Carg21700 (gene) Silver-seed gourd

Overview
NameCarg21700
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_132 : 236307 .. 238862 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGAGTGCAAAGAAAGAAGGCATTTCCTTTGCTTTCTTGCTTATAAACTTCAGAAACAACACTGTTCAGAAGATGATAAGCCAGAGATTTCAGGAGATGGGAACTAGTCAAAGAAGGTACATTTTTTCTCCTTATCCTCTTTCAACCACCTAGCACCGAGATTGGCTCCAGACTTCCGCTCCTGGTCTCACATGCAAATTGTTGGCATTTCAGGCTGGCCATTACTGACTCGCAGCCCAACACTATTATTTTTCATAAAAAGCTAAGAAACAGCTATGAGTCGCATCGCAGAAACCGGATTCGAACTAGTAAAAAAGTGGTCAAATCGGTGTCAACTGCCGTCCTGTTGTCAAAGCGTAGCCATCAGCGCTCACATATTTTCGGAGGGCTAGATTGAACTTAACTGGCAAAGTGTTGGCAGTTTGTTTAAATTACCACATACACGTTAAATGGAAAGAATGGAATTTCGAGGAATTAATCACATGAGATTCACCTGTAGCTGCTTACTGCTACGTCTTTATAAATGGAACCGACCAATAACAATACGTAATATTCTGTTTTTGTGTGGGATTTATGTTAGCTTCCCGTCAGGGTGCGTTGTTAAAAATCATCAGTTGTATTAGGGCAAGATGGTCCTTCCACGCATCCAACCCGGTTTCTAATATCCGGTTTCAATACAATAACCTCTCTGCGAGTTTTCCCGCCCTCATCCAAGCTCGATTTTCTATGACTTATGGCCACCTGATGTCAGTTCAACAGATCCTACCGGCGTTGCGCTTCTGACGAGGGAGCGAGCCCATGACCGGAGTCTCAATCTCATTGCCCTCTTAACAGTTTGAGAAATAGGTCCGAGGGCGTTGCGCCGATGCCTCCCATCAAATTATTGGGCTTTTATAACCCCGATAGATAAGCTTCTCGATACCGCACGACGGACGCCCTTCCAGCTAATTACCCTAAGAGGGAAACTTCGGAGGAGTAACGCATGTTTACTTTAGAGAACCTTAAGGGGAAGCCCATAAGGGAACGTGTCCCGAAAGGATTAAGATACTATTTCGTGCCCTCATAATTAGATGCCAATCAAAGTAGGCTTGGAGCGTCTTGTTTATGACAACAATCAGTTAATAGTATGCTGCAGAGGGCCCTCACCAGAGTTTCACCTCATTATGCGTCGACTCTCGCGCGGTGAGGCATAGCTATACTCAATGTCTTCGCACGAGGCTCCGCAGAAGTGACTAGGGCAGCTCACACTCGAGCCCTCACCCTTGGTCGAAAAGATAGATCAAGTTCGTGGTGGTGAGATCTGGTAGCACCCAGCAACAAGCAGGATCTCCGAACCGAGTTTAGCAGCTACGTAGTATGCGGCTATATACGAATATTTCGTGTGTATAAAGGACTGGATAGGTTTACTTCGCCACCGTCACCAGCACAACATTGCAGCACATTGTCGAACACTTTGTGGTCGGTTTGTTTTCAAGAACGAGTACGTTATATGGGAATGCGAAAAGGAGGACGAATGCCTCGAAAGGAAAAAGGAAGGGCACGGGCTGGGAGAGGCATTCGAGAAAGTAGTGTGCGCGAGCCTGCACATAGAGCTTTAAGCTCAACGATCGGGAACGACGTACCTGTTCTCTACCACTAACCTACAAAAGCCGTCGTGGCTTTTGTGTCCGTTCCGTGTGTGTTTCTCAATACACCGTGCGTATCTAAGGCTCAGTCGAAATTGGCGGAACTGCTTTCAACCTTCCATGACATCTACCGATCTTTACTGGCAGGCTATTTGCTCAGGAGGGTGATACAGTTTTCCTCGCTCTCTCGCTAACCCCAGACGAAACTTTAATAAACGAAAAGCTACTAGTTCTCGTGACTTTCCTTTCCACTCAAAAGTACTCCTTATCTTTCCCGCGGTATATGTGTGAGGCATATCTGGGTATCATTCCACAGCCAAGAACAAGATCCTTCAAAGAGGGTACCGATGAAAATTGCAGCTATATCCACTTTCCTAACTCTTTTTAGTCCCATTGGCACGCACTTGCTCGCGGTTGTCACGAATGCAAGCAGAAGCTTTAAGATATCTGGGATCCTGGCATTCACGCACCCAACTTTCCGTGACACGCGCCTTCGTGGTCTGCGACGGTCCATTTTCCAGATAAAAAGGAGTCCAAAGGGTTACAATGGCATTTTTCAAACCAAATGAAAGAAGATTATGATTCAAGGGACATAGAGTTTTGGGCTCGAAGCGTCCCCGGGGCTTCAGTTCCCCATCCCTTCGCCTGGCGACGACTCCAGCTGCACTCTCCTTCAATCTCACGCGTCAAGTTGTGCACGGTCCGGGTCGGCGGGCCTTCTCCTCACTTTCGCGTCCGAGGGCGCCCGCTTTCTCCGCTGGGCTCTTCCCGGTTCGCTCTCGCGTTACTGGGTCTTGTACGTTTTTTTCCACTGACAGCTGAATCTGTGCGGAACGAGTTACAATATGACCCGAATTATAAGAGTACAGGCGGGGAAAGCCACAAGAACCACCACTTCCAGGAGTCGGCACAGAATGCACATTAA

mRNA sequence

ATGGAGTTGAGTGCAAAGAAAGAAGGCATTTCCTTTGCTTTCTTGCTTATAAACTTCAGAAACAACACTGTTCAGAAGATGATAAGCCAGAGATTTCAGGAGATGGGAACTAGTCAAAGAAGTTCAACAGATCCTACCGGCGTTGCGCTTCTGACGAGGGAGCGAGCCCATGACCGGAGTCTCAATCTCATTGCCCTCTTAACAATGCCAATCAAAGTAGGCTTGGAGCGTCTTGTTTATGACAACAATCAGTTAATAGTATGCTGCAGAGGGCCCTCACCAGAGTTTCACCTCATTATGCGTCGACTCTCGCGCGCACCCAGCAACAAGCAGGATCTCCGAACCGAGTTTAGCAGCTACGTAGTATGCGGCTATATACGAATATTTCGTGTGTATAAAGGACTGGATAGGTTTACTTCGCCACCGTCACCAGCACAACATTGCAGCACATTGTCGAACACTTTGTGGTCGGTTTGTTTTCAAGAACGAGTACGTTATATGGGAATGCGAAAAGGAGGACGAATGCCTCGAAAGGAAAAAGGAAGGGCACGGGCTGGGAGAGGCATTCGAGAAAGTAGTGTGCGCGAGCCTGCACATAGAGCTTTAAGCTCAACGATCGGGAACGACGTACCTGCTCAGTCGAAATTGGCGGAACTGCTTTCAACCTTCCATGACATCTACCGATCTTTACTGGCAGGCTATTTGCTCAGGAGGGTGATACACCAAGAACAAGATCCTTCAAAGAGGGTACCGATGAAAATTGCAGCTATATCCACTTTCCTAACTCTTTTTAGTCCCATTGGCACGCACTTGCTCGCGGTTGTCACGAATGCAAGCAGAAGCTTTAAGATATCTGGGATCCTGGCATTCACGCACCCAACTTTCCGTGACACGCGCCTTCGTGAAGATTATGATTCAAGGGACATAGAGTTTTGGGCTCGAAGCGTCCCCGGGGCTTCAGTTCCCCATCCCTTCGCCTGGCGACGACTCCAGCTGCACTCTCCTTCAATCTCACGCGTCAAGTTGTGCACGGTCCGGGTCGGCGGGCCTTCTCCTCACTTTCGCGTCCGAGGGCGCCCGCTTTCTCCGCTGGGCTCTTCCCGGTTCGCTCTCGCGTTACTGGGTCTTGTACGTTTTTTTCCACTGACAGCTGAATCTGTGCGGAACGAGTTACAATATGACCCGAATTATAAGAGTACAGGCGGGGAAAGCCACAAGAACCACCACTTCCAGGAGTCGGCACAGAATGCACATTAA

Coding sequence (CDS)

ATGGAGTTGAGTGCAAAGAAAGAAGGCATTTCCTTTGCTTTCTTGCTTATAAACTTCAGAAACAACACTGTTCAGAAGATGATAAGCCAGAGATTTCAGGAGATGGGAACTAGTCAAAGAAGTTCAACAGATCCTACCGGCGTTGCGCTTCTGACGAGGGAGCGAGCCCATGACCGGAGTCTCAATCTCATTGCCCTCTTAACAATGCCAATCAAAGTAGGCTTGGAGCGTCTTGTTTATGACAACAATCAGTTAATAGTATGCTGCAGAGGGCCCTCACCAGAGTTTCACCTCATTATGCGTCGACTCTCGCGCGCACCCAGCAACAAGCAGGATCTCCGAACCGAGTTTAGCAGCTACGTAGTATGCGGCTATATACGAATATTTCGTGTGTATAAAGGACTGGATAGGTTTACTTCGCCACCGTCACCAGCACAACATTGCAGCACATTGTCGAACACTTTGTGGTCGGTTTGTTTTCAAGAACGAGTACGTTATATGGGAATGCGAAAAGGAGGACGAATGCCTCGAAAGGAAAAAGGAAGGGCACGGGCTGGGAGAGGCATTCGAGAAAGTAGTGTGCGCGAGCCTGCACATAGAGCTTTAAGCTCAACGATCGGGAACGACGTACCTGCTCAGTCGAAATTGGCGGAACTGCTTTCAACCTTCCATGACATCTACCGATCTTTACTGGCAGGCTATTTGCTCAGGAGGGTGATACACCAAGAACAAGATCCTTCAAAGAGGGTACCGATGAAAATTGCAGCTATATCCACTTTCCTAACTCTTTTTAGTCCCATTGGCACGCACTTGCTCGCGGTTGTCACGAATGCAAGCAGAAGCTTTAAGATATCTGGGATCCTGGCATTCACGCACCCAACTTTCCGTGACACGCGCCTTCGTGAAGATTATGATTCAAGGGACATAGAGTTTTGGGCTCGAAGCGTCCCCGGGGCTTCAGTTCCCCATCCCTTCGCCTGGCGACGACTCCAGCTGCACTCTCCTTCAATCTCACGCGTCAAGTTGTGCACGGTCCGGGTCGGCGGGCCTTCTCCTCACTTTCGCGTCCGAGGGCGCCCGCTTTCTCCGCTGGGCTCTTCCCGGTTCGCTCTCGCGTTACTGGGTCTTGTACGTTTTTTTCCACTGACAGCTGAATCTGTGCGGAACGAGTTACAATATGACCCGAATTATAAGAGTACAGGCGGGGAAAGCCACAAGAACCACCACTTCCAGGAGTCGGCACAGAATGCACATTAA

Protein sequence

MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQRSSTDPTGVALLTRERAHDRSLNLIALLTMPIKVGLERLVYDNNQLIVCCRGPSPEFHLIMRRLSRAPSNKQDLRTEFSSYVVCGYIRIFRVYKGLDRFTSPPSPAQHCSTLSNTLWSVCFQERVRYMGMRKGGRMPRKEKGRARAGRGIRESSVREPAHRALSSTIGNDVPAQSKLAELLSTFHDIYRSLLAGYLLRRVIHQEQDPSKRVPMKIAAISTFLTLFSPIGTHLLAVVTNASRSFKISGILAFTHPTFRDTRLREDYDSRDIEFWARSVPGASVPHPFAWRRLQLHSPSISRVKLCTVRVGGPSPHFRVRGRPLSPLGSSRFALALLGLVRFFPLTAESVRNELQYDPNYKSTGGESHKNHHFQESAQNAH
Homology
[Close]
BLAST of Carg21700 vs. NCBI nr
Match: XP_022949514.1 (uncharacterized protein LOC111452841 [Cucurbita moschata])

HSP 1 Score: 79.0 bits (193), Expect = 4.4e-11
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 41
          MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR
Sbjct: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 40

[Close]
BLAST of Carg21700 vs. NCBI nr
Match: XP_022998325.1 (uncharacterized protein LOC111492995 [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-10
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 0 

Query: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 41
          MELSAKKEGISFA LLINFRNNTVQKMISQRFQEMGTSQR
Sbjct: 1  MELSAKKEGISFASLLINFRNNTVQKMISQRFQEMGTSQR 40

[Close]
BLAST of Carg21700 vs. NCBI nr
Match: XP_023525856.1 (uncharacterized protein LOC111789346 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-09
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 1  MELSAKKEGISFAFLLINFRNNTVQKMISQRFQEMGTSQR 41
          MELSAK+EGISFA L INFRNNTVQKMISQRFQEMGTSQR
Sbjct: 1  MELSAKQEGISFASLPINFRNNTVQKMISQRFQEMGTSQR 40

The following BLAST results are available for this feature:
BLAST of Carg21700 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949514.14.4e-11100.00uncharacterized protein LOC111452841 [Cucurbita moschata][more]
XP_022998325.13.7e-1097.50uncharacterized protein LOC111492995 [Cucurbita maxima][more]
XP_023525856.17.0e-0992.50uncharacterized protein LOC111789346 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg21700 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg21700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg21700 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21700-RACarg21700-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 395..418

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg21700Silver-seed gourdcarcarB056
Carg21700Silver-seed gourdcarcarB057
Carg21700Silver-seed gourdcarcarB058
Carg21700Silver-seed gourdcarcarB060
Carg21700Cucumber (Gy14) v2carcgybB0052
Carg21700Cucumber (Gy14) v2carcgybB0053
Carg21700Cucumber (Gy14) v2carcgybB0054
Carg21700Cucumber (Gy14) v2carcgybB0055
Carg21700Cucumber (Gy14) v1carcgyB0060
Carg21700Cucumber (Gy14) v1carcgyB0061
Carg21700Cucumber (Gy14) v1carcgyB0062
Carg21700Cucurbita maxima (Rimu)carcmaB0062
Carg21700Cucurbita maxima (Rimu)carcmaB0063
Carg21700Cucurbita maxima (Rimu)carcmaB0065
Carg21700Cucurbita maxima (Rimu)carcmaB0066
Carg21700Cucurbita maxima (Rimu)carcmaB0067
Carg21700Cucurbita maxima (Rimu)carcmaB0068
Carg21700Cucurbita moschata (Rifu)carcmoB0065
Carg21700Cucurbita moschata (Rifu)carcmoB0066
Carg21700Cucurbita moschata (Rifu)carcmoB0068
Carg21700Cucurbita moschata (Rifu)carcmoB0069
Carg21700Cucurbita moschata (Rifu)carcmoB0070
Carg21700Cucurbita moschata (Rifu)carcmoB0071
Carg21700Cucurbita moschata (Rifu)carcmoB0072
Carg21700Cucurbita pepo (Zucchini)carcpeB0067
Carg21700Cucurbita pepo (Zucchini)carcpeB0068
Carg21700Cucurbita pepo (Zucchini)carcpeB0069
Carg21700Cucurbita pepo (Zucchini)carcpeB0070
Carg21700Cucurbita pepo (Zucchini)carcpeB0071
Carg21700Cucurbita pepo (Zucchini)carcpeB0073
Carg21700Cucurbita pepo (Zucchini)carcpeB0074
Carg21700Wild cucumber (PI 183967)carcpiB0056
Carg21700Wild cucumber (PI 183967)carcpiB0057
Carg21700Wild cucumber (PI 183967)carcpiB0058
Carg21700Cucumber (Chinese Long) v2carcuB0052
Carg21700Cucumber (Chinese Long) v2carcuB0053
Carg21700Cucumber (Chinese Long) v2carcuB0054
Carg21700Cucumber (Chinese Long) v3carcucB0058
Carg21700Cucumber (Chinese Long) v3carcucB0059
Carg21700Cucumber (Chinese Long) v3carcucB0060
Carg21700Bottle gourd (USVL1VR-Ls)carlsiB047
Carg21700Bottle gourd (USVL1VR-Ls)carlsiB048
Carg21700Bottle gourd (USVL1VR-Ls)carlsiB049
Carg21700Melon (DHL92) v3.5.1carmeB0052
Carg21700Melon (DHL92) v3.5.1carmeB0053
Carg21700Melon (DHL92) v3.5.1carmeB0054
Carg21700Melon (DHL92) v3.6.1carmedB0053
Carg21700Melon (DHL92) v3.6.1carmedB0054
Carg21700Melon (DHL92) v3.6.1carmedB0055
Carg21700Watermelon (Charleston Gray)carwcgB0054
Carg21700Watermelon (Charleston Gray)carwcgB0055
Carg21700Watermelon (Charleston Gray)carwcgB0056
Carg21700Watermelon (97103) v1carwmB0054
Carg21700Watermelon (97103) v1carwmB0055
Carg21700Watermelon (97103) v1carwmB0056
Carg21700Watermelon (97103) v2carwmbB0053
Carg21700Watermelon (97103) v2carwmbB0052
Carg21700Watermelon (97103) v2carwmbB0051
Carg21700Wax gourdcarwgoB0059
Carg21700Wax gourdcarwgoB0061
Carg21700Wax gourdcarwgoB0062
Carg21700Wax gourdcarwgoB0063