Carg21543 (gene) Silver-seed gourd

NameCarg21543
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionimportin-9
LocationCucurbita_argyrosperma_scaffold_118 : 98331 .. 103662 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAATGTGATTGATCAAGATCAACAGTGGCTTCTCAATTGCTTGTCCGCCACTCTTGACCCCAACCAGGAGGTTCGCTCATTCGCTGAAACCTCGCTAAATCAGGCATCTCTCCAACCAGGTTCTTGCCGTCACCGTAATTCTCAGCTAATTGTTATCTGTACTATCGAGTGTCTTCCCATATGGAATCATTTTTCTATGTTACCCGAACAGTAAATGAATCGCATTCCCGCCTCGTTGGCGTGGATATGCGATTGTGTTAGGCAGGATTGATATGTCATATACATACGTTTCTGTACTGTAGGAAGATCAGGAACAGATTAAGTTTTCTGGTTCGTTCTGTCTTTCACTATCTGATTAACTTATTCTACTACTGGATTTAATTGTGATACTTCATTCATCTTAAAGGTTTTGGGGTTGCATTATCCAAAGTCACTGCGAACAGGGAGCTGCCAGTAGGATTGCGCCAGATATCCTTTGTTGTCGTTGCAATTGAGATTCTTAATTTTTCTGCGTGATTTTCTTCCTGTTTTGTTTTCTTTCATGTGCTCTTAGGAAGCGTAAACACTGCAATTTTAATCCTTGCACTTAGTTTTCCGAAGTATGGAAATTATCTTCACTTGTGTTTAAGCTTTCGCTTTCTTTCTTTCTTTCTCTTTTTTGGTTGCCGGTGGTTGTTATAGACGAGGACATGCGATTCAAGATCATCCATGATTTTTGGATAGAACTTAACGCTTTTACCTAGCTGCAGTCCTTCTAAAGCAGTTCATCAAAAAACACTGGCAGGAGGGTGACGAATTATTTGAACATCCCACTGTTTCTGACGATGATAAGGTATCTATTTTACACCAAATGCTGTTATTCGTTGTTTTCACATCTGCAATTCTCTTTCTGTCTTGCGACATCCAATGCCACTACTTGGGTATATCCTCTCAATATTGAAATTCTACATTTCTAGTTCACTGTTTTTTTTTTTTCCTTTTCGGGCAGTCATTCCCAAGCTTCTTTTGTTAACTTTGGATGATTCCCATTGAAAAATTTGTACAGCAATTAGTATGGCCGTGGCATCAATCGCTATATATGACTGGCCAGAGGAATGGCCTGAGTTATTGCCTTACCTCTTAAATTTGATGAATAATCGAATTAATATGAATGGGGGTGGTGCTTTAACAGTTTATTTCATGTGGTTGCATCCTTTTGCTGTTTCACTTTGTTTAGAGGCTTAGAATTTTACTCTCTTCATGAAGGTCCGTTTATGTTTTCTTTTAAATACTTCAACTTACTCAAAGCAAATGATCCATTCGTCATAAACTCATTGGTTTTTCCTTTGGATTAATATTTCATATTTTGGCATACCTTCAATGTGATGATTGTTAACATGTAAATCTTCATTGAATAAAATTTTGATTCATAGTAAATTTTGTAGTACATGGAGGTCTAAGGTGCTTGGCTCTACTCTCTGGGGAATTGGATTGTGAAATGATTCCAAGACTAGTACCTGCTTTGTTCCCTCACCTGTTTTGAATTGTTTCATCCCCAGAGGTATGAATGCATTTTCTTAAAGATGAAAATTTATTTTTGTGATTCAATTTCATCCCCAGAGGTATGAATGCATTTTCTTAAAGATGAAAATTTATTTTTGTGATTCAACCTTCTTTAAAAGTTTTTTTGTTGAATGTTGTCAATGCATTGTCATATGCTTTGTGTGATTCAACCCTCTTTAAAAGATGGGTTATTTGAACTCTGCCTTGGGTTTCTTAGAGTTGTGTTCAACACTCGCACACTTTATTAAGACCAATTGAGACGAGAGTACAAGATACTTTGTAGAAACCACTACTTTGTGTTGCTTGGTATTTCTTGGGATGATGAACTAGGTAGGGTGGAGGGGTCTTTATACTAGATTGTAGTCAATCTATTCCTAAAATTTCTCCATGTTTTTCCTAAAATACCTAAATCATTTTCCTAACTTTATTCCTAAAATCCCTAAATCATTTTCCTACGTTTATTCCTAAAATCCTAAATCATAAATATAATTACTCATACAATGGTTGGGTTTAATCCTATTGGGCTAGTGATGACATTTTAACAATAGTTGCATGTCCGTGATCTATTAGGCTCAAACAAGAACATTAAGCATTTAGCAACTAGCTTTCACGAGTAAGCTTGGGTAAGAGAGTGCGATTGAAGAGGATTAAGGATTGGCCAATTATGAAGACTTCAGTAATATTTACTCTTAGAATCTAACTTGGAGTTTAATTTATTTTAAAGCACTTCTATTTTAAGGCAAAGCAGAGGTGCTGGGTGAGTTCTTTATTCTCCTGCCATCAACCCACTTGATCTTGAATGTGAGAGCTGACTAGGCAAGTTATTCTCTTCAGACCGCATGTAGTTTGTGTGAGATATAAACATTGCCATTAGTTTGTATCTTCATTCACTTAAAAGGCCGTGTGAAATTAATGTAGAGGTATGGGAATGTGTTGGTCTACCAATGAGCTTTAGATTTGGGATTGTAATAGCCCAAGTCCACCGCCAGCAGATATTGTCTTATGGGCTTCCTCTCATGGTTTTAAAACACGTCTACTAGGGAGAGGTTTCCACACTCTTATCAGGAATGTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACAATCCACCCTCCTTGGGGCCCAGCATCCTCGTTGGCACACCGCTCGGTGTCTGGCACTAATACTATTTATAACCGCCCAAACCCACTATTAGCTGATATTGTCCTCTTTAGCCTTTCCTTTTGGGCTTCCCCTCAAAGTTTTAAAACGCATCTAATAGGGAGTGGTTTTCACACTCTTATAAGAAATGCTTTGCTCTCCTCTCCAACCGACATGGGATCTCACAGGGATTCCGGTGTTCTACCGCTAATCTTTCTCTGGAACTTATTCTCGAGGAGATGCTTGATTTACAAAGCTGATATACAGCATGAGATCGGCTTCTACTCCACATCCCCCAACCTCTCCCCCTACAACCGTGTGTGAAAATATAGAATTTAGTTAAAATGAAGGAAAAAAAAAACTGGAAAAAAGAATCTGATCTTGGATCTTTTGTTTGTTAACAGATCAATATTTGAACATCGAGATTGTGTCAAGTATGCAGGCACAACCACTGGTTGCCTTCTCTTTCTTTTTTCAGGGCATAATGATCCTACAAGTTTTGGGTGTGGAATCGATAGTCTTCAGCTTGCTGCTACTTCAAGTTGGTTTACAGGTATCTCTAATTTAATAACTCCACTGCCTTTTGACAGAACATGGTCTGGTCATCTGCTAGATCTTGATGTCATTTTCTTTTAATCTGCTGGTATCATCACCTAATCCTAACCTGTGACTGTTGAAGGCTGGATCATGGACGTAATTCCAATTTTGCAGCTATTATTAAATTCTTTTATTGTGGACTCTTCTCTGAAAGGTTCATAAAGAAATAGATTTATATAACAAATGCTGCTGAATGAAGGTCAGTTATGGAAAAAAGTGAGACCTCATCACTGTCAACACTTTGGATTGCAATTGTAAGAGCTCATGCTCACCACCGGCAGATATTGTCCTTTTTGGGTTTTCCCTTCTAGGCTTCCCCTCAAAGTTTTAAAACGCGTATGTTAGGAACATGTTTCCACACCATTATAAAGAATGCTTCGTTCTCCTCTCGAATCGATACGGGGATCTCACAACGCTAGTGTAACCTAAGAAGTTGCTGATTTGAGAAATGTTCTACAATTAGCAACAAATCTTAATGATATGACAATGTGAATGATGGTTTGCTTCCTTTTTATGCCCCATAAATTGCTGTAGCACCCAACAAAAAGAAAAGCTTAAACTGCACCGTAGAAGTAGAAGCATCTAATGCCCCCCCACCCTTAAAGTTCTACTTTGTAGGGTTGTTGGAGCACAGGAATGTTCCCCTTCTTGATTCAACAGCAGCACAGCACAGCAAAATTAATGGCACAATGCCCTCTTTTTGGGCTTCTTTTTTGCAGCTCCCACTGATGTTAGTGCCAGTGGCTTAAGCATCTTGCACCATGTATATTCCCTTCCAAACATTAGTATAATGTAAAGGAATAGGCTAAAGAAAAGAAACAGGGCAGCCTGTTGGTTGTTACCAAAAGGCCATATGATTATAGCTTTGAAATCGTGCAACCTTTGTCCTCCAACAATAGGTGGTAGTAGGCGTGCAAGAGCTTCACGTGTTATGTTAACACAAAACCTAGGCATTGACCATGGCCCACTATTCTCACTTAACTAATGTTCTCAAATTTTATAATGAAATTTAACAGCCAATTTGTTTATAGGTGACATTTCTTTATCTAGCTAGTAGAATCTTTCTTGATCTAATCAATTGAATACACCCACTTTTTAATTATTATTCCATTTTAATCTTTATTGTTCTTTTCAAATAGTTTATTTATCCATTCGTAAATATAAATTTGAGACCTAATATGGAAATGGGAATTTCGTATAGATTTTGGTTCGTAGATGGATCAGTATTTTATCTATTTCAAATGAAGTAAAACGAAGTGTTCGTTTTGATCTAGTTATTCTTGTTAGATGAACACGACTCTTCACAATGGTATGATATTGGACTTTCATCCAACAATTCTATCATCAATGGCTCTTTTATTTTATAGAGTTGTAGGGAGCTGAGTATATTATGTTCGTCTAATTCAATAATGAAAATGATAGCTATAATTACGAGACTAAATCAAACTTTGAATTAATTGGTTATGGGTTGACTATGGCAAGATATTGAGGACCATGGAATTACGTTGCAAAATTACTCGTTATGATGATGATGATTTTAAATTGAGCCGACGTTATGAAAATTACTTTTGTTCTTGAATTCAAACATTTGACAAAATCTTTATATTCAATCTCTTGGGTTGCTATCAATTTGGGACCCCACAATCTGTGTTCTTCGGAAAGCCTTTTTTTCCTATAGGGAACTCGGGAATCAAACTTGGCTGCTCTTTCGAGGAATTTCTATTTCCGTTTCGATCCTCAGAAAGAAACAAAGTGTGGGGGAAATTTTTGACGGAAAAGGTAAGCTCGTCTTCAGCTTCCAATTTCTTCTCCATGGCTATTTTCATGGTGTCGGTTCGATGCTTTTGCTTCTTCAATCAGCTGGAATCCATTGCTGATTCTGAGTACTTGAACCTTCCCCAAATAGTCTGATAATCGCGCTCCTGTTCAAATTTTTTTAGTAGGTATATCTCTGAACTTGTTTCTTCTTTGATTTGTTCGTAGGTCTGGAGGTGAATTTGATTGTTTCTGTGATGATCTGATTTTAGCTATAATCTCTGGATTGTGA

mRNA sequence

ATGGCCAATGTGATTGATCAAGATCAACAGTGGCTTCTCAATTGCTTGTCCGCCACTCTTGACCCCAACCAGGAGGTTCGCTCATTCGCTGAAACCTCGCTAAATCAGGCATCTCTCCAACCAGGGCATAATGATCCTACAAGTTTTGGGTGTGGAATCGATAGTCTTCAGCTTGCTGCTACTTCAAGTTGGTTTACAGCTCCCACTGATGTTAGTGCCAGTGGCTTAAGCATCTTGCACCATGGAACTCGGGAATCAAACTTGGCTGCTCTTTCGAGGAATTTCTATTTCCGTTTCGATCCTCAGAAAGAAACAAAGTCTGGAGGTGAATTTGATTGTTTCTGTGATGATCTGATTTTAGCTATAATCTCTGGATTGTGA

Coding sequence (CDS)

ATGGCCAATGTGATTGATCAAGATCAACAGTGGCTTCTCAATTGCTTGTCCGCCACTCTTGACCCCAACCAGGAGGTTCGCTCATTCGCTGAAACCTCGCTAAATCAGGCATCTCTCCAACCAGGGCATAATGATCCTACAAGTTTTGGGTGTGGAATCGATAGTCTTCAGCTTGCTGCTACTTCAAGTTGGTTTACAGCTCCCACTGATGTTAGTGCCAGTGGCTTAAGCATCTTGCACCATGGAACTCGGGAATCAAACTTGGCTGCTCTTTCGAGGAATTTCTATTTCCGTTTCGATCCTCAGAAAGAAACAAAGTCTGGAGGTGAATTTGATTGTTTCTGTGATGATCTGATTTTAGCTATAATCTCTGGATTGTGA

Protein sequence

MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGHNDPTSFGCGIDSLQLAATSSWFTAPTDVSASGLSILHHGTRESNLAALSRNFYFRFDPQKETKSGGEFDCFCDDLILAIISGL
BLAST of Carg21543 vs. NCBI nr
Match: XP_012081987.1 (importin-9 [Jatropha curcas] >KDP29326.1 hypothetical protein JCGZ_18247 [Jatropha curcas])

HSP 1 Score: 84.0 bits (206), Expect = 4.1e-13
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0

Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPG 43
          MAN++DQDQQWLLNCL+ATLDPNQEVRSFAE SLNQASLQPG
Sbjct: 1  MANIVDQDQQWLLNCLTATLDPNQEVRSFAEASLNQASLQPG 42

BLAST of Carg21543 vs. NCBI nr
Match: POE54688.1 (hypothetical protein CFP56_25048 [Quercus suber])

HSP 1 Score: 84.0 bits (206), Expect = 4.1e-13
Identity = 41/48 (85.42%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGHNDPTS 49
          MANVIDQDQQWLLNCLSATLDPN EVRSFAE SLNQASLQPG     S
Sbjct: 3  MANVIDQDQQWLLNCLSATLDPNHEVRSFAEASLNQASLQPGFGSALS 50

BLAST of Carg21543 vs. NCBI nr
Match: XP_023897440.1 (importin-9-like, partial [Quercus suber])

HSP 1 Score: 84.0 bits (206), Expect = 4.1e-13
Identity = 41/48 (85.42%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGHNDPTS 49
          MANVIDQDQQWLLNCLSATLDPN EVRSFAE SLNQASLQPG     S
Sbjct: 3  MANVIDQDQQWLLNCLSATLDPNHEVRSFAEASLNQASLQPGFGSALS 50

BLAST of Carg21543 vs. NCBI nr
Match: XP_021673084.1 (importin-9-like isoform X1 [Hevea brasiliensis])

HSP 1 Score: 83.6 bits (205), Expect = 5.4e-13
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0

Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPG 43
          MAN++DQDQQWLLNCL+ATLDPNQEVRSFAE SLNQASLQPG
Sbjct: 1  MANILDQDQQWLLNCLTATLDPNQEVRSFAEASLNQASLQPG 42

BLAST of Carg21543 vs. NCBI nr
Match: XP_021674771.1 (importin-9-like isoform X1 [Hevea brasiliensis])

HSP 1 Score: 83.6 bits (205), Expect = 5.4e-13
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0

Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPG 43
          MAN++DQDQQWLLNCL+ATLDPNQEVRSFAE SLNQASLQPG
Sbjct: 1  MANILDQDQQWLLNCLTATLDPNQEVRSFAEASLNQASLQPG 42

BLAST of Carg21543 vs. TAIR10
Match: AT1G26170.1 (ARM repeat superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0

Query: 4  VIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPG 43
          V+DQDQQWLL CLSA+LDPNQ VRSFAETSLNQASLQPG
Sbjct: 2  VVDQDQQWLLGCLSASLDPNQNVRSFAETSLNQASLQPG 40

BLAST of Carg21543 vs. TrEMBL
Match: tr|A0A2P4HEI2|A0A2P4HEI2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_25048 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-13
Identity = 41/48 (85.42%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGHNDPTS 49
          MANVIDQDQQWLLNCLSATLDPN EVRSFAE SLNQASLQPG     S
Sbjct: 3  MANVIDQDQQWLLNCLSATLDPNHEVRSFAEASLNQASLQPGFGSALS 50

BLAST of Carg21543 vs. TrEMBL
Match: tr|A0A067JZD1|A0A067JZD1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18247 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-13
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 0

Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPG 43
          MAN++DQDQQWLLNCL+ATLDPNQEVRSFAE SLNQASLQPG
Sbjct: 1  MANIVDQDQQWLLNCLTATLDPNQEVRSFAEASLNQASLQPG 42

BLAST of Carg21543 vs. TrEMBL
Match: tr|A0A1S3BFX2|A0A1S3BFX2_CUCME (importin-9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489226 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.6e-13
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPG 43
          MANVIDQDQQWL+NCLSATLDPN EVRSFAE SLNQASLQPG
Sbjct: 1  MANVIDQDQQWLINCLSATLDPNHEVRSFAEASLNQASLQPG 42

BLAST of Carg21543 vs. TrEMBL
Match: tr|A0A1S3BF85|A0A1S3BF85_CUCME (importin-9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489226 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.6e-13
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPG 43
          MANVIDQDQQWL+NCLSATLDPN EVRSFAE SLNQASLQPG
Sbjct: 1  MANVIDQDQQWLINCLSATLDPNHEVRSFAEASLNQASLQPG 42

BLAST of Carg21543 vs. TrEMBL
Match: tr|A0A0A0KQZ8|A0A0A0KQZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608130 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.6e-13
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0

Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPG 43
          MANVIDQDQQWL+NCLSATLDPN EVRSFAE SLNQASLQPG
Sbjct: 1  MANVIDQDQQWLINCLSATLDPNHEVRSFAEASLNQASLQPG 42

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_012081987.14.1e-1390.48importin-9 [Jatropha curcas] >KDP29326.1 hypothetical protein JCGZ_18247 [Jatrop... [more]
POE54688.14.1e-1385.42hypothetical protein CFP56_25048 [Quercus suber][more]
XP_023897440.14.1e-1385.42importin-9-like, partial [Quercus suber][more]
XP_021673084.15.4e-1390.48importin-9-like isoform X1 [Hevea brasiliensis][more]
XP_021674771.15.4e-1390.48importin-9-like isoform X1 [Hevea brasiliensis][more]
Match NameE-valueIdentityDescription
AT1G26170.12.0e-1489.74ARM repeat superfamily protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2P4HEI2|A0A2P4HEI2_QUESU2.7e-1385.42Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_25048 PE=4 SV=1[more]
tr|A0A067JZD1|A0A067JZD1_JATCU2.7e-1390.48Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18247 PE=4 SV=1[more]
tr|A0A1S3BFX2|A0A1S3BFX2_CUCME4.6e-1392.86importin-9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489226 PE=4 SV=1[more]
tr|A0A1S3BF85|A0A1S3BF85_CUCME4.6e-1392.86importin-9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489226 PE=4 SV=1[more]
tr|A0A0A0KQZ8|A0A0A0KQZ8_CUCSA4.6e-1392.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608130 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21543-RACarg21543-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016024Armadillo-type foldSUPERFAMILYSSF48371ARM repeatcoord: 8..46