Carg21723 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21723
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	regulator of nonsense transcripts UPF3 isoform X1
Location	Cucurbita_argyrosperma_scaffold_132 : 434151 .. 444614 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGAGGAAAGATTGAGATAAAGAGAATCGAAAACACAACAAATCGTCAGGTCACCTTCTGCAAGAGAAGAAATGGTCTCTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTACTCCAACAACAGGTTCCCTTCTTTTCTCCCTTCTTTTAAATAATTACATCAAATGGGTCTTCTTCGATTCGTTCAATTTCTAATTTTTGAGTTGGGTTGCTTCCGGTTGTTTAGATCATTTATTCGAACTCGACCCAACCTAGTTAGATTCAAAACCAAGTTGGGTTGGGTTGATCGAGTTTTTTAACACTAGTAACAGCAATCGAAGCATAGCTCAACTGATTAAGACATATTTTGGAGTACAAGAAAGAAGGGGGAATTAGAACGATAGAAGAGAGACCATATCCCTAACAAAACCCCATGTTTGATTGTTGGAATAGAGATATAGAGTTAGGTTTAAGAGGCATGAGACTGTTTAATTTCATTAAAATGGAAAAAAAAACAAAACCCTTCATTCAATTTCAAACTCTATGTTCCCTTGCAGTTCTAGGGCTAAAAATATTTTTAATAACAGAATTTATATTTATTTAATATAATATCATCCAGTTGAGTGATTGGATTTGTAATTTCCTAGAGAAAATTCCTAGGTTTGTGTCTGTTTGTTTTTTATGTTTAAGATTCAGATTTGTCTGTCAGAACCACATATCTACGTTAACAAACCTTAATAATTTCAAAAAAAAAATTTGAATTTGAAGGGTTTAGGGTTTGTGGATGTTGAGAAAACTGACAAAACATGTTTATGCTTTCCCATGCAGCATTGAATTTTATGATTCAAAGCTCTGTTTTTTTTCCTTCTACAAACAATCTCTGTCTCTTACTCCCATGCCCTTTCCTCTTCCCATTTTCATGTCAAAAAGTTTAAGCTTCTGCCATGGAGATTTGTAGGGTTTGCTATCACAATAATGAACCCTACCAAAACACTACCCATTATACTACCACTTGCATCTTTCTTCGTATCAAACCATCGTAGAAATATGAAGAGATTCGTTACGTTATCGGTCATTCTTTTCTCTTTTAGGTAAAGGTGTACACGAGTTGAATTGGGTTGAGTTAGAAAAATCTTGGACCAACCTGAAATTTCGACTTATTTGGGTTGGTAACCGAAGCAACCTAAATAGAGTTCACACCTCAATTCAACGAGATTTTCACGTTCGGTTAAATCAAGTTGTCGGGTTATTATATTTTTATTAAAAATTATTTATAAGAATCCTATTTATCCACACAATAATAACTAAAATTTCATAAAATTCAAATATCAAACACTTACCGTTCACAATTTATAAGTAACCTCTCTTATAAATGTTAAATATTCTTATTGTTTTTAAAAGTAGAATTGGGTTGAAATATTGTTTCGGGTTAGTCGAGTTGACCCAAACAAAAAAGTATGAACCTATAAACCGACCCGAATATTTTATTTTCCAAAAATTCAACCCAACCCAATCGAACCAATGGTTTGGTTTGAGTTGAATAGTTTAGATTGGTCAAATTATCGAGTTGTATGAACATTCCTAATACTTTTATGGGTCGTGAATTTTGACAAATTAACATTTATTGATTATGGTGAATATTTACCTGAAATAAGAGCATTTAGAACACAACTCCAAAGAATTAAGGTGAATATTTATTGATTGTTGGATTAAAAAAGTGTGTTATTAGGTATGAACTGTTTTGCATGCAGAATAATAAGTAATGGTACTATCAGTTCTGTAATTTCATCATTTTCATGGCAAAAGCTCAGTAACATATGTTTGGCAATAACTGGAAGTGATTTTGCAGCTGAGTTTACCATGAACACAAGTTTATCACAAGAACAAACTAATTGATTACTAATTTGTATGAACTGTTTGCATGCAGTATCAAAACTACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCCACCAGCTCTGTCACTGAACTAAATACTCAAGTCAGCTCCATTTCTTTTCCTTATCAAATACCTTATTCATTCCATACATTATAAATTATAAGTTATTAATTTTTTGGAGTGTCACAAATCATAAAACATTCATTCATTAAGGCTAACGTATTATATGATATGATATGATATGAACCAAAAAAAAAAAAAAAAAAAAATGAAGTATTATCAGCAAGAATCGGCAAAGCTGCGCCAACAAATCCAAATGCTTCAGAATTCCAACAGGTTATTATTATATGTGATTCTTATGAGTATCATATTCATATTATATACACATTGATTTGATTCATTATTGGGCTAAATATATGATTTTTCTGTTCAATATTTGTTTCATTGTTTCAATTTGATCCCTAATTGGGGAGAAAATTGGAAAAAAAAACTGAGAGAATATTGAAAGAGAATGATATATATTTAGCCAAAAGGATGATATCTAAGCTGGCTTGAATATGCTACTCTCATTGGTTGAAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTGAAAGAACTGAAGCAGCTGGAGAATAGGCTCGAAAGAGGCATCACTAGGATCAGATCAAAGAAGGTCAGCTTTCTTTTTTCCATCTAAAACCTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTTTTGAAATCATTAATTATGTGTTTGTTTCTTTGATGAACAGCATGAAATGTTGCTAGCTGAAATTGAGTACCTGCAGAAACGGGTACTCTCCATTCTTTTTCCTCATATTCTTATCATTTTTTTTAACTCGATCAACTTCATTCTATAGGAGATCGAACTCGAGAACGAAAATGTGTGTATTAGAACCAAGGTACGTACGTTGTTATACGTTGATAAGGTTGTACATGGATTGAATTGGATTGAGAAAATCTTTTGAAATTTTGGGTTGGTTGAATTGGACACCCGTGTAACTCGAATGGAGTTCATAACCCAACATAACCATATATTCTCGAGTTGGGTTCTTTTTATTTTTAAAAAAATTTACTTATTTACGCTACATGATACATTAATAACTAAAATTTCATAAAAATTTCGAATTTCAAAGATTCACAACTCACCACTTATCACGTAGGATTGGGTTAGGTTGGATTGAATGTTAACCTGTGCACCGACTTGAATGTTTTCGGATTTTCAAAAATTCAACTCAACCCAGACTGAACAAAATCTAACACAACCTTAATTGGGCCGATTAGTTCAAGTTGATCGGACACTCAGGTCATTTAAACACTTTTTTAACTCAGATTTATGATAGGAAAATTTTGGGTTTTGTTTGTTGTAGATAGCAGAGGTGGAGAGGCTTCATCAAGCAAACATGGAGTCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCTAATATCATGGAAGGTGGAGCTGTCACTTTCTCTCACCAAGACTAGAGCTACTTGCTTCATCTCAGGTAGAAATCAATGGTTTTTTTGGTCATGATTTAATCTCTGAACTTAACTTATTAATCCCATCATATTGTTTGATGCAGAGATGATGATGATATGATGATGATATGATGATGATAGGATGATTTCCCCATGTTTTGGAGACTGTAATGATGGGACAGATGTTTGTATTAATTAAGGTTTACAAAATATTGAGGTTACAAGAAAGGATTATAATAAAATATGCCCATCATTTTGTGATGATTTTATTTTAATTAATTTTAGTAATCATTCATGATCATGATGATCATGTTTGTGATGTGATTTGCAGCTTATGTGTTTTGAATTATATTAATATTACACATATCATTAATATTCTATATATTATCTTCTTTGCTCGATGGATATTAAAGAACGGTTATCTAGGGTTGCATTTCTCGATATTTATTCTATTGATTTCGCATATTGAACCCTTGTCTATCGTACTTGAATTAATTAGCTTTTTGTTTCAAGGATCGTAGCTCGTGCATGAATTAGTTAGAGCTTGAATGATTATGACCCAGAAATCGAGTTAATAAGGAGTTGTTCATGCTTATTTTATTTTTTATTTTTTATTTTTTTTAGGCACGCTAAATGTATTCGAGAAGGTTATTTAGTGATATTAGAACTATTTTAGATATTATCAATTATTGCTATGGATATTAATTTTGGATTAATATTAATATGGGATGAAATTTAGGGTTGAATGAAAATTTAATTGGAAAAATAAAAGTTTTAGATGAAGGGTAAATTTGGAAAAGGGAAATTAAAGCCCTAATGCACGTTTTTCCCCATTTGGGTTCTTCTCCTTCTCCGACCAATGAAGTCTTGCAGTGTACACGTATTTCTAGCCAGCAAACCAAGTGTAGCTAGTACAGAGGAAGCAGGAACCATAATTCTTTGACATAGAAGAACTTTCTATCTCGACGACATCTCAATCGGTGGCGTTAGAACTTACAATAGCGACGGTGGCAGCATCAATGTATAACAACAATGGTGACAATCTTTCTCTGGACCGACGATCTCTTCTCTAATTCGATGAACACAATTAAAAAAAAAAAAAAAATTGGCTCATTTTTTTCAAATTATTTAGTTTTTAATAATAATTCATACCTATTAGAATTTCCATTTAAAAGAATTAAAATATTCCAGTGAAAATAGGGGCTTGGTATTATGGGCCAGAAAGAGTCCAATGGGCCGAGTTCCGGGAAGCCCAAAGAGTGTGTCGTGGTTTAGAAACCGGCAACATTCCCCAGAAAAGAAAAAAGAAAAAAAGAAAAAAAGAAATATATTTCTCCGTCTTTTGCTAAAAATTGTTGAGAAATTTAGAAACAAAAACCAAAGGGTAAAAGGCAGAAAGGAATTTGTGAATTGCTCTTCTTCCCATTGCGGGGGTTTTTCAGATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTCCCTCACTCGGATCTCTTCCACCATATTCATGATCGCTTCGCCGGTCGCTACAATTCCTGTTACTATCGTCCCGGAAAGACCAGGTTCCACTTTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTCTAATTTCCTTCTAATTTCATCTTTCCCGCACATAAATTAGTATTACCAACTGGGTTTTCAGTTTCCACAAATCTGGAGCTTCACTTAGCCTAACCGCGTACTGGGTATTTCTCTTTCTCCTTTTTCCCCCTTCCTCCTTTCTGGGGTTGGGGGGTTTCTCTCATTACAATCATGTTCACCACTTCTTTCTCCTTCCTCCAATTTGGGTTTTCCTCATTACCAATGCCCCTTACTTACTATACTTCCTGCTTTTTCTTCTCTTTTGTCTTGGATTCTCTGGACTAAGCCTCACAATACTGAAACTTTTTTACTCATTCAGAGGTTTCTTCTGAAATAATTTTGCAGTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATCGATTTTACCATACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTAAAGATGACACCTTTTTTTGTAGCTCAATTCTTTTCTGATAAGTGGTAGATAACAATTTTATGCTTAATGCTGATTGATGATATATGTAGAGATTACATTACCCCTTTTAAAGCTTAGTTTTTAATTGACTGCATACCAGTTTAGCTTATTTCAGTTAAATGGTTACAGGTGCTCAGTATAAGGCTGTAGTTGAATATGCTCCTTCACAGCGTGTTCCGAGGTCGTCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGGTAAGCATCGGTTAGTGAGAAGATGGAATAAGTGGTTGTTCTTGTTTTATATTGCATATTGTGTTATGTGAACTATCTTTTCTTGATGAAAGCAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTACCGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTTTGTTATTATGTTCATGGACGACTTGTTGACGTTTGTTGCATTTGTTAAATCTTATGTGGAACGAGGCCAAATAAGTTATATAATGTAAAATAGGGTGCCAAAAAGTTGCTGAGTAGTCATTCTGTAACTTCGCTATGAACTTTTGTTTTGCTACTCGGTTCATAACCTCGAGGTGGTGTGGCATGAGATACTACTCGGTTCAAATTCGGATAGTCTAGAAGTTTTATATGCCTACTTTTGTTTTGCAGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGGTGATATTCTTAACACATCGACCTGTGTGCTATATCTTAAAATTTCAGAGAAAATGAAACTACTTGTTTACAAAAATGAAGGTCACAAGGTATTGGTTCTGTCTGACCCACCCATATTAATATTTATACATTCACTTACCATTAAGTTGACATTTCTTCGTTTGAATTTGTCTGCTGCTTGTGTAACGATTTCAGCTTCTTTTCCTTTCTTATGAGTTAACGACATGCATGCTATTAATTCCGATGCTCTTAGGATGGTTGTCTATGTGGTCTTGAATATTTTTATTCATAATACATCAATTTCTCACTATCTCATGTAAGTTTTTTCATTCAATAGGGTTCTTCAGTGCCTCGGAAGGTTAAAAGAGGTGTTGCAGCATCCTCTAGAAAACATGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTCCTACTTTTCCAATGTTTTGTTTTTCCTAAGGTTTTTAGAGTTCGTAAATGTTAGTTTCTTAGGGGAAGTATGCTGTCTTGTCTTGTCGTAGATCTCAGAAACGAATGAAGAATAAGACCTAAAGGATGATTATAAAAATCCTTAAAGAGAGGCATTCGACCTAGTGAAGGATCCAACGAGTCCCAAGAACTCTCGAAACCTTTTAAGATTCTCTTGTTACTCTCTAGCCATATTCCGTTAAGCGGCAAGAAACTAGTGAAATATTTTATGACCTCGATCTAACCACAATCTTTATGACAAACCAAGAAAACTCCTAAGGCCTCAAAAAAAGTTGTAAATCAAGGTATCAAAAGGATATGATCTAGTTCCTCGAACACTCGTGATTTTAACCATTTTAGAATTACTTCCAAACATGCCCTAAAAATGCATTGGTGGTATGGCCTCAACACAAAGGAACATGGCCTCTGTATTTAGTCTATGGTGTTAACTCCCTAATGCAAGTTCTGCCACTCTCAAAACTTGATCTTCTATGAAATTCTTACCTTCTACAATGAGGTGAAGCAGAAAATAATTAATACAGAGCCTAAAGTTTCGACTCTACCGAACTCAACCTAAAGTTTCTAATGTTATTGGTGGGATAGTATTTATATGATTTAAGTTTTGTCTAACTGGGATTGAAACTGTCTCATGCCACACCACCTCGAGGTTATGAACAGTGAGCGCTAAAATTGAGCCTTTAGGTTAGCCCCCTTAAATTTCATGCTTTTACTGTGGTGATCCTTTCTTGTGAATAATTTTATAGTCTTATCTTTTTGGTCTGAAGATTTTAGTTATATTTTCTTTTATACATGCAGTATATTTTGAAGGACAGTGGGAAGAACACGAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGGTTAGATTTCTTTGTGATCAGCAACATTATTTAAGTTGCCACTTTTCTTATCCTTCTCAGTTACTGGTCCATTGATTGTTAGACTGTTGAAAATGAGTCTAATTTATGTTATCTCAGCGATTCTATGCTTCAAGTCATTAGGAGCAGGGGAACATTAGCCTATATGGTTTAAGATCTGAACACTTGTTATTCCACTGCCTATAATGGGGCGAGCTCTCATAACTATTTTACGTTTTTCGCATTGCTAATTACCCTGAGCCCAGTAGTAATGTTCTTGAAAATGTCTTTCCCCCACCCCCTTGATTAGTAATTATCTTGTTTATTTCTTGGACTTTGTCATATTGTGATGTGCAGATCACAAACTTGCATGTTAACATATACATTATTAGCTATGCAGCACATATCCATTGTTGTATTATATTATGTCCATCAGGAAAAGAGGGAGAAAACAATGTCCTCCATTAGATAATGCATTCTCCTGCATATCAATATGTTCTACATATTTATAACGAATTCGTCGTCTAGATTTGAAGGCTCTGTTTCATATGTCTATGTAACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGGCGAGACGTATCTCATGTATGTTTCTTAAGTTCTCTTATGTTATTACATCTTTTGTTGATCTCTTTCTCTTTAGATATTAACTTCTGTGAATGATCTCAATTCTCACTCTAGTCTAACGTTGGGAGGGTACAAATTCTGTTCTTTTGCCTCATATTTTGACACTTACCTTATCTAGTTCATGCATAATGATACCTTTACAGATTGCTGATGGCATGTTACAGTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGGTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAAAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGGTACTATTACTATTATAACCCATTGGGGATGACGAGACTACTTGCTTGTGTATTATACTGGACGATGATCGAAGTATGTGTTCCAGATATGAAATTATAACTCTAATTGTCTTTAATGCCTTTACAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGGTTATACTTTCTCACAAACCTTCTTTACATTGTCCATCATTTATTTTAGGAGATATCCAAAGGTACTCACCTTCTGTGCTTCTCTAGGTTTGGTTAGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGAAGGATGATGGATCTTTGAACCCAAATGAAGGAAAACCATCCAAAAGAGGTGTTGCAGGTGGCCATGAGGTTTGCTTCTGCATCTAAGCTAAATGACTAACTCTCATGCTACACAGTCACTTCTTTTTCAGAAACTCATTTGCTTTGATGCATATATGCAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAACATATTTAAAACATGTGAGTCCTTTTAATTATTAGCAAAACATTTGATCTCCTTTAAGATTAAAACAAAGATTATGACATGGTTCTCCATTGGACGATGACGATGTGTGTAATCTGTCGAACAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTGTCTCCATTTCTGAGGATTAAAAAATGCACATCCTCAGAAGGCATTCACCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGCAAGATTTGCAATTGTTTTGTCGTATACAGGTGGTAACAAAACAAACACAAAGTTCTCTGGTTGAAGATCGAATATGCATGCGTTCTTAGAATTTTTGGTTTTACGAAATCAAAGTTTCATTGGTTGGTTGAAGACCAAATATGGTTGTGGATTTTGGTTTGGTATGATCTGATTTTTTGCCCAACATACCAAGTGTGATTGCTTCACCTGGACGAACGTGTCGGTGTCGGTATATACACATACGTGGTTTGAGTGACAGGATATCAAAGCCAAGAGGGAGGTTCCTTCCAACTTTCCCGTTGCTTCATGTTTTGGTCATATCCCAAGTTTTCTTTCCCATAGAAGAAGCTGAATGTAGAAAGTACCTAGTAGTACTGTACTTGCCATAATCTCACAAGGGGTGTTTGGTTTGGTACACATTTGTTCTTCGATTCCATGCGTGGGGCAGTGAATCAGAAACATCGAACTTATACTCTTTCATGTCGTAGATGAGCATTGTGATGGATGATTATGATATATGTGTTTCTGTCGACTAATATGT

mRNA sequence

ATGGGTAGAGGAAAGATTGAGATAAAGAGAATCGAAAACACAACAAATCGTCAGGTCACCTTCTGCAAGAGAAGAAATGGTCTCTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTACTCCAACAACAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTGAAAGAACTGAAGCAGCTGGAGAATAGGCTCGAAAGAGGCATCACTAGGATCAGATCAAAGAAGCATGAAATGTTGCTAGCTGAAATTGAGTACCTGCAGAAACGGGAGATCGAACTCGAGAACGAAAATGTGTGTATTAGAACCAAGATAGCAGAGGTGGAGAGGCTTCATCAAGCAAACATGGAGTCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCTAATATCATGGAAGGTGGAGCTATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTCCCTCACTCGGATCTCTTCCACCATATTCATGATCGCTTCGCCGGTCGCTACAATTCCTGTTACTATCGTCCCGGAAAGACCAGTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATCGATTTTACCATACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCTCCTTCACAGCGTGTTCCGAGGTCGTCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTACCGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGTATATTTTGAAGGACAGTGGGAAGAACACGAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGGCGAGACGTATCTCATATTGCTGATGGCATGTTACAGTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGGTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAAAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGGTTTGGTTAGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGAAGGATGATGGATCTTTGAACCCAAATGAAGGAAAACCATCCAAAAGAGGTGTTGCAGGTGGCCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTGTCTCCATTTCTGAGGATTAAAAAATGCACATCCTCAGAAGGCATTCACCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGCAAGATTTGCAATTGTTTTGTCGTATACAGGTGGTAACAAAACAAACACAAAGTTCTCTGGTTGAAGATCGAATATGCATGCGTTCTTAGAATTTTTGGTTTTACGAAATCAAAGTTTCATTGGTTGGTTGAAGACCAAATATGGTTGTGGATTTTGGTTTGGTATGATCTGATTTTTTGCCCAACATACCAAGTGTGATTGCTTCACCTGGACGAACGTGTCGGTGTCGGTATATACACATACGTGGTTTGAGTGACAGGATATCAAAGCCAAGAGGGAGGTTCCTTCCAACTTTCCCGTTGCTTCATGTTTTGGTCATATCCCAAGTTTTCTTTCCCATAGAAGAAGCTGAATGTAGAAAGTACCTAGTAGTACTGTACTTGCCATAATCTCACAAGGGGTGTTTGGTTTGGTACACATTTGTTCTTCGATTCCATGCGTGGGGCAGTGAATCAGAAACATCGAACTTATACTCTTTCATGTCGTAGATGAGCATTGTGATGGATGATTATGATATATGTGTTTCTGTCGACTAATATGT

Coding sequence (CDS)

ATGGGTAGAGGAAAGATTGAGATAAAGAGAATCGAAAACACAACAAATCGTCAGGTCACCTTCTGCAAGAGAAGAAATGGTCTCTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTACTCCAACAACAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTGAAAGAACTGAAGCAGCTGGAGAATAGGCTCGAAAGAGGCATCACTAGGATCAGATCAAAGAAGCATGAAATGTTGCTAGCTGAAATTGAGTACCTGCAGAAACGGGAGATCGAACTCGAGAACGAAAATGTGTGTATTAGAACCAAGATAGCAGAGGTGGAGAGGCTTCATCAAGCAAACATGGAGTCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCTAATATCATGGAAGGTGGAGCTATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTCCCTCACTCGGATCTCTTCCACCATATTCATGATCGCTTCGCCGGTCGCTACAATTCCTGTTACTATCGTCCCGGAAAGACCAGTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATCGATTTTACCATACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCTCCTTCACAGCGTGTTCCGAGGTCGTCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTACCGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGTATATTTTGAAGGACAGTGGGAAGAACACGAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGGCGAGACGTATCTCATATTGCTGATGGCATGTTACAGTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGGTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAAAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGGTTTGGTTAGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGAAGGATGATGGATCTTTGAACCCAAATGAAGGAAAACCATCCAAAAGAGGTGTTGCAGGTGGCCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTGTCTCCATTTCTGAGGATTAAAAAATGCACATCCTCAGAAGGCATTCACCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGCAAGATTTGCAATTGTTTTGTCGTATACAGGTGGTAA

Protein sequence

MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLHQANMESGQELNAIQALASRNFFSPNIMEGGAMKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDFTIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLEFLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQYILKDSGKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSDNGIQTGLWFLKLPGGLSPFLRIKKCTSSEGIHHVKWRYALEAVGNSNRFRELDCKICNCFVVYRW

Homology

[Close]

BLAST of Carg21723 vs. NCBI nr
Match: XP_022948756.1 (regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 907.5 bits (2344), Expect = 2.8e-260
Identity = 475/511 (92.95%), Postives = 476/511 (93.15%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ      
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 346 --------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 405
                                     YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 406 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 465
           GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 300

Query: 466 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 525
           MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS
Sbjct: 301 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 360

Query: 526 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 585
           EGDGKR MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV
Sbjct: 361 EGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 420

Query: 586 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKD 645
           SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENG VRHVGRRGAVHIMKD
Sbjct: 421 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKD 480

[Close]

BLAST of Carg21723 vs. NCBI nr
Match: XP_023523934.1 (regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 905.6 bits (2339), Expect = 1.1e-259
Identity = 475/511 (92.95%), Postives = 475/511 (92.95%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ      
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 346 --------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 405
                                     YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 406 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 465
           GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 300

Query: 466 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 525
           MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGS
Sbjct: 301 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGS 360

Query: 526 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 585
           EGDGKR MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV
Sbjct: 361 EGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 420

Query: 586 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKD 645
           SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENG VRHVGRRGAVHIMKD
Sbjct: 421 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKD 480

[Close]

BLAST of Carg21723 vs. NCBI nr
Match: XP_022973412.1 (regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 904.4 bits (2336), Expect = 2.4e-259
Identity = 474/511 (92.76%), Postives = 475/511 (92.95%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYN CY+RPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNWCYFRPGKTSQKEQRYARAYIDF 60

Query: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ      
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 346 --------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 405
                                     YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 406 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 465
           GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 300

Query: 466 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 525
           MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS
Sbjct: 301 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 360

Query: 526 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 585
           EGDGKR MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV
Sbjct: 361 EGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 420

Query: 586 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKD 645
           SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENG VRHVGRRGAVHIMKD
Sbjct: 421 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKD 480

[Close]

BLAST of Carg21723 vs. NCBI nr
Match: XP_022948757.1 (regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 887.1 bits (2291), Expect = 3.9e-254
Identity = 468/511 (91.59%), Postives = 469/511 (91.78%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ      
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 346 --------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 405
                                     YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 406 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 465
           GISDVGTADSGKKKILLLKGKGRDVSH       FQSATSSGNSPANATKQNQRREAGGS
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSH-------FQSATSSGNSPANATKQNQRREAGGS 300

Query: 466 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 525
           MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS
Sbjct: 301 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 360

Query: 526 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 585
           EGDGKR MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV
Sbjct: 361 EGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 420

Query: 586 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKD 645
           SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENG VRHVGRRGAVHIMKD
Sbjct: 421 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKD 480

[Close]

BLAST of Carg21723 vs. NCBI nr
Match: XP_023523936.1 (regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 885.2 bits (2286), Expect = 1.5e-253
Identity = 468/511 (91.59%), Postives = 468/511 (91.59%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 60

Query: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285
           TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345
           FLKLIAKP EHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ      
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 346 --------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 405
                                     YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKKYILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 240

Query: 406 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 465
           GISDVGTADSGKKKILLLKGKGRDVSH       FQSATSSGNSPANATKQNQRREAGGS
Sbjct: 241 GISDVGTADSGKKKILLLKGKGRDVSH-------FQSATSSGNSPANATKQNQRREAGGS 300

Query: 466 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 525
           MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPR INSRSGSNDMSSNDPNPSGS
Sbjct: 301 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRSINSRSGSNDMSSNDPNPSGS 360

Query: 526 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 585
           EGDGKR MENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV
Sbjct: 361 EGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 420

Query: 586 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKD 645
           SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENG VRHVGRRGAVHIMKD
Sbjct: 421 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVGRRGAVHIMKD 480

[Close]

BLAST of Carg21723 vs. TAIR10
Match: AT1G33980.2 (Smg-4/UPF3 family protein)

HSP 1 Score: 359.4 bits (921), Expect = 5.2e-99
Identity = 233/533 (43.71%), Postives = 303/533 (56.85%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKT--SQKEQRYARAYI 225
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA RYN   +RPGK+    K Q+Y+RAY+
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60

Query: 226 DFTIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDY 285
            F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDY
Sbjct: 61  SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120

Query: 286 LEFLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ---- 345
           LEFLK+IA+P E+LPSAEIQLER+EAEQSG +K  PIVTPLMEF+RQKRA   G Q    
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSD 180

Query: 346 -----------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATS 405
                                        Y+ K+S KN  R+  ++ +   + + + + S
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTAD-VSSSKPDYRQSNS 240

Query: 406 SG-----------IGISDVG---TADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGN 465
           SG           I  S  G   T DSGKKKILLL+ K RD         +    T+   
Sbjct: 241 SGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLSR 300

Query: 466 SPANATKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINS 525
           +  + ++QNQ+ + GG +I+ ILL ND+R  QSS+  QS Q+++   ++N KRP RP N+
Sbjct: 301 NSTD-SRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANT 360

Query: 526 RSGSNDMSSNDPNPSGSEGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWA 585
           R+G                            K++H  G  SEKQE+R RNKDRPDR +WA
Sbjct: 361 RAG----------------------------KDYHTSGTISEKQERRTRNKDRPDRVMWA 420

Query: 586 PR--GRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSV 645
           PR  G  D  +S    +                 GE+KD +   R+G+V  +  G   ++
Sbjct: 421 PRRDGSEDQPLSSAGNN-----------------GEVKDRMFSQRSGEVVNSSGGH--TL 480

[Close]

BLAST of Carg21723 vs. TAIR10
Match: AT4G09960.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-58
Identity = 131/222 (59.01%), Postives = 152/222 (68.47%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEY+NN
Sbjct: 27  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 86

Query: 61  S--------------------------------------------NLVRHLMGDSLSALT 120
           +                                            N  R+LMGDSLS+L+
Sbjct: 87  NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 146

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERL--H 170
           VKELKQ+ENRLE+ I+RIRSKKHE+LL EIE  QKREIEL+NEN+ +RTK+AEVER   H
Sbjct: 147 VKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQH 206

[Close]

BLAST of Carg21723 vs. TAIR10
Match: AT2G42830.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 187.6 bits (475), Expect = 2.7e-47
Identity = 111/217 (51.15%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           +GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEY+NN
Sbjct: 16  IGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75

Query: 61  S--------------------------------------------NLVRHLMGDSLSALT 120
           S                                            NL RH++G+SL +L 
Sbjct: 76  SVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLN 135

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKR--EIELENENVCIRTKIAEVERLH 163
            KELK LE+RLE+GI+R+RSKKHEML+AEIEY+QKR  EIEL+N+N+ +R+KI E   L 
Sbjct: 136 FKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKRVKEIELQNDNMYLRSKITERTGLQ 195

[Close]

BLAST of Carg21723 vs. TAIR10
Match: AT4G18960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 177.9 bits (450), Expect = 2.1e-44
Identity = 101/175 (57.71%), Postives = 117/175 (66.86%), Query Frame = 0


Query: 2   GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS 61
           GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS
Sbjct: 18  GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS 77

Query: 62  --------------------------------------------NLVRHLMGDSLSALTV 121
                                                       N  R LMG+++ +++ 
Sbjct: 78  VKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSP 137

Query: 122 KELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVER 133
           KEL+ LE RLER ITRIRSKK+E+L +EI+Y+QKRE++L N+N  +R KIAE ER
Sbjct: 138 KELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENER 192

[Close]

BLAST of Carg21723 vs. TAIR10
Match: AT3G58780.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 173.3 bits (438), Expect = 5.3e-43
Identity = 102/209 (48.80%), Postives = 124/209 (59.33%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           +GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEY+NN
Sbjct: 16  LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75

Query: 61  S----------------------------------------------------------- 120
           S                                                           
Sbjct: 76  SXXXXXXXXXXXXXXXXXLWIYSSHVVRGTIERYKKACSDAVNPPSVTEANTQYYQQEAS 135

Query: 121 ----------NLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQK 141
                     N  RH++G+SL +L  KELK LE RLE+GI+R+RSKK+E+L+AEIEY+QK
Sbjct: 136 KLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQK 195

[Close]

BLAST of Carg21723 vs. Swiss-Prot
Match: sp|Q9FVW4|RENT3_ARATH (Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 PE=1 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.0e-99
Identity = 234/531 (44.07%), Postives = 304/531 (57.25%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA RYN   +RPGK+S K Q+Y+RAY+ F
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60

Query: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285
             PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDYLE
Sbjct: 61  KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120

Query: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345
           FLK+IA+P E+LPSAEIQLER+EAEQSG +K  PIVTPLMEF+RQKRA   G Q      
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180

Query: 346 ---------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSG 405
                                      Y+ K+S KN  R+  ++ +   + + + + SSG
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPRKTTAD-VSSSKPDYRQSNSSG 240

Query: 406 -----------IGISDVG---TADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSP 465
                      I  S  G   T DSGKKKILLL+ K RD         +    T+   + 
Sbjct: 241 KELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTNLSRNS 300

Query: 466 ANATKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRS 525
            + ++QNQ+ + GG +I+ ILL ND+R  QSS+  QS Q+++   ++N KRP RP N+R+
Sbjct: 301 TD-SRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANTRA 360

Query: 526 GSNDMSSNDPNPSGSEGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPR 585
           G                            K++H  G  SEKQE+R RNKDRPDR +WAPR
Sbjct: 361 G----------------------------KDYHTSGTISEKQERRTRNKDRPDRVMWAPR 420

Query: 586 --GRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVEN 645
             G  D  +S    +                 GE+KD +   R+G+V  +  G   ++EN
Sbjct: 421 RDGSEDQPLSSAGNN-----------------GEVKDRMFSQRSGEVVNSSGGH--TLEN 480

[Close]

BLAST of Carg21723 vs. Swiss-Prot
Match: sp|Q38836|AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 2.1e-57
Identity = 131/222 (59.01%), Postives = 152/222 (68.47%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEY+NN
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61  S--------------------------------------------NLVRHLMGDSLSALT 120
           +                                            N  R+LMGDSLS+L+
Sbjct: 61  NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 120

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERL--H 170
           VKELKQ+ENRLE+ I+RIRSKKHE+LL EIE  QKREIEL+NEN+ +RTK+AEVER   H
Sbjct: 121 VKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQH 180

[Close]

BLAST of Carg21723 vs. Swiss-Prot
Match: sp|P29385|AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana OX=3702 GN=AGL5 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.5e-47
Identity = 111/215 (51.63%), Postives = 137/215 (63.72%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           +GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEY+NN
Sbjct: 16  IGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75

Query: 61  S--------------------------------------------NLVRHLMGDSLSALT 120
           S                                            NL RH++G+SL +L 
Sbjct: 76  SVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLN 135

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLHQA 163
            KELK LE+RLE+GI+R+RSKKHEML+AEIEY+QKREIEL+N+N+ +R+KI E   L Q 
Sbjct: 136 FKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQ 195

[Close]

BLAST of Carg21723 vs. Swiss-Prot
Match: sp|P29381|AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana OX=3702 GN=AGL1 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-44
Identity = 102/184 (55.43%), Postives = 124/184 (67.39%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           +GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEY+NN
Sbjct: 16  LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANN 75

Query: 61  S--------------------------------------------NLVRHLMGDSLSALT 120
           S                                            N  RH++G+SL +L 
Sbjct: 76  SVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLN 135

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLHQA 141
            KELK LE RLE+GI+R+RSKK+E+L+AEIEY+QKRE+EL++ N+ +R KIAE  RL+  
Sbjct: 136 FKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPD 195

[Close]

BLAST of Carg21723 vs. Swiss-Prot
Match: sp|Q40885|AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida OX=4102 GN=AG1 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.0e-44
Identity = 105/207 (50.72%), Postives = 131/207 (63.29%), Query Frame = 0


Query: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 60
           +GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NN
Sbjct: 17  LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76

Query: 61  S--------------------------------------------NLVRHLMGDSLSALT 120
           S                                            N  R+ +G+SL+AL 
Sbjct: 77  SVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALN 136

Query: 121 VKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLHQA 160
           +++L+ LE ++E+GI++IR+KK+E+L AEIEY+QKREI+L N N  +R KIAE ER  Q 
Sbjct: 137 LRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQM 196

[Close]

BLAST of Carg21723 vs. TrEMBL
Match: tr|A0A1S3CB69|A0A1S3CB69_CUCME (regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498712 PE=4 SV=1)

HSP 1 Score: 823.9 bits (2127), Expect = 2.7e-235
Identity = 431/511 (84.34%), Postives = 455/511 (89.04%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGR+N  YYRPGKTSQK+QRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285
           T PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS+KKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345
           FLKLIAKP EHLPSAEIQLERKEAEQSG AK+TPIVTPLMEFVRQKRAVESGTQ      
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 346 --------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 405
                                     YILKDS KNTNRRDKSNFILVPRR+DQSA SSGI
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRRDDQSANSSGI 240

Query: 406 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 465
           GISDVG AD GKKKILLLKGK RD+SH++D MLQ QSATSSGNSPA+A+K N RREAGGS
Sbjct: 241 GISDVGAADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGS 300

Query: 466 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 525
           +IRSILLNN+ARHGQSSSVAQSHQKIQILNSDNGKRPPRP N+RSGSND+SSN+PNPSGS
Sbjct: 301 VIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGS 360

Query: 526 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 585
           EGDGKR  +NKF+KKE HGLG+ASEKQEKRIRNKDRPDRGVWAPR RSDASVSQL+ESSV
Sbjct: 361 EGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 420

Query: 586 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKD 645
           SQS+HLLSDSVEAYRGEMK+D+HGSRT DVTT VSGR+SSVENG VRHVGRRGA H+MKD
Sbjct: 421 SQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSVRHVGRRGAGHVMKD 480

[Close]

BLAST of Carg21723 vs. TrEMBL
Match: tr|A0A1S3CBX5|A0A1S3CBX5_CUCME (regulator of nonsense transcripts UPF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498712 PE=4 SV=1)

HSP 1 Score: 808.5 bits (2087), Expect = 1.2e-230
Identity = 427/511 (83.56%), Postives = 450/511 (88.06%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGR+N  YYRPGKTSQK+QRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285
           T PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS+KKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345
           FLKLIAKP EHLPSAEIQLERKEAEQSG AK+TPIVTPLMEFVRQKRAVESGTQ      
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 346 --------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 405
                                     YILKDS KNTNRRDKSNFILVPRR+DQSA SSGI
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRRDDQSANSSGI 240

Query: 406 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 465
           GISDVG AD GKKKILLLKGK RD+SH+       QSATSSGNSPA+A+K N RREAGGS
Sbjct: 241 GISDVGAADFGKKKILLLKGKERDISHL-------QSATSSGNSPASASKHNHRREAGGS 300

Query: 466 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 525
           +IRSILLNN+ARHGQSSSVAQSHQKIQILNSDNGKRPPRP N+RSGSND+SSN+PNPSGS
Sbjct: 301 VIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGS 360

Query: 526 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 585
           EGDGKR  +NKF+KKE HGLG+ASEKQEKRIRNKDRPDRGVWAPR RSDASVSQL+ESSV
Sbjct: 361 EGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 420

Query: 586 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKD 645
           SQS+HLLSDSVEAYRGEMK+D+HGSRT DVTT VSGR+SSVENG VRHVGRRGA H+MKD
Sbjct: 421 SQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSVRHVGRRGAGHVMKD 480

[Close]

BLAST of Carg21723 vs. TrEMBL
Match: tr|A0A0A0KSY5|A0A0A0KSY5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 PE=4 SV=1)

HSP 1 Score: 797.7 bits (2059), Expect = 2.1e-227
Identity = 421/511 (82.39%), Postives = 442/511 (86.50%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGR+N  YYRPGKTSQK+QRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285
           T PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS+KKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345
           FLKLIAKP EHLPSAEIQLERKEAEQSG AK+TPIVTPLMEFVRQKRAVESGTQ      
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 346 --------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 405
                                     YILKDS KNTNRRDKSNFILVPRREDQSATSS I
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSAI 240

Query: 406 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 465
           GISDVGTAD GKKKILLLKGK RD+SH++D MLQ QSATSSGNSPA              
Sbjct: 241 GISDVGTADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPAXXXXXXXXXXXXXX 300

Query: 466 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 525
             RSILLNN+ARHGQSSSVAQSHQKIQILNSDNGKRPPRP N+RSGSND+SSN+PNPSGS
Sbjct: 301 XXRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGS 360

Query: 526 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 585
           EGDGKR  +NKF+KKE HGLG+ASEKQEKRIRNKDRPDRGVWAPR RSDASVSQL+ESSV
Sbjct: 361 EGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 420

Query: 586 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKD 645
            QS+HLLSDSVEA+RGEMK+D+HGSRTGDVTT VSGR+SSVENG VRHVGRRGA H+MKD
Sbjct: 421 PQSSHLLSDSVEAFRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVGRRGAGHVMKD 480

[Close]

BLAST of Carg21723 vs. TrEMBL
Match: tr|A0A1S4E378|A0A1S4E378_CUCME (regulator of nonsense transcripts UPF3 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498712 PE=4 SV=1)

HSP 1 Score: 717.6 bits (1851), Expect = 2.7e-203
Identity = 378/454 (83.26%), Postives = 400/454 (88.11%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGR+N  YYRPGKTSQK+QRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285
           T PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS+KKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345
           FLKLIAKP EHLPSAEIQLERKEAEQSG AK+TPIVTPLMEFVRQKRAVESGTQ      
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 346 --------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSGI 405
                                     YILKDS KNTNRRDKSNFILVPRR+DQSA SSGI
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRRDDQSANSSGI 240

Query: 406 GISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGS 465
           GISDVG AD GKKKILLLKGK RD+SH++D MLQ QSATSSGNSPA+A+K N RREAGGS
Sbjct: 241 GISDVGAADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASKHNHRREAGGS 300

Query: 466 MIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGS 525
           +IRSILLNN+ARHGQSSSVAQSHQKIQILNSDNGKRPPRP N+RSGSND+SSN+PNPSGS
Sbjct: 301 VIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDISSNEPNPSGS 360

Query: 526 EGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSV 585
           EGDGKR  +NKF+KKE HGLG+ASEKQEKRIRNKDRPDRGVWAPR RSDASVSQL+ESSV
Sbjct: 361 EGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSV 420

Query: 586 SQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTV 588
           SQS+HLLSDSVEAYRGEMK+D+HGSRT DVTT V
Sbjct: 421 SQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIV 454

[Close]

BLAST of Carg21723 vs. TrEMBL
Match: tr|A0A251RI33|A0A251RI33_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G550000 PE=4 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 3.4e-153
Identity = 323/527 (61.29%), Postives = 375/527 (71.16%), Query Frame = 0


Query: 166 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDF 225
           MKDPL RTKV++RHLPPSL HSDL   I  + A RYN   +RPGK SQK QRY+RAYIDF
Sbjct: 1   MKDPLVRTKVLVRHLPPSLSHSDLLQQIDHQLADRYNWFCFRPGKNSQKNQRYSRAYIDF 60

Query: 226 TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 285
             PEDVFEFAEFFDGHVFVNEKG+Q+KA+VEYAPSQRVP+  +KKDGREGTIYKDPDYLE
Sbjct: 61  KRPEDVFEFAEFFDGHVFVNEKGSQFKAIVEYAPSQRVPKPCTKKDGREGTIYKDPDYLE 120

Query: 286 FLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQ------ 345
           FLKLIAKP EHLPSAEIQLERKEAEQ+G AK+ PI+TPLME+VRQKRA+ SGTQ      
Sbjct: 121 FLKLIAKPVEHLPSAEIQLERKEAEQAGGAKEPPIITPLMEYVRQKRAIGSGTQVSSVVR 180

Query: 346 ---------------------------YILKDSGKNTNRRDKSNFILVPRREDQSATSSG 405
                                      YILKDS K+T+R+DKS F +VPRREDQ A+SSG
Sbjct: 181 KVRRRAGAASLNKRGSTSTKRVSEKKKYILKDSAKHTSRKDKSTFTVVPRREDQLASSSG 240

Query: 406 IGI--SDVGT-------ADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATK 465
                +++G+       ADSGKKKILLLKGK R++    +GML   S TS+G+  + A K
Sbjct: 241 KETLENEIGSVSGIPVIADSGKKKILLLKGKEREIPSAPEGMLPQGSVTSAGSYVSAAPK 300

Query: 466 QNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSN-D 525
           QNQRREAGG +IR+ILLNN+ R  QSS+  Q  QKI  LNSD  KR  RP N+R G N  
Sbjct: 301 QNQRREAGGKLIRNILLNNEGRQSQSSTEIQPQQKILSLNSD-VKRASRPSNARLGLNGQ 360

Query: 526 MSSNDPNPSGSEGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSD 585
           +S+N+PN   SEGD KR   +KF+KK+ HG  N SEKQEK  RNKDRPDRGVWAP  R+D
Sbjct: 361 VSNNEPNSMSSEGDRKRATVDKFSKKDLHGTTNVSEKQEKHTRNKDRPDRGVWAPLRRAD 420

Query: 586 AS-VSQLDESSVSQSTHLLSDSVEAYRGEMKDDV-HGSRTGDVTTTVSGRSSS-VENGLV 645
           +S  S     SV Q   L SDS E   GE+KDD  +GSRTG+V    SGR+SS VENG  
Sbjct: 421 SSHASDEHLPSVPQRPQLPSDSFEVSHGEVKDDTSYGSRTGEVINPTSGRNSSHVENGSQ 480

The following BLAST results are available for this feature:

BLAST of Carg21723 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948756.1	2.8e-260	92.95	regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita moschata]	[more]
XP_023523934.1	1.1e-259	92.95	regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita pepo subsp. pe...	[more]
XP_022973412.1	2.4e-259	92.76	regulator of nonsense transcripts UPF3-like isoform X1 [Cucurbita maxima]	[more]
XP_022948757.1	3.9e-254	91.59	regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita moschata]	[more]
XP_023523936.1	1.5e-253	91.59	regulator of nonsense transcripts UPF3-like isoform X2 [Cucurbita pepo subsp. pe...	[more]

BLAST of Carg21723 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33980.2	5.2e-99	43.71	Smg-4/UPF3 family protein	[more]
AT4G09960.3	1.2e-58	59.01	K-box region and MADS-box transcription factor family protein	[more]
AT2G42830.2	2.7e-47	51.15	K-box region and MADS-box transcription factor family protein	[more]
AT4G18960.1	2.1e-44	57.71	K-box region and MADS-box transcription factor family protein	[more]
AT3G58780.3	5.3e-43	48.80	K-box region and MADS-box transcription factor family protein	[more]

BLAST of Carg21723 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FVW4\|RENT3_ARATH	1.0e-99	44.07	Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 P...	[more]
sp\|Q38836\|AGL11_ARATH	2.1e-57	59.01	Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=...	[more]
sp\|P29385\|AGL5_ARATH	1.5e-47	51.63	Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana OX=3702 GN=AGL5 PE=1 ...	[more]
sp\|P29381\|AGL1_ARATH	1.2e-44	55.43	Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana OX=3702 GN=AGL1 PE=1 ...	[more]
sp\|Q40885\|AG_PETHY	2.0e-44	50.72	Floral homeotic protein AGAMOUS OS=Petunia hybrida OX=4102 GN=AG1 PE=1 SV=1	[more]

BLAST of Carg21723 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CB69\|A0A1S3CB69_CUCME	2.7e-235	84.34	regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A1S3CBX5\|A0A1S3CBX5_CUCME	1.2e-230	83.56	regulator of nonsense transcripts UPF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A0A0KSY5\|A0A0A0KSY5_CUCSA	2.1e-227	82.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 PE=4 SV=1	[more]
tr\|A0A1S4E378\|A0A1S4E378_CUCME	2.7e-203	83.26	regulator of nonsense transcripts UPF3 isoform X3 OS=Cucumis melo OX=3656 GN=LOC...	[more]
tr\|A0A251RI33\|A0A251RI33_PRUPE	3.4e-153	61.29	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G550000 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0046983	protein dimerization activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0045944	positive regulation of transcription from RNA polymerase II promoter
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR033896	MADS_MEF2-like
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR036879	TF_MADSbox_sf
IPR005120	UPF3_dom
IPR002487	TF_Kbox
IPR002100	TF_MADSbox

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21723-RA	Carg21723-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 80..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 580..595
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 570..595
None	No IPR available	PANTHER	PTHR13112	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	coord: 339..642 coord: 167..339
None	No IPR available	PANTHER	PTHR13112:SF3	SUBFAMILY NOT NAMED	coord: 339..642 coord: 167..339
None	No IPR available	CDD	cd12455	RRM_like_Smg4_UPF3	coord: 174..259 e-value: 5.5881E-31 score: 116.198
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 72.99 coord: 23..38 score: 86.34 coord: 38..59 score: 64.74
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 1.3E-42 score: 157.5
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 10..57 e-value: 4.5E-26 score: 90.0
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 3..57
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 34.09
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 62..127 e-value: 1.5E-18 score: 66.6
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 43..133 score: 11.22
IPR005120	UPF3 domain	PFAM	PF03467	Smg4_UPF3	coord: 171..333 e-value: 6.9E-50 score: 169.4
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	G3DSA:3.40.1810.10		coord: 13..68 e-value: 3.0E-25 score: 89.5
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	SSF55455	SRF-like	coord: 2..69
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 172..263 e-value: 1.5E-28 score: 101.3
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 2..62 e-value: 2.11819E-37 score: 133.832
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 173..262

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21723	Cla012515	Watermelon (97103) v1	carwmB0053
Carg21723	Csa5G650630	Cucumber (Chinese Long) v2	carcuB0055
Carg21723	MELO3C022210	Melon (DHL92) v3.5.1	carmeB0051
Carg21723	ClCG08G000400	Watermelon (Charleston Gray)	carwcgB0057
Carg21723	CSPI05G31330	Wild cucumber (PI 183967)	carcpiB0059
Carg21723	Cucsa.061690	Cucumber (Gy14) v1	carcgyB0059
Carg21723	CmaCh01G008370	Cucurbita maxima (Rimu)	carcmaB0067
Carg21723	CmaCh09G012310	Cucurbita maxima (Rimu)	carcmaB0061
Carg21723	CmoCh01G008770	Cucurbita moschata (Rifu)	carcmoB0070
Carg21723	CmoCh09G013210	Cucurbita moschata (Rifu)	carcmoB0064
Carg21723	Lsi08G000310	Bottle gourd (USVL1VR-Ls)	carlsiB050
Carg21723	Cp4.1LG02g10680	Cucurbita pepo (Zucchini)	carcpeB0073
Carg21723	Cp4.1LG06g10110	Cucurbita pepo (Zucchini)	carcpeB0075
Carg21723	CsGy5G030640	Cucumber (Gy14) v2	carcgybB0056
Carg21723	MELO3C022210.2	Melon (DHL92) v3.6.1	carmedB0052
Carg21723	CsaV3_5G040370	Cucumber (Chinese Long) v3	carcucB0061
Carg21723	Cla97C08G144830	Watermelon (97103) v2	carwmbB0054
Carg21723	Bhi06G000209	Wax gourd	carwgoB0058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21723	Wax gourd	carwgoB0059
Carg21723	Cucumber (Gy14) v2	carcgybB0055
Carg21723	Cucurbita pepo (Zucchini)	carcpeB0070