Carg21520 (gene) Silver-seed gourd

Overview
NameCarg21520
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionnegative regulator of systemic acquired resistance (SNI1)
LocationCucurbita_argyrosperma_scaffold_146 : 370542 .. 371523 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAAATTAGTTTGTAAATCTTTTGCTTATTAACTTTCTAATTTTCTGTACTCTTACTTATTATTTTGTAACATTGCTTTTTTTTTTTAATCAATTTCAAAATATTTTAAAAAAAGTAAGTCAGAAACTTGAGCATATTGTCGCTTGTATAAGTAGTGACTCAAGTTTTAATCAGCGGACTTACTAGCAGGTGTTGCACATTTGTGTTCTAAGTCTCACATGCCCAACTCAGTTTACATTCAGCTCAATCAACTCTAACCAGGCAAGTGCTCCGGTCGGGCTCGATTCTCTGTCCACATGGTTCGGTTTTCGTTTTGGACCGGTTTTTGAACACTCCTCGACCGATTTAAACCGTTCGCCTCTTTTCCATTTCCATTTAATATCAAATCACAAGATTTCAAACATCATTTTCATTTTCTGGGTTTCTGGATTCCCCGCTTGGGAAATTTGGCGGGACAACTAGCAGCACGGGCCGGTCTGCCCTCTCCTTTTGAACTTCGCTATCGTTTTTGTTGAGCAGTTCCACCAGAGGCCGGCAAAGCAATGGAGAAACCTAGCAGCGGCGTTCGAGGGGCGATCGAGGCGAATACCTTGGCTATTCTCGACGCATCCGAAGCTACTAAAGCACACTCGAGACGCGGACGATGACAGTACGATCTTCATTTTAGAATTTGAGTTTTGTTCATTTCTGTTTGGACTCTGAAAACTGCTCGGAACTATGAGAAGAGCAATCGATTTTCTTCTGATGATCTGGAGGACTCTTTAGTGAATACTCTTTGTGGAGTGTGTTTCAGTTGTGCTTGATTTGAAAATAAAATCCTTCTTTTCAATGGAAGCCCTAATGTATCAGTCGGAAGAAAATTACTTGTTTTCGTTTTCGTTGCATTGATCAAGATGTTCATAATCAGGAATTGCTTTTCTCGAAGCTGTTCGTGCGGCTTCACTTTTGCCAGAAAATAAATCGCCACCGACATTGTAA

mRNA sequence

ATGTATAAATTAGTGTTGCACATTTGTGTTCTAAGTCTCACATGCCCAACTCAGTTTACATTCAGCTCAATCAACTCTAACCAGGCAAGTGCTCCGGTCGGGCTCGATTCTCTGTCCACATGGTTCGGTTTTCGTTTTGGACCGTTCCACCAGAGGCCGGCAAAGCAATGGAGAAACCTAGCAGCGGCGTTCGAGGGGCGATCGAGGCGAATACCTTGGCTATTCTCGACGCATCCGAAGCTACTAAAGCACACTCGAGACGCGGACGATGACAGAATTGCTTTTCTCGAAGCTGTTCGTGCGGCTTCACTTTTGCCAGAAAATAAATCGCCACCGACATTGTAA

Coding sequence (CDS)

ATGTATAAATTAGTGTTGCACATTTGTGTTCTAAGTCTCACATGCCCAACTCAGTTTACATTCAGCTCAATCAACTCTAACCAGGCAAGTGCTCCGGTCGGGCTCGATTCTCTGTCCACATGGTTCGGTTTTCGTTTTGGACCGTTCCACCAGAGGCCGGCAAAGCAATGGAGAAACCTAGCAGCGGCGTTCGAGGGGCGATCGAGGCGAATACCTTGGCTATTCTCGACGCATCCGAAGCTACTAAAGCACACTCGAGACGCGGACGATGACAGAATTGCTTTTCTCGAAGCTGTTCGTGCGGCTTCACTTTTGCCAGAAAATAAATCGCCACCGACATTGTAA

Protein sequence

MYKLVLHICVLSLTCPTQFTFSSINSNQASAPVGLDSLSTWFGFRFGPFHQRPAKQWRNLAAAFEGRSRRIPWLFSTHPKLLKHTRDADDDRIAFLEAVRAASLLPENKSPPTL
Homology
[Close]
BLAST of Carg21520 vs. NCBI nr
Match: XP_022927209.1 (negative regulator of systemic acquired resistance SNI1 [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 3.6e-08
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 83  KHTRDADDDRIAFLEAVRAASLLPENKSPPTL 115
           KHTRDADDDRIAFLEAVRAASLLPENKSPPTL
Sbjct: 27  KHTRDADDDRIAFLEAVRAASLLPENKSPPTL 58

[Close]
BLAST of Carg21520 vs. NCBI nr
Match: XP_008442923.1 (PREDICTED: uncharacterized protein LOC103486681 isoform X1 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 83  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 114
           KHTRDADDDRIAFLEAVRAASLLPENKSPPT
Sbjct: 27  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 57

[Close]
BLAST of Carg21520 vs. NCBI nr
Match: XP_008442931.1 (PREDICTED: uncharacterized protein LOC103486681 isoform X2 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 83  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 114
           KHTRDADDDRIAFLEAVRAASLLPENKSPPT
Sbjct: 27  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 57

[Close]
BLAST of Carg21520 vs. NCBI nr
Match: XP_023001716.1 (negative regulator of systemic acquired resistance SNI1 [Cucurbita maxima])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 83  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 114
           KHTRDADDDRIAFLEAVRAASLLPENKSPPT
Sbjct: 27  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 57

[Close]
BLAST of Carg21520 vs. NCBI nr
Match: XP_023519774.1 (negative regulator of systemic acquired resistance SNI1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 83  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 114
           KHTRDADDDRIAFLEAVRAASLLPENKSPPT
Sbjct: 27  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 57

[Close]
BLAST of Carg21520 vs. TAIR10
Match: AT4G18470.1 (negative regulator of systemic acquired resistance (SNI1))

HSP 1 Score: 47.4 bits (111), Expect = 7.0e-06
Identity = 21/31 (67.74%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 83  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 114
           K +RDA++DR+ +LEAVRAASL+PEN  PPT
Sbjct: 36  KDSRDANEDRLQYLEAVRAASLVPENGIPPT 66

[Close]
BLAST of Carg21520 vs. Swiss-Prot
Match: sp|Q9SWA6|SNI1_ARATH (Negative regulator of systemic acquired resistance SNI1 OS=Arabidopsis thaliana OX=3702 GN=SNI1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 21/31 (67.74%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 83  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 114
           K +RDA++DR+ +LEAVRAASL+PEN  PPT
Sbjct: 36  KDSRDANEDRLQYLEAVRAASLVPENGIPPT 66

[Close]
BLAST of Carg21520 vs. TrEMBL
Match: tr|A0A1S3B7L2|A0A1S3B7L2_CUCME (uncharacterized protein LOC103486681 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486681 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.9e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 83  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 114
           KHTRDADDDRIAFLEAVRAASLLPENKSPPT
Sbjct: 27  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 57

[Close]
BLAST of Carg21520 vs. TrEMBL
Match: tr|A0A1S3B6E1|A0A1S3B6E1_CUCME (uncharacterized protein LOC103486681 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486681 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.9e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 83  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 114
           KHTRDADDDRIAFLEAVRAASLLPENKSPPT
Sbjct: 27  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 57

[Close]
BLAST of Carg21520 vs. TrEMBL
Match: tr|A0A0A0LUN6|A0A0A0LUN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G076610 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 83  KHTRDADDDRIAFLEAVRAASLLPENKSPPT 114
           KHT DA+DDRIAFLEAVRAASLLPENKSPPT
Sbjct: 27  KHTPDANDDRIAFLEAVRAASLLPENKSPPT 57

The following BLAST results are available for this feature:
BLAST of Carg21520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022927209.13.6e-08100.00negative regulator of systemic acquired resistance SNI1 [Cucurbita moschata][more]
XP_008442923.11.0e-07100.00PREDICTED: uncharacterized protein LOC103486681 isoform X1 [Cucumis melo][more]
XP_008442931.11.0e-07100.00PREDICTED: uncharacterized protein LOC103486681 isoform X2 [Cucumis melo][more]
XP_023001716.11.0e-07100.00negative regulator of systemic acquired resistance SNI1 [Cucurbita maxima][more]
XP_023519774.11.0e-07100.00negative regulator of systemic acquired resistance SNI1 [Cucurbita pepo subsp. p... [more]
BLAST of Carg21520 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G18470.17.0e-0667.74negative regulator of systemic acquired resistance (SNI1)[more]
BLAST of Carg21520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SWA6|SNI1_ARATH1.3e-0467.74Negative regulator of systemic acquired resistance SNI1 OS=Arabidopsis thaliana ... [more]
BLAST of Carg21520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B7L2|A0A1S3B7L2_CUCME6.9e-08100.00uncharacterized protein LOC103486681 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3B6E1|A0A1S3B6E1_CUCME6.9e-08100.00uncharacterized protein LOC103486681 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LUN6|A0A0A0LUN6_CUCSA1.7e-0693.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G076610 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21520-RACarg21520-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg21520Cla019690Watermelon (97103) v1carwmB0949
Carg21520Csa1G076610Cucumber (Chinese Long) v2carcuB0963
Carg21520MELO3C002630Melon (DHL92) v3.5.1carmeB0930
Carg21520ClCG03G007960Watermelon (Charleston Gray)carwcgB0926
Carg21520CSPI01G12430Wild cucumber (PI 183967)carcpiB0986
Carg21520Cucsa.126980Cucumber (Gy14) v1carcgyB1068
Carg21520CmaCh13G006200Cucurbita maxima (Rimu)carcmaB1297
Carg21520CmoCh13G006420Cucurbita moschata (Rifu)carcmoB1268
Carg21520Lsi02G007840Bottle gourd (USVL1VR-Ls)carlsiB866
Carg21520Cp4.1LG20g04530Cucurbita pepo (Zucchini)carcpeB1314
Carg21520CsGy1G012470Cucumber (Gy14) v2carcgybB0936
Carg21520MELO3C002630.2Melon (DHL92) v3.6.1carmedB0936
Carg21520CsaV3_1G012630Cucumber (Chinese Long) v3carcucB0991
Carg21520Cla97C03G059220Watermelon (97103) v2carwmbB1000
Carg21520Bhi08G001856Wax gourdcarwgoB1101
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg21520Wild cucumber (PI 183967)carcpiB0987
Carg21520Cucumber (Chinese Long) v2carcuB0964
Carg21520Cucumber (Chinese Long) v3carcucB0992
Carg21520Bottle gourd (USVL1VR-Ls)carlsiB865
Carg21520Melon (DHL92) v3.5.1carmeB0931
Carg21520Melon (DHL92) v3.6.1carmedB0937
Carg21520Watermelon (Charleston Gray)carwcgB0924
Carg21520Watermelon (97103) v1carwmB0950
Carg21520Wax gourdcarwgoB1098
Carg21520Silver-seed gourdcarcarB179
Carg21520Silver-seed gourdcarcarB509
Carg21520Cucumber (Gy14) v2carcgybB0937
Carg21520Cucumber (Gy14) v1carcgyB1067
Carg21520Cucurbita maxima (Rimu)carcmaB1298
Carg21520Cucurbita moschata (Rifu)carcmoB1269
Carg21520Cucurbita moschata (Rifu)carcmoB1270
Carg21520Cucurbita pepo (Zucchini)carcpeB1312