Carg21519 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21519
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NAC domain-containing protein 8
Location	Cucurbita_argyrosperma_scaffold_146 : 368905 .. 370148 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATATGATGTTGAATTGAAAGGCTGGGATTCATGAATCTTTCTGCTGCTACCAGCTTGGAGTCAAATTGACCCAACCGATCAAGAAAATCCTCTCGAGCACTTAGAGGCTAAGGCCATCTCTGATGCCCGTAAGCTTCATCCCCTTATTGATGAGTTCATCCCTACTCTCGAAGGCGAAAATGGGATTTGCTATACTCACCCTCAGAAGCTTCCAGGTACCGTACCATCTTCTAAATTTTTACAAATTCAATGGCTTATTAAATACCAAATCCAAATTTTTAAAACTTATTACGGATATTATTATAAATATAACAAAATTTAAAAATTAAATTAAAATTTTATTACCATGTTTGGTTTTTTTTATTGTTTTCTTCCATTTCAAAACTATTCAAATATTTATTGTGATCTTATCATTTTTAAATTTTAAATTCTCTAATTCTGAATGACAGTGAATTTATATGTTGGATCATGAAAGTTCTACATCGGTTAATTTAGAGAATGATTATGAATTTATAATAAAGATACTCTCTTCAATGGTATTAGAGGTTTGTTGGGGAAGCGGAAAGTTTCGTTTTAACCCACTAAATTTTGAGGTAATAAAAATAAGTAAAAAATGTTTTGATACTTGGGCAGGAGTAAGGAAAGACGGGCAAATCCGGCACTTTTTCCATCGACCATCGAAGGCGTACACAACCGGAACAAGAAAACGCCGCAAAGTCCACACCGACGAGGAAGGCAACGAGACACGTTGGCACAAGACGGGCAAAACCCGACCCGTTTTGGTCGGAGGCGCCGTGAAAGGATTCAAGAAAATCCTTGTACTCTACACCAACTACGGCCGGCAAAGAAAGCCCGAAAAGACCAACTGGGTGATGCACCAATATCACCTCGGCAACAACGAGGAAGAAAAAGACGGTGAAGTAGTTGTCTCCAAGGTCTTTTACCAAACCCAGCCTCGACAGTGCAGCTCCACCACCACTAACAACGCCCTCCTCCAATCAGAAATCAAATTCAAAACCGCCGCCGCCGCCACCAACCACCACCACCACCCAGATCCCTCCCCCGCCACCCTTGTCGATTATTACAACGCCGCCTCCACTAATTTCATTAGTTTCGACCAGCACTCCGAATCCCCCGTACCTCAGTTATTACCCAATTTAGTCCGCACCGGCGACGGTTCTTCCTTCATTCGGTTCCCGCCGCCCGACACAACCACAAGAAAACCCGACAGGAAACTCTGA

mRNA sequence

TTAATATGATGTTGAATTGAAAGGCTGGGATTCATGAATCTTTCTGCTGCTACCAGCTTGGAGTCAAATTGACCCAACCGATCAAGAAAATCCTCTCGAGCACTTAGAGGCTAAGGCCATCTCTGATGCCCGTAAGCTTCATCCCCTTATTGATGAGTTCATCCCTACTCTCGAAGGCGAAAATGGGATTTGCTATACTCACCCTCAGAAGCTTCCAGGAGTAAGGAAAGACGGGCAAATCCGGCACTTTTTCCATCGACCATCGAAGGCGTACACAACCGGAACAAGAAAACGCCGCAAAGTCCACACCGACGAGGAAGGCAACGAGACACGTTGGCACAAGACGGGCAAAACCCGACCCGTTTTGGTCGGAGGCGCCGTGAAAGGATTCAAGAAAATCCTTGTACTCTACACCAACTACGGCCGGCAAAGAAAGCCCGAAAAGACCAACTGGGTGATGCACCAATATCACCTCGGCAACAACGAGGAAGAAAAAGACGGTGAAGTAGTTGTCTCCAAGGTCTTTTACCAAACCCAGCCTCGACAGTGCAGCTCCACCACCACTAACAACGCCCTCCTCCAATCAGAAATCAAATTCAAAACCGCCGCCGCCGCCACCAACCACCACCACCACCCAGATCCCTCCCCCGCCACCCTTGTCGATTATTACAACGCCGCCTCCACTAATTTCATTAGTTTCGACCAGCACTCCGAATCCCCCGTACCTCAGTTATTACCCAATTTAGTCCGCACCGGCGACGGTTCTTCCTTCATTCGGTTCCCGCCGCCCGACACAACCACAAGAAAACCCGACAGGAAACTCTGA

Coding sequence (CDS)

ATGCACCAATATCACCTCGGCAACAACGAGGAAGAAAAAGACGGTGAAGTAGTTGTCTCCAAGGTCTTTTACCAAACCCAGCCTCGACAGTGCAGCTCCACCACCACTAACAACGCCCTCCTCCAATCAGAAATCAAATTCAAAACCGCCGCCGCCGCCACCAACCACCACCACCACCCAGATCCCTCCCCCGCCACCCTTGTCGATTATTACAACGCCGCCTCCACTAATTTCATTAGTTTCGACCAGCACTCCGAATCCCCCGTACCTCAGTTATTACCCAATTTAGTCCGCACCGGCGACGGTTCTTCCTTCATTCGGTTCCCGCCGCCCGACACAACCACAAGAAAACCCGACAGGAAACTCTGA

Protein sequence

MHQYHLGNNEEEKDGEVVVSKVFYQTQPRQCSSTTTNNALLQSEIKFKTAAAATNHHHHPDPSPATLVDYYNAASTNFISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL

Homology

[Close]

BLAST of Carg21519 vs. NCBI nr
Match: XP_022927214.1 (NAC domain-containing protein 73-like [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 4.1e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 63  SPATLVDYYNAASTNFISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL 122
           SPATLVDYYNAASTNFISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL
Sbjct: 248 SPATLVDYYNAASTNFISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL 307

[Close]

BLAST of Carg21519 vs. NCBI nr
Match: XP_023519773.1 (NAC domain-containing protein 73-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.7 bits (317), Expect = 5.3e-26
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 63  SPATLVDYYNAASTNFISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL 122
           SPATLVDYYNAASTNFISFDQHSESP+PQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL
Sbjct: 250 SPATLVDYYNAASTNFISFDQHSESPIPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL 309

[Close]

BLAST of Carg21519 vs. NCBI nr
Match: XP_023001734.1 (NAC domain-containing protein 73-like [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 5.9e-25
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 63  SPATLVDYYNAASTNFISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL 122
           SPATLVDYYNAASTNFISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRK DRKL
Sbjct: 246 SPATLVDYYNAASTNFISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKLDRKL 305

[Close]

BLAST of Carg21519 vs. NCBI nr
Match: XP_023541994.1 (NAC domain-containing protein 73-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.6 bits (187), Expect = 6.3e-11
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 66  TLVDYYNAASTNFISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL 123
           T VDYYNA  +NFISFD +S++P PQLLPNLV +GD SSF+RFPP DTT RK D KL
Sbjct: 243 THVDYYNA--SNFISFDHNSDNP-PQLLPNLVLSGDASSFLRFPPADTTKRKLDMKL 296

[Close]

BLAST of Carg21519 vs. NCBI nr
Match: XP_023541995.1 (NAC domain-containing protein 73-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 76.6 bits (187), Expect = 6.3e-11
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 66  TLVDYYNAASTNFISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL 123
           T VDYYNA  +NFISFD +S++P PQLLPNLV +GD SSF+RFPP DTT RK D KL
Sbjct: 242 THVDYYNA--SNFISFDHNSDNP-PQLLPNLVLSGDASSFLRFPPADTTKRKLDMKL 295

[Close]

BLAST of Carg21519 vs. TrEMBL
Match: tr|A0A0A0LV71|A0A0A0LV71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G076100 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.9e-10
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 71  YNAASTN----FISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL 123
           YN A++N     ISFD ++E  VPQLLPNLV +GDGSSFIRFPP DTT RK +RKL
Sbjct: 255 YNPATSNNTNLIISFDHNTEPEVPQLLPNLVLSGDGSSFIRFPPADTTKRKLERKL 310

[Close]

BLAST of Carg21519 vs. TrEMBL
Match: tr|A0A0H4TGA3|A0A0H4TGA3_MOMCH (NAC domain-containing protein 8 OS=Momordica charantia OX=3673 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.1e-09
Identity = 40/60 (66.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 63  SPATLVDYYNAASTNFISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL 122
           S A LVDYYNAAS NFI+FD           PNLV  GDGSSFIRFPPPDTT RK D KL
Sbjct: 245 SAAGLVDYYNAAS-NFITFD-----------PNLVLNGDGSSFIRFPPPDTTKRKLDTKL 292

[Close]

BLAST of Carg21519 vs. TrEMBL
Match: tr|A0A1S4DWD6|A0A1S4DWD6_CUCME (NAC domain-containing protein 73-like OS=Cucumis melo OX=3656 GN=LOC103486643 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.7e-09
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 79  ISFDQHSESPVPQLLPNLVRTGDGSSFIRFPPPDTTTRKPDRKL 123
           ISFD ++E  VPQLLPNLV +GDGSSFIRFPP DTT RK +RKL
Sbjct: 269 ISFDHNTEPEVPQLLPNLVLSGDGSSFIRFPPADTTKRKLERKL 312

[Close]

BLAST of Carg21519 vs. TrEMBL
Match: tr|A0A059C9B1|A0A059C9B1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E03226 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-04
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 66  TLVDYYNAASTNFIS-FDQ---HSESPVPQLLPNLVRTGDGSSFIRFPP 111
           ++VDYYN ++ NFIS +DQ   + ESP PQL+PNLV  GDGSSFI+F P
Sbjct: 250 SVVDYYNYSNPNFISNYDQVNPNRESP-PQLIPNLVVQGDGSSFIQFTP 297

The following BLAST results are available for this feature:

BLAST of Carg21519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927214.1	4.1e-26	100.00	NAC domain-containing protein 73-like [Cucurbita moschata]	[more]
XP_023519773.1	5.3e-26	98.33	NAC domain-containing protein 73-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001734.1	5.9e-25	98.33	NAC domain-containing protein 73-like [Cucurbita maxima]	[more]
XP_023541994.1	6.3e-11	70.18	NAC domain-containing protein 73-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023541995.1	6.3e-11	70.18	NAC domain-containing protein 73-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg21519 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg21519 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg21519 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV71\|A0A0A0LV71_CUCSA	7.9e-10	66.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G076100 PE=4 SV=1	[more]
tr\|A0A0H4TGA3\|A0A0H4TGA3_MOMCH	5.1e-09	66.67	NAC domain-containing protein 8 OS=Momordica charantia OX=3673 PE=2 SV=1	[more]
tr\|A0A1S4DWD6\|A0A1S4DWD6_CUCME	8.7e-09	75.00	NAC domain-containing protein 73-like OS=Cucumis melo OX=3656 GN=LOC103486643 PE...	[more]
tr\|A0A059C9B1\|A0A059C9B1_EUCGR	2.2e-04	61.22	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_E03226 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21519-RA	Carg21519-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..122
None	No IPR available	PANTHER	PTHR31079:SF20	NAC DOMAIN-CONTAINING PROTEIN 10	coord: 1..109
None	No IPR available	PANTHER	PTHR31079	FAMILY NOT NAMED	coord: 1..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21519	Cla97C03G059250	Watermelon (97103) v2	carwmbB1000
Carg21519	Bhi03G000283	Wax gourd	carwgoB1098

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg21519	Carg14604	Silver-seed gourd	carcarB179

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21519	Watermelon (Charleston Gray)	carwcgB0924
Carg21519	Watermelon (Charleston Gray)	carwcgB0926
Carg21519	Watermelon (97103) v1	carwmB0949
Carg21519	Watermelon (97103) v1	carwmB0950
Carg21519	Wax gourd	carwgoB1101
Carg21519	Silver-seed gourd	carcarB509
Carg21519	Cucumber (Gy14) v2	carcgybB0936
Carg21519	Cucumber (Gy14) v2	carcgybB0937
Carg21519	Cucumber (Gy14) v1	carcgyB1067
Carg21519	Cucumber (Gy14) v1	carcgyB1068
Carg21519	Cucurbita maxima (Rimu)	carcmaB1297
Carg21519	Cucurbita maxima (Rimu)	carcmaB1298
Carg21519	Cucurbita moschata (Rifu)	carcmoB1268
Carg21519	Cucurbita moschata (Rifu)	carcmoB1269
Carg21519	Cucurbita moschata (Rifu)	carcmoB1270
Carg21519	Cucurbita pepo (Zucchini)	carcpeB1312
Carg21519	Cucurbita pepo (Zucchini)	carcpeB1314
Carg21519	Wild cucumber (PI 183967)	carcpiB0986
Carg21519	Wild cucumber (PI 183967)	carcpiB0987
Carg21519	Cucumber (Chinese Long) v2	carcuB0964
Carg21519	Cucumber (Chinese Long) v2	carcuB0963
Carg21519	Cucumber (Chinese Long) v3	carcucB0991
Carg21519	Cucumber (Chinese Long) v3	carcucB0992
Carg21519	Bottle gourd (USVL1VR-Ls)	carlsiB865
Carg21519	Bottle gourd (USVL1VR-Ls)	carlsiB866
Carg21519	Melon (DHL92) v3.5.1	carmeB0930
Carg21519	Melon (DHL92) v3.5.1	carmeB0931
Carg21519	Melon (DHL92) v3.6.1	carmedB0936
Carg21519	Melon (DHL92) v3.6.1	carmedB0937