Carg21320 (gene) Silver-seed gourd

Overview
NameCarg21320
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionE3 ubiquitin-protein ligase rha1b
LocationCucurbita_argyrosperma_scaffold_128 : 372175 .. 372684 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTCTTCTGTTTCGCCATTAACGGCCACAGATGCTATCAAATCCTCCATTTCTTCACCAGAATCCTTCTCCATTTGAAGCTTCTCGCCGCCCGTTTCGGCCTCCTCAAGCCCTCGCCGGAGCACCATGCCGACTCTCCCTTCCAGCCTCCGACCAGTTACCTCTTCCTCACCGACGACCCCTGCCCTTCGCTGGTCACCGTTCCGGCGGCTGATTTGCAGGCCAGGATCAAGAACAGCCTCCCAATCGTCGAGTTTGGGGATTTTGCTGCAAAACAGGGGATTGAATTTGGGGGAAATGACGGAGAAGAAGAGAATCGGATGTGTACGATCTGTTTGAGTGAAATGGAGAGATCGGAGCCGATGAGAGAGCTCTGTAATTGCCGCCATGTCTTCCATCGGGAGTGTTTGGATACGTGGATTGATGAGTTTCAGATTACGTGCCCTGTTTGTAGATCTTTTCTTTTGCCCTCCGGTGACGGCGGTGGGTTTCGATTCCTCCGGTGA

mRNA sequence

ATGGGGTTCTTCTGTTTCGCCATTAACGGCCACAGATGCTATCAAATCCTCCATTTCTTCACCAGAATCCTTCTCCATTTGAAGCTTCTCGCCGCCCGTTTCGGCCTCCTCAAGCCCTCGCCGGAGCACCATGCCGACTCTCCCTTCCAGCCTCCGACCAGTTACCTCTTCCTCACCGACGACCCCTGCCCTTCGCTGGTCACCGTTCCGGCGGCTGATTTGCAGGCCAGGATCAAGAACAGCCTCCCAATCGTCGAGTTTGGGGATTTTGCTGCAAAACAGGGGATTGAATTTGGGGGAAATGACGGAGAAGAAGAGAATCGGATGTGTACGATCTGTTTGAGTGAAATGGAGAGATCGGAGCCGATGAGAGAGCTCTGTAATTGCCGCCATGTCTTCCATCGGGAGTGTTTGGATACGTGGATTGATGAGTTTCAGATTACGTGCCCTGTTTGTAGATCTTTTCTTTTGCCCTCCGGTGACGGCGGTGGGTTTCGATTCCTCCGGTGA

Coding sequence (CDS)

ATGGGGTTCTTCTGTTTCGCCATTAACGGCCACAGATGCTATCAAATCCTCCATTTCTTCACCAGAATCCTTCTCCATTTGAAGCTTCTCGCCGCCCGTTTCGGCCTCCTCAAGCCCTCGCCGGAGCACCATGCCGACTCTCCCTTCCAGCCTCCGACCAGTTACCTCTTCCTCACCGACGACCCCTGCCCTTCGCTGGTCACCGTTCCGGCGGCTGATTTGCAGGCCAGGATCAAGAACAGCCTCCCAATCGTCGAGTTTGGGGATTTTGCTGCAAAACAGGGGATTGAATTTGGGGGAAATGACGGAGAAGAAGAGAATCGGATGTGTACGATCTGTTTGAGTGAAATGGAGAGATCGGAGCCGATGAGAGAGCTCTGTAATTGCCGCCATGTCTTCCATCGGGAGTGTTTGGATACGTGGATTGATGAGTTTCAGATTACGTGCCCTGTTTGTAGATCTTTTCTTTTGCCCTCCGGTGACGGCGGTGGGTTTCGATTCCTCCGGTGA

Protein sequence

MGFFCFAINGHRCYQILHFFTRILLHLKLLAARFGLLKPSPEHHADSPFQPPTSYLFLTDDPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERSEPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLPSGDGGGFRFLR
Homology
[Close]
BLAST of Carg21320 vs. NCBI nr
Match: XP_023520502.1 (RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.2 bits (931), Expect = 4.7e-97
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 

Query: 1   MGFFCFAINGHRCYQILHFFTRILLHLKLLAARFGLLKPSPEHHADSPFQPPTSYLFLTD 60
           MGFFCFAINGHRCYQILHFFTRILLHLKLLAARFGLLKPSPEHHADSPFQPPTSYLFLTD
Sbjct: 1   MGFFCFAINGHRCYQILHFFTRILLHLKLLAARFGLLKPSPEHHADSPFQPPTSYLFLTD 60

Query: 61  DPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERS 120
           DPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERS
Sbjct: 61  DPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERS 120

Query: 121 EPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLPSGDGGGFRFLR 170
           EPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLPSGDGGGFRFLR
Sbjct: 121 EPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLPSGDGGGFRFLR 169

[Close]
BLAST of Carg21320 vs. NCBI nr
Match: XP_022996076.1 (RING-H2 finger protein ATL46-like [Cucurbita maxima])

HSP 1 Score: 239.2 bits (609), Expect = 1.0e-59
Identity = 119/170 (70.00%), Postives = 131/170 (77.06%), Query Frame = 0 

Query: 1   MGFFCFAINGHRCYQILH-FFTRILLHLKLLAARFGLLKPSPEHHADSPFQPPTSYLFLT 60
           MGF  FAIN     QILH  FTRILL  KLLAA FGL+KPSPE  ADSPF+ PTSY+ LT
Sbjct: 1   MGFLHFAINAQTSSQILHQAFTRILLQFKLLAAHFGLIKPSPELVADSPFERPTSYVLLT 60

Query: 61  DDPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMER 120
           +   PSLVTVPA DLQ RIK SLPI+E+GDF  KQG     N  +EENR CTICL EMER
Sbjct: 61  EGRYPSLVTVPAVDLQVRIKTSLPIIEYGDFVEKQGRGSPENKVDEENRKCTICLCEMER 120

Query: 121 SEPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLPSGDGGGFRFLR 170
           SE MRELCNC HVFHR+CLDTWIDEF+ITCPVCRS L P+G+G GF F+R
Sbjct: 121 SETMRELCNCCHVFHRDCLDTWIDEFRITCPVCRSMLFPAGEGDGFPFVR 170

[Close]
BLAST of Carg21320 vs. NCBI nr
Match: XP_023533023.1 (RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.3 bits (573), Expect = 1.5e-55
Identity = 111/154 (72.08%), Postives = 121/154 (78.57%), Query Frame = 0 

Query: 1   MGFFCFAINGHRCYQILHFFTRILLHLKLLAARFGLLKPSPEHHADSPFQPPTSYLFLTD 60
           MGF  FAING R  QILH FTRILL  KLLAA FGL+KPSPEH A+SPF+ PTSY+ LT+
Sbjct: 1   MGFLHFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPEHVAESPFERPTSYVLLTE 60

Query: 61  DPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERS 120
              PSLVTVPA DLQARIK SLPI+E+GDF  KQG        +EENR CTICL EMERS
Sbjct: 61  GRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRGSPEEKVDEENRKCTICLCEMERS 120

Query: 121 EPMRELCNCRHVFHRECLDTWIDEFQITCPVCRS 155
           E MREL NC HVFH +CLDTWIDEF+ITCPVCRS
Sbjct: 121 ETMRELSNCCHVFHPDCLDTWIDEFRITCPVCRS 154

[Close]
BLAST of Carg21320 vs. NCBI nr
Match: XP_022159502.1 (RING-H2 finger protein ATL2-like [Momordica charantia])

HSP 1 Score: 183.0 bits (463), Expect = 8.7e-43
Identity = 96/175 (54.86%), Postives = 108/175 (61.71%), Query Frame = 0 

Query: 1   MGFFCFAINGHRCYQILHFFTRILLHLKLLAARFGLLKPSPE--HHADSPFQPPTSYLFL 60
           MGF  FAINGHRC QILHFFT I   LK L    G+LKP P+    AD     PTSY+F+
Sbjct: 1   MGFLYFAINGHRCSQILHFFTGIFRRLKHLGVYLGVLKPPPQQPEDADDRVDRPTSYVFV 60

Query: 61  TDDPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEF----GGNDGEEENRMCTICL 120
           T+  CPSLVTVPA DLQARIK SLPIVEFGDFAAK  ++F                    
Sbjct: 61  TEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKFWEXXXXXXXXXXXXXXXXXX 120

Query: 121 SEMERSEPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLPSGDGGGFRFLR 170
                         C HVFH+ECLDTWIDEFQITCP+CRS LLP+G+G G R+ R
Sbjct: 121 XXXXXXXXXXXXXXCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR 175

[Close]
BLAST of Carg21320 vs. NCBI nr
Match: OMP02760.1 (Zinc finger, RING-type [Corchorus olitorius])

HSP 1 Score: 125.6 bits (314), Expect = 1.6e-25
Identity = 67/142 (47.18%), Postives = 84/142 (59.15%), Query Frame = 0 

Query: 19  FFTRILLHLKLLAARFGLLKPSPEHHADSPFQPP-TSYLFLTDDPCPSLVTVPAADLQAR 78
           FF     HL       GLLKP      +  F  P    + LTD    SLV VP   + A 
Sbjct: 23  FFREAFTHL-------GLLKPPAAASEEEGFYSPFNGIILLTDSRSGSLVPVPTQLVTAM 82

Query: 79  IKNSLPIVEFGDFAAKQGIEFGGNDGEEEN-RMCTICLSEMERSEPMRELCNCRHVFHRE 138
           IK  +P+VE+G+F  + G E   +D +  N R+CT+CL  ME ++ MRELCNC HVFHRE
Sbjct: 83  IKKKVPVVEYGNFMERFGDEL--DDEQLANCRVCTVCLESMEENDKMRELCNCSHVFHRE 142

Query: 139 CLDTWIDEFQITCPVCRSFLLP 159
           CLDTW+DE Q+TCP+CRS L P
Sbjct: 143 CLDTWVDEGQVTCPLCRSTLYP 155

[Close]
BLAST of Carg21320 vs. TAIR10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-14
Identity = 33/81 (40.74%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 78  IKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERSEPMRELCNCRHVFHREC 137
           I+  LP+++F +           N GE+    C +CL E E  + +R L NCRH+FHR C
Sbjct: 71  IREILPVIKFEELT---------NSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSC 130

Query: 138 LDTWIDEFQITCPVCRSFLLP 159
           LD W+D  Q TCP+CR+  +P
Sbjct: 131 LDRWMDHDQKTCPLCRTPFVP 142

[Close]
BLAST of Carg21320 vs. TAIR10
Match: AT1G63840.1 (RING/U-box superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-13
Identity = 36/99 (36.36%), Postives = 52/99 (52.53%), Query Frame = 0 

Query: 61  DPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERS 120
           DP P+L    +A + A     LP+V F D                E+  C +CL + E  
Sbjct: 54  DPPPTLTKPDSAAILA--GEMLPVVRFSDI------------NRPESECCAVCLYDFEND 113

Query: 121 EPMRELCNCRHVFHRECLDTWIDEF-QITCPVCRSFLLP 159
           + +R L NCRH+FHR CLD W+  + Q+TCP+CR+  +P
Sbjct: 114 DEIRRLTNCRHIFHRGCLDRWMMGYNQMTCPLCRTQFIP 138

[Close]
BLAST of Carg21320 vs. TAIR10
Match: AT3G43430.1 (RING/U-box superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-13
Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 0 

Query: 78  IKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERSEPMRELCNCRHVFHREC 137
           IK SL +  F D   +             N MC +CL ++E  + +REL NC HVFHR+C
Sbjct: 59  IKESLAVSAFRDAVERSPAAI--------NDMCAVCLGDLEDEDEIRELRNCTHVFHRDC 118

Query: 138 LDTWI--------DEFQITCPVCRSFLLPS 160
           +D W+        D+   TCP+CR+ LLPS
Sbjct: 119 IDRWLDYECCGGDDDNHRTCPLCRTPLLPS 140

[Close]
BLAST of Carg21320 vs. TAIR10
Match: AT1G15100.1 (RING-H2 finger A2A)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-11
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 99  GGNDGEEENRMCTICLSEMERSEPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLL 158
           GG  G +    C +CLS+++  E +R+L  CRHVFH++CL+ W+ +F  TCP+CRS L+
Sbjct: 79  GGGGGSD----CVVCLSKLKEGEEVRKL-ECRHVFHKKCLEGWLHQFNFTCPLCRSALV 132

[Close]
BLAST of Carg21320 vs. TAIR10
Match: AT5G41400.1 (RING/U-box superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-11
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 0 

Query: 82  LPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERSEPMRELCNCRHVFHRECLDTW 141
           LP++ F +   + G   G +        C +CL E E  + +R L NC+H+FHR CLD W
Sbjct: 85  LPVIRFSEL-TRPGFGSGSD-------CCAVCLHEFENDDEIRRLTNCQHIFHRSCLDRW 144

Query: 142 IDEF-QITCPVCRS 155
           +  + Q+TCP+CR+
Sbjct: 145 MMGYNQMTCPLCRT 150

[Close]
BLAST of Carg21320 vs. Swiss-Prot
Match: sp|Q9ZT50|RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 0 

Query: 99  GGNDGEEENRMCTICLSEMERSEPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLL 158
           GG  G +    C +CLS+++  E +R+L  CRHVFH++CL+ W+ +F  TCP+CRS L+
Sbjct: 79  GGGGGSD----CVVCLSKLKEGEEVRKL-ECRHVFHKKCLEGWLHQFNFTCPLCRSALV 132

[Close]
BLAST of Carg21320 vs. Swiss-Prot
Match: sp|Q9SUS4|RHA1A_ARATH (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.7e-10
Identity = 36/94 (38.30%), Postives = 49/94 (52.13%), Query Frame = 0 

Query: 67  VTVPAADLQARIKNSL-PIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERSEPMRE 126
           +T  A    A + N L P+V F D            D E+    CT+CLS+ E  + +R+
Sbjct: 54  LTRHALSTSASLANELIPVVRFSDLP---------TDPED---CCTVCLSDFESDDKVRQ 113

Query: 127 LCNCRHVFHRECLDTWIDEF-QITCPVCRSFLLP 159
           L  C HVFH  CLD WI ++ ++ CPVCR   LP
Sbjct: 114 LPKCGHVFHHYCLDRWIVDYNKMKCPVCRHRFLP 135

[Close]
BLAST of Carg21320 vs. Swiss-Prot
Match: sp|Q9ZU51|RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 110 CTICLSEMERSEPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLP 159
           C +CLS+++  E +R+L +CRHVFH++CL+ W+      CP+CRS LLP
Sbjct: 74  CIVCLSKLKTGEEVRKL-DCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121

[Close]
BLAST of Carg21320 vs. Swiss-Prot
Match: sp|Q9SJJ7|ATL57_ARATH (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-09
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 0 

Query: 74  LQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERSEPMRELCNCRHVF 133
           L ++   SLP+  +   AAKQ            N  C ICLS+ E  E ++ + +C HVF
Sbjct: 116 LDSQAVRSLPVYRYTK-AAKQ-----------RNEDCVICLSDFEEGETVKVIPHCGHVF 175

Query: 134 HRECLDTWIDEFQITCPVCRS 155
           H +C+DTW+  + +TCP+CRS
Sbjct: 176 HVDCVDTWLSSY-VTCPLCRS 183

[Close]
BLAST of Carg21320 vs. Swiss-Prot
Match: sp|Q9P7E1|YOF7_SCHPO (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP4H10.07 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-09
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = 0 

Query: 64  PSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGN----DGEEENRMCTICLSEMER 123
           PSL T         + NS+  +E    A+++ +E  G      G +E   C +CLS  E 
Sbjct: 477 PSLFTDSPTYEDMLLLNSIIGIEKPPVASQKDLEKAGGVFPFSGTDER--CLVCLSNFEL 536

Query: 124 SEPMRELCNCRHVFHRECLDTWIDEFQITCPVCRS 155
           ++  R L  C H FHREC+D W+   Q +CP+CR+
Sbjct: 537 NDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRT 569

[Close]
BLAST of Carg21320 vs. TrEMBL
Match: tr|A0A1R3K6P6|A0A1R3K6P6_9ROSI (Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_10837 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 67/142 (47.18%), Postives = 84/142 (59.15%), Query Frame = 0 

Query: 19  FFTRILLHLKLLAARFGLLKPSPEHHADSPFQPP-TSYLFLTDDPCPSLVTVPAADLQAR 78
           FF     HL       GLLKP      +  F  P    + LTD    SLV VP   + A 
Sbjct: 23  FFREAFTHL-------GLLKPPAAASEEEGFYSPFNGIILLTDSRSGSLVPVPTQLVTAM 82

Query: 79  IKNSLPIVEFGDFAAKQGIEFGGNDGEEEN-RMCTICLSEMERSEPMRELCNCRHVFHRE 138
           IK  +P+VE+G+F  + G E   +D +  N R+CT+CL  ME ++ MRELCNC HVFHRE
Sbjct: 83  IKKKVPVVEYGNFMERFGDEL--DDEQLANCRVCTVCLESMEENDKMRELCNCSHVFHRE 142

Query: 139 CLDTWIDEFQITCPVCRSFLLP 159
           CLDTW+DE Q+TCP+CRS L P
Sbjct: 143 CLDTWVDEGQVTCPLCRSTLYP 155

[Close]
BLAST of Carg21320 vs. TrEMBL
Match: tr|A0A103XJ52|A0A103XJ52_CYNCS (Zinc finger, RING-CH-type OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_006237 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.4e-25
Identity = 68/161 (42.24%), Postives = 92/161 (57.14%), Query Frame = 0 

Query: 1   MGFFCFAINGHRCYQILHF---FTRILLHLKLLAARFGLLKPSPEHHADSPFQPPTSYLF 60
           MGFF  AI   +   I  F    +R++  L    +  GL K  P+   D       +Y+ 
Sbjct: 1   MGFFYLAIKIPQAITITIFANIASRLVSLLLSALSHLGLFKSPPD--PDDYTSTAGNYVL 60

Query: 61  LTDDPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEM 120
           + D   PSL+ VP   + A IKN +PI  + DFAA+    FGG     EN +C++CL  +
Sbjct: 61  ILDGSSPSLLPVPVHVVTASIKNKVPITPYSDFAAR----FGG----AENTVCSVCLDSV 120

Query: 121 ERSEPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLP 159
              +P+REL NCRHVFH+ECLD W+DE Q+TCP+CRS LLP
Sbjct: 121 HADDPIRELRNCRHVFHKECLDRWVDEGQVTCPLCRSMLLP 151

[Close]
BLAST of Carg21320 vs. TrEMBL
Match: tr|A0A1S4C692|A0A1S4C692_TOBAC (RING-H2 zinc finger protein RHA4a-like OS=Nicotiana tabacum OX=4097 GN=LOC107815543 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 67/163 (41.10%), Postives = 88/163 (53.99%), Query Frame = 0 

Query: 1   MGFFCFAINGHRCYQILHFFTRILLHLKLLA----ARFGLLKPSPE-HHADSPFQPPTSY 60
           MGF   AI   + +    F   +  HLK +      R GL KP PE   ADS    P SY
Sbjct: 1   MGFLFHAIELPK-FMTAAFLVSVWCHLKCMVIVALTRLGLYKPPPEDDDADSNSYNPNSY 60

Query: 61  LFLTDDPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLS 120
           + L D  CPSLVTVP     A +K  +P++ + D+   +        G E  + C+ICL 
Sbjct: 61  ILLLDGTCPSLVTVPIEVATAAVKLKVPVLLYRDYLLLR------RRGNELVKGCSICLE 120

Query: 121 EMERSEPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLP 159
            ME  + +REL  C HVFHR CLDTW+++  +TCP+CRS LLP
Sbjct: 121 SMELEDEVRELITCTHVFHRGCLDTWVNDGHVTCPLCRSMLLP 156

[Close]
BLAST of Carg21320 vs. TrEMBL
Match: tr|A0A1U7US48|A0A1U7US48_NICSY (RING-H2 zinc finger protein RHA4a-like OS=Nicotiana sylvestris OX=4096 GN=LOC104211535 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.0e-23
Identity = 67/163 (41.10%), Postives = 88/163 (53.99%), Query Frame = 0 

Query: 1   MGFFCFAINGHRCYQILHFFTRILLHLKLLA----ARFGLLKPSPE-HHADSPFQPPTSY 60
           MGF   AI   + +    F   +  HLK +      R GL KP PE   ADS    P SY
Sbjct: 1   MGFLFHAIELPK-FMTAAFLVSVWCHLKCMVIVALTRLGLYKPPPEDDDADSNSYNPNSY 60

Query: 61  LFLTDDPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLS 120
           + L D  CPSLVTVP     A +K  +P++ + D+   +        G E  + C+ICL 
Sbjct: 61  ILLLDGTCPSLVTVPIEVATAAVKLKVPVLLYRDYLLLR------RRGNELVKGCSICLE 120

Query: 121 EMERSEPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLP 159
            ME  + +REL  C HVFHR CLDTW+++  +TCP+CRS LLP
Sbjct: 121 SMELEDEVRELITCTHVFHRGCLDTWVNDGHVTCPLCRSMLLP 156

[Close]
BLAST of Carg21320 vs. TrEMBL
Match: tr|A0A061G3Q3|A0A061G3Q3_THECC (Brassinosteroid-responsive RING-H2, putative OS=Theobroma cacao OX=3641 GN=TCM_015600 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23
Identity = 63/154 (40.91%), Postives = 88/154 (57.14%), Query Frame = 0 

Query: 12  RCYQILHFFTRILLHLKLL----AARFGLLKPSPEHHADSPFQPPT---SYLFLTDDPCP 71
           +C     F   ++ + K L        GLLKP PE   D  +   T   +Y+ L D    
Sbjct: 5   KCIAPTIFLLNLVNYFKFLFKEAFTHLGLLKPQPELEED--YYSATYGNAYVLLMDGRSG 64

Query: 72  SLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERSEPMR 131
           SLV VP   + A IK +LP++E+G F  +    FG ++  E   +CT+CL  ME+S+ +R
Sbjct: 65  SLVPVPIQVVTAMIKKNLPVLEYGTFIGR----FGDDEQVENKTVCTVCLDSMEKSDEIR 124

Query: 132 ELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLP 159
            LC C HVFH+ECLDTW++E Q+TCP+CRS L P
Sbjct: 125 VLCKCCHVFHKECLDTWVNEGQVTCPLCRSTLYP 152

The following BLAST results are available for this feature:
BLAST of Carg21320 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023520502.14.7e-97100.00RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo][more]
XP_022996076.11.0e-5970.00RING-H2 finger protein ATL46-like [Cucurbita maxima][more]
XP_023533023.11.5e-5572.08RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo][more]
XP_022159502.18.7e-4354.86RING-H2 finger protein ATL2-like [Momordica charantia][more]
OMP02760.11.6e-2547.18Zinc finger, RING-type [Corchorus olitorius][more]
BLAST of Carg21320 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61460.12.1e-1440.74brassinosteroid-responsive RING-H2[more]
AT1G63840.13.9e-1336.36RING/U-box superfamily protein[more]
AT3G43430.15.1e-1338.89RING/U-box superfamily protein[more]
AT1G15100.11.6e-1145.76RING-H2 finger A2A[more]
AT5G41400.13.7e-1137.84RING/U-box superfamily protein[more]
BLAST of Carg21320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZT50|RHA2A_ARATH3.0e-1045.76E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ... [more]
sp|Q9SUS4|RHA1A_ARATH8.7e-1038.30Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH... [more]
sp|Q9ZU51|RHA2B_ARATH1.1e-0948.98E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ... [more]
sp|Q9SJJ7|ATL57_ARATH1.9e-0938.27RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1[more]
sp|Q9P7E1|YOF7_SCHPO2.5e-0934.74Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strai... [more]
BLAST of Carg21320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1R3K6P6|A0A1R3K6P6_9ROSI1.1e-2547.18Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_10837 PE=4 SV=1[more]
tr|A0A103XJ52|A0A103XJ52_CYNCS5.4e-2542.24Zinc finger, RING-CH-type OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_0... [more]
tr|A0A1S4C692|A0A1S4C692_TOBAC1.0e-2341.10RING-H2 zinc finger protein RHA4a-like OS=Nicotiana tabacum OX=4097 GN=LOC107815... [more]
tr|A0A1U7US48|A0A1U7US48_NICSY1.0e-2341.10RING-H2 zinc finger protein RHA4a-like OS=Nicotiana sylvestris OX=4096 GN=LOC104... [more]
tr|A0A061G3Q3|A0A061G3Q3_THECC1.3e-2340.91Brassinosteroid-responsive RING-H2, putative OS=Theobroma cacao OX=3641 GN=TCM_0... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR019786Zinc_finger_PHD-type_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
IPR011016Znf_RING-CH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21320-RACarg21320-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 109..153
e-value: 1.1E-4
score: 24.1
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 110..152
e-value: 3.4E-5
score: 33.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 109..153
e-value: 1.2E-11
score: 44.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 110..153
score: 12.755
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 89..157
e-value: 1.1E-16
score: 61.8
NoneNo IPR availablePANTHERPTHR14155:SF283SUBFAMILY NOT NAMEDcoord: 95..158
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 95..158
NoneNo IPR availableCDDcd16448RING-H2coord: 110..153
e-value: 7.91588E-11
score: 53.2247
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 105..158
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 110..152