription factor GT-3a OS=Arabidopsis thaliana OX=3702 GN=GT-3A PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 0 

Query: 65  RAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNL 124
           R   W  +ET+ L+++R E+D  F  +K NK LWE ++AKM ++GF RS   C  KW+NL
Sbjct: 48  RIPQWSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNL 107

Query: 125 LKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPP 169
           +  +K  +  +  +   +  +Y EI+ I + R +   +   T P
Sbjct: 108 VTRYKACETTEPDAIRQQFPFYNEIQSIFEARMQRMLWSEATEP 151

[Close]
BLAST of Carg21858 vs. Swiss-Prot
Match: sp|O80450|TGT3B_ARATH (Trihelix transcription factor GT-3b OS=Arabidopsis thaliana OX=3702 GN=GT-3B PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-11
Identity = 43/132 (32.58%), Postives = 67/132 (50.76%), Query Frame = 0 

Query: 28  NGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVKAP---KKRAETWVQDETRSLISLRREM 87
           +G  H   HQ Q  ++ H      +  +  E+ +P     R   W  +ET+ LI +R E+
Sbjct: 2   DGHQHHHLHQLQYLNKHHL----HTQSQTPEIASPVAVGDRFPQWSVEETKELIGIRGEL 61

Query: 88  DGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMS 147
           D  F  +K NK LWE IS KMR++ F RSP  C  KW+NL+  FK  +  +  +   +  
Sbjct: 62  DQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWKNLVTRFKGCETMEAETARQQFP 121

Query: 148 YYKEIEEILKER 157
           +Y +++ I   R
Sbjct: 122 FYDDMQNIFTTR 129

[Close]
BLAST of Carg21858 vs. Swiss-Prot
Match: sp|Q84W56|RNJ_ARATH (Ribonuclease J OS=Arabidopsis thaliana OX=3702 GN=RNJ PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-08
Identity = 29/107 (27.10%), Postives = 56/107 (52.34%), Query Frame = 0 

Query: 49  LGDSSGEDHEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRER 108
           L D+S  + +    + R   W  +E + +I +R E+   F   K    LWE+IS+ +   
Sbjct: 801 LADASDSETKSSPKRVRKNKWKPEEIKKVIRMRGELHSRFQVVKGRMALWEEISSNLSAE 860

Query: 109 GFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKE 156
           G +RSP  C   W +L+++++++K  +R   S    +++++  IL E
Sbjct: 861 GINRSPGQCKSLWASLIQKYEESKADERSKTS--WPHFEDMNNILSE 905

[Close]
BLAST of Carg21858 vs. TrEMBL
Match: tr|A0A0A0LKN9|A0A0A0LKN9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350410 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 3.2e-98
Identity = 181/196 (92.35%), Postives = 185/196 (94.39%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQP----QPTHQQHQMMLGDSSGED 60
           MYLSDKPRPIDIYKEEGSRDM+IEVASNGDHHIQPHQP         QHQMMLGDSSGED
Sbjct: 1   MYLSDKPRPIDIYKEEGSRDMLIEVASNGDHHIQPHQPXXXXXXXXXQHQMMLGDSSGED 60

Query: 61  HEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM 120
           HEVKAPKKRAETWVQDETRSLI+LRREMDGLFNTSKSNKHLWEQIS KMRERGFDRSPTM
Sbjct: 61  HEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISTKMRERGFDRSPTM 120

Query: 121 CTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQF 180
           CTDKWRNLLKEFKKAKHHDRGSGSAKMS YKEIEEILKERSKSTQYKSPTPPKIDSY+QF
Sbjct: 121 CTDKWRNLLKEFKKAKHHDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQF 180

Query: 181 SDKGIEDNGLTFGPVE 193
           SDKGIEDNGL+FGPVE
Sbjct: 181 SDKGIEDNGLSFGPVE 196

[Close]
BLAST of Carg21858 vs. TrEMBL
Match: tr|A0A1S3BAC6|A0A1S3BAC6_CUCME (trihelix transcription factor GT-1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487753 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 4.2e-98
Identity = 182/196 (92.86%), Postives = 185/196 (94.39%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQP----QPTHQQHQMMLGDSSGED 60
           MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQP         QHQMMLGDSSGED
Sbjct: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPXXXXXXXXXQHQMMLGDSSGED 60

Query: 61  HEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM 120
           HEVKAPKKRAETWVQDETRSLI+LRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM
Sbjct: 61  HEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM 120

Query: 121 CTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQF 180
           CTDKWRNLLKEFKKAKH DRGSGSAKMS YKEIEEILKERSKSTQYKSPTPPKIDSY+QF
Sbjct: 121 CTDKWRNLLKEFKKAKHQDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQF 180

Query: 181 SDKGIEDNGLTFGPVE 193
           SDKGIEDNGL+FGPVE
Sbjct: 181 SDKGIEDNGLSFGPVE 196

[Close]
BLAST of Carg21858 vs. TrEMBL
Match: tr|A0A1S3BB41|A0A1S3BB41_CUCME (trihelix transcription factor GT-1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487753 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 4.2e-98
Identity = 182/196 (92.86%), Postives = 185/196 (94.39%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQP----QPTHQQHQMMLGDSSGED 60
           MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQP         QHQMMLGDSSGED
Sbjct: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPXXXXXXXXXQHQMMLGDSSGED 60

Query: 61  HEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM 120
           HEVKAPKKRAETWVQDETRSLI+LRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM
Sbjct: 61  HEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM 120

Query: 121 CTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQF 180
           CTDKWRNLLKEFKKAKH DRGSGSAKMS YKEIEEILKERSKSTQYKSPTPPKIDSY+QF
Sbjct: 121 CTDKWRNLLKEFKKAKHQDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQF 180

Query: 181 SDKGIEDNGLTFGPVE 193
           SDKGIEDNGL+FGPVE
Sbjct: 181 SDKGIEDNGLSFGPVE 196

[Close]
BLAST of Carg21858 vs. TrEMBL
Match: tr|A0A1S3BA98|A0A1S3BA98_CUCME (trihelix transcription factor GT-1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103487753 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 8.4e-91
Identity = 171/184 (92.93%), Postives = 173/184 (94.02%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQP----QPTHQQHQMMLGDSSGED 60
           MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQP         QHQMMLGDSSGED
Sbjct: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPXXXXXXXXXQHQMMLGDSSGED 60

Query: 61  HEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM 120
           HEVKAPKKRAETWVQDETRSLI+LRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM
Sbjct: 61  HEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM 120

Query: 121 CTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQF 180
           CTDKWRNLLKEFKKAKH DRGSGSAKMS YKEIEEILKERSKSTQYKSPTPPKIDSY+QF
Sbjct: 121 CTDKWRNLLKEFKKAKHQDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQF 180

[Close]
BLAST of Carg21858 vs. TrEMBL
Match: tr|A0A1S3B9T4|A0A1S3B9T4_CUCME (trihelix transcription factor GT-1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487753 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 4.2e-90
Identity = 170/183 (92.90%), Postives = 172/183 (93.99%), Query Frame = 0 

Query: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQP----QPTHQQHQMMLGDSSGED 60
           MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQP         QHQMMLGDSSGED
Sbjct: 1   MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPXXXXXXXXXQHQMMLGDSSGED 60

Query: 61  HEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM 120
           HEVKAPKKRAETWVQDETRSLI+LRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM
Sbjct: 61  HEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTM 120

Query: 121 CTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQF 180
           CTDKWRNLLKEFKKAKH DRGSGSAKMS YKEIEEILKERSKSTQYKSPTPPKIDSY+QF
Sbjct: 121 CTDKWRNLLKEFKKAKHQDRGSGSAKMSCYKEIEEILKERSKSTQYKSPTPPKIDSYMQF 180

The following BLAST results are available for this feature:
BLAST of Carg21858 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961941.11.7e-10699.48trihelix transcription factor GT-1-like isoform X1 [Cucurbita moschata][more]
XP_022996917.13.7e-10698.96trihelix transcription factor GT-1-like isoform X1 [Cucurbita maxima][more]
XP_023545966.13.5e-10497.92trihelix transcription factor GT-1-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023545965.13.5e-10497.92trihelix transcription factor GT-1-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022951166.15.0e-10396.88trihelix transcription factor GT-1-like [Cucurbita moschata] >XP_023002679.1 tri... [more]
BLAST of Carg21858 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G13450.11.2e-6380.13Homeodomain-like superfamily protein[more]
AT3G25990.13.5e-5862.62Homeodomain-like superfamily protein[more]
AT5G01380.19.0e-1433.65Homeodomain-like superfamily protein[more]
AT2G38250.17.6e-1332.58Homeodomain-like superfamily protein[more]
AT1G76880.13.8e-1232.73Duplicated homeodomain-like superfamily protein[more]
BLAST of Carg21858 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FX53|TGT1_ARATH2.2e-6280.13Trihelix transcription factor GT-1 OS=Arabidopsis thaliana OX=3702 GN=GT-1 PE=1 ... [more]
sp|Q9LU92|TGT4_ARATH6.3e-5762.62Trihelix transcription factor GT-4 OS=Arabidopsis thaliana OX=3702 GN=GT-4 PE=2 ... [more]
sp|Q9SDW0|TGT3A_ARATH1.6e-1233.65Trihelix transcription factor GT-3a OS=Arabidopsis thaliana OX=3702 GN=GT-3A PE=... [more]
sp|O80450|TGT3B_ARATH1.4e-1132.58Trihelix transcription factor GT-3b OS=Arabidopsis thaliana OX=3702 GN=GT-3B PE=... [more]
sp|Q84W56|RNJ_ARATH3.2e-0827.10Ribonuclease J OS=Arabidopsis thaliana OX=3702 GN=RNJ PE=1 SV=1[more]
BLAST of Carg21858 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKN9|A0A0A0LKN9_CUCSA3.2e-9892.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350410 PE=4 SV=1[more]
tr|A0A1S3BAC6|A0A1S3BAC6_CUCME4.2e-9892.86trihelix transcription factor GT-1-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A1S3BB41|A0A1S3BB41_CUCME4.2e-9892.86trihelix transcription factor GT-1-like isoform X2 OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A1S3BA98|A0A1S3BA98_CUCME8.4e-9192.93trihelix transcription factor GT-1-like isoform X4 OS=Cucumis melo OX=3656 GN=LO... [more]
tr|A0A1S3B9T4|A0A1S3B9T4_CUCME4.2e-9092.90trihelix transcription factor GT-1-like isoform X3 OS=Cucumis melo OX=3656 GN=LO... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017877Myb-like_dom
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21858-RACarg21858-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 65..127
e-value: 9.7E-5
score: 31.7
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 69..131
e-value: 3.8E-26
score: 92.8
NoneNo IPR availablePFAMPF13837Myb_DNA-bind_4coord: 68..152
e-value: 3.5E-22
score: 78.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..175
NoneNo IPR availablePANTHERPTHR45169FAMILY NOT NAMEDcoord: 1..192
NoneNo IPR availableCDDcd12203GT1coord: 67..132
e-value: 6.24556E-28
score: 100.432
IPR017877Myb-like domainPROSITEPS50090MYB_LIKEcoord: 61..125
score: 8.641