Carg21256 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21256
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING finger protein
Location	Cucurbita_argyrosperma_scaffold_149 : 493879 .. 494160 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTTTGTCTCCTACATTACAGGAACACGAGGTCGGAGTCCTGCCCGTTTTGTCGTGGCAGCTTGAAGAGAGTCAACTCGGAGGACTTATGGGTGCTCACTTGTAGTGATGATGTGGTTGATGCCGAAACCGTTTCGAAGGAGGACACGTTGCGCTTCCATCGCTATATAAACAGCTTGCCAAAAGACTATCCGGACGCGCTGTTCGTAGTATATTCTGAATATCTATTCTAGGTTCGAGTAAAGTGTATAGAGGGAAATCCCGACTCGACATGTAAA

mRNA sequence

ATGCTTGTTTGTCTCCTACATTACAGGAACACGAGGTCGGAGTCCTGCCCGTTTTGTCGTGGCAGCTTGAAGAGAGTCAACTCGGAGGACTTATGGGTGCTCACTTGTAGTGATGATGTGGTTGATGCCGAAACCGTTTCGAAGGAGGACACGTTGCGCTTCCATCGCTATATAAACAGCTTGCCAAAAGACTATCCGGACGCGCTGTTCGTAGTTCGAGTAAAGTGTATAGAGGGAAATCCCGACTCGACATGTAAA

Coding sequence (CDS)

ATGCTTGTTTGTCTCCTACATTACAGGAACACGAGGTCGGAGTCCTGCCCGTTTTGTCGTGGCAGCTTGAAGAGAGTCAACTCGGAGGACTTATGGGTGCTCACTTGTAGTGATGATGTGGTTGATGCCGAAACCGTTTCGAAGGAGGACACGTTGCGCTTCCATCGCTATATAAACAGCTTGCCAAAAGACTATCCGGACGCGCTGTTCGTAGTTCGAGTAAAGTGTATAGAGGGAAATCCCGACTCGACATGTAAA

Protein sequence

MLVCLLHYRNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVVRVKCIEGNPDSTCK

Homology

[Close]

BLAST of Carg21256 vs. NCBI nr
Match: XP_022945193.1 (RING-H2 finger protein ATL47-like [Cucurbita moschata])

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS
Sbjct: 176 MCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 235

Query: 63  LPKDYPDALFVV 73
           LPKDYPDALFVV
Sbjct: 236 LPKDYPDALFVV 247

[Close]

BLAST of Carg21256 vs. NCBI nr
Match: XP_022967134.1 (RING-H2 finger protein ATL47 [Cucurbita maxima])

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS
Sbjct: 176 MCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 235

Query: 63  LPKDYPDALFVV 73
           LPKDYPDALFVV
Sbjct: 236 LPKDYPDALFVV 247

[Close]

BLAST of Carg21256 vs. NCBI nr
Match: XP_023542538.1 (RING-H2 finger protein ATL47-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS
Sbjct: 177 MCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 236

Query: 63  LPKDYPDALFVV 73
           LPKDYPDALFVV
Sbjct: 237 LPKDYPDALFVV 248

[Close]

BLAST of Carg21256 vs. NCBI nr
Match: XP_022151983.1 (putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Momordica charantia] >XP_022151984.1 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Momordica charantia])

HSP 1 Score: 133.3 bits (334), Expect = 4.0e-28
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTC+DDVVDAET SKED LRFHRYINS
Sbjct: 176 MCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCNDDVVDAETASKEDMLRFHRYINS 235

Query: 63  LPKDYPDALFVV 73
           LPKDYPDALFVV
Sbjct: 236 LPKDYPDALFVV 247

[Close]

BLAST of Carg21256 vs. NCBI nr
Match: XP_004135295.1 (PREDICTED: E3 ubiquitin-protein ligase RNF8-B-like [Cucumis sativus] >KGN51710.1 hypothetical protein Csa_5G591750 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 6.9e-28
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKED L+FHRYINS
Sbjct: 176 MCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDTETVSKEDMLQFHRYINS 235

Query: 63  LPKDYPDALFVV 73
           LPKDYPDALF+V
Sbjct: 236 LPKDYPDALFIV 247

[Close]

BLAST of Carg21256 vs. TAIR10
Match: AT1G24440.1 (RING/U-box superfamily protein)

HSP 1 Score: 116.3 bits (290), Expect = 9.2e-27
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  NT+SESCPFCRGS+KRVNSEDLWVLTC +DVVD ETV+KED LRF+ +INS
Sbjct: 174 MCIKCYRNWNTKSESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINS 233

Query: 63  LPKDYPDALFVV 73
           LPKDYP+A F+V
Sbjct: 234 LPKDYPEAAFLV 245

[Close]

BLAST of Carg21256 vs. TAIR10
Match: AT1G13195.1 (RING/U-box superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 9.6e-24
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  N +S+SCPFCRGS+KRVNSEDLWVL   +DVVD  T S+ED  RF+ YINS
Sbjct: 181 MCIKCYRNWNLKSQSCPFCRGSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINS 240

Query: 63  LPKDYPDALFVV 73
           LPKDYP+ALFVV
Sbjct: 241 LPKDYPEALFVV 252

[Close]

BLAST of Carg21256 vs. TAIR10
Match: AT5G01520.1 (RING/U-box superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-14
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 3   VCLLHYRN--TRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YRN   RS+SCPFCRGSLKRVNS DLW+ TCS ++ D   + KE+  R   YI+ 
Sbjct: 165 MCINCYRNWRARSQSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDK 224

[Close]

BLAST of Carg21256 vs. TAIR10
Match: AT3G47160.2 (RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 7.6e-13
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  + RSESCPFCR SLKRVNS DLW+L    D V+  T+ +E+  R   YI  
Sbjct: 178 LCIKCYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEK 237

Query: 63  LPKDYPDALF 71
           LP   PD +F
Sbjct: 238 LPLVVPDQVF 247

[Close]

BLAST of Carg21256 vs. TAIR10
Match: AT5G58787.1 (RING/U-box superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-11
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 3   VCLLHYRN--TRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR+   RS+SCPFCR SLKRV+S DLW+    +D V+   +++E+  R   YI  
Sbjct: 163 LCIKCYRDWRGRSQSCPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEK 222

Query: 63  LPKDYPDALF 71
           LP   PD ++
Sbjct: 223 LPLVVPDQVY 232

[Close]

BLAST of Carg21256 vs. Swiss-Prot
Match: sp|Q9M022|AIRP2_ARATH (E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.5e-13
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 3   VCLLHYRN--TRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YRN   RS+SCPFCRGSLKRVNS DLW+ TCS ++ D   + KE+  R   YI+ 
Sbjct: 165 MCINCYRNWRARSQSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDK 224

[Close]

BLAST of Carg21256 vs. TrEMBL
Match: tr|A0A1S3BE96|A0A1S3BE96_CUCME (E3 ubiquitin-protein ligase RNF8-B OS=Cucumis melo OX=3656 GN=LOC103488929 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.5e-28
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKED L+FHRYINS
Sbjct: 176 MCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDTETVSKEDMLQFHRYINS 235

Query: 63  LPKDYPDALFVV 73
           LPKDYPDALF+V
Sbjct: 236 LPKDYPDALFIV 247

[Close]

BLAST of Carg21256 vs. TrEMBL
Match: tr|A0A0A0KPZ5|A0A0A0KPZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G591750 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.5e-28
Identity = 62/72 (86.11%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKED L+FHRYINS
Sbjct: 176 MCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDTETVSKEDMLQFHRYINS 235

Query: 63  LPKDYPDALFVV 73
           LPKDYPDALF+V
Sbjct: 236 LPKDYPDALFIV 247

[Close]

BLAST of Carg21256 vs. TrEMBL
Match: tr|A0A2P4KX55|A0A2P4KX55_QUESU (Ring finger protein 141 OS=Quercus suber OX=58331 GN=CFP56_44693 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-26
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTC+DDVVD ETVSKED LRF+ YINS
Sbjct: 177 MCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCNDDVVDPETVSKEDVLRFYLYINS 236

Query: 63  LPKDYPDALFVV 73
           LPKDYPD+LF+V
Sbjct: 237 LPKDYPDSLFLV 248

[Close]

BLAST of Carg21256 vs. TrEMBL
Match: tr|A0A2N9FQI7|A0A2N9FQI7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17242 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.6e-26
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTC+DDVVD ETVSKED L+F+ YINS
Sbjct: 61  MCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCNDDVVDPETVSKEDVLQFYLYINS 120

Query: 63  LPKDYPDALFVV 73
           LPKDYPDALF+V
Sbjct: 121 LPKDYPDALFLV 132

[Close]

BLAST of Carg21256 vs. TrEMBL
Match: tr|A0A2N9HG81|A0A2N9HG81_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38827 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.6e-26
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 3   VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINS 62
           +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTC+DDVVD ETVSKED L+F+ YINS
Sbjct: 242 MCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCNDDVVDPETVSKEDVLQFYLYINS 301

Query: 63  LPKDYPDALFVV 73
           LPKDYPDALF+V
Sbjct: 302 LPKDYPDALFLV 313

The following BLAST results are available for this feature:

BLAST of Carg21256 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945193.1	1.3e-29	91.67	RING-H2 finger protein ATL47-like [Cucurbita moschata]	[more]
XP_022967134.1	1.3e-29	91.67	RING-H2 finger protein ATL47 [Cucurbita maxima]	[more]
XP_023542538.1	1.3e-29	91.67	RING-H2 finger protein ATL47-like [Cucurbita pepo subsp. pepo]	[more]
XP_022151983.1	4.0e-28	87.50	putative SWI/SNF-related matrix-associated actin-dependent regulator of chromati...	[more]
XP_004135295.1	6.9e-28	86.11	PREDICTED: E3 ubiquitin-protein ligase RNF8-B-like [Cucumis sativus] >KGN51710.1...	[more]

BLAST of Carg21256 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G24440.1	9.2e-27	73.61	RING/U-box superfamily protein	[more]
AT1G13195.1	9.6e-24	68.06	RING/U-box superfamily protein	[more]
AT5G01520.1	5.3e-14	54.84	RING/U-box superfamily protein	[more]
AT3G47160.2	7.6e-13	50.00	RING/U-box superfamily protein	[more]
AT5G58787.1	3.2e-11	42.86	RING/U-box superfamily protein	[more]

BLAST of Carg21256 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M022\|AIRP2_ARATH	9.5e-13	54.84	E3 ubiquitin-protein ligase AIRP2 OS=Arabidopsis thaliana OX=3702 GN=AIRP2 PE=1 ...	[more]

BLAST of Carg21256 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BE96\|A0A1S3BE96_CUCME	4.5e-28	86.11	E3 ubiquitin-protein ligase RNF8-B OS=Cucumis melo OX=3656 GN=LOC103488929 PE=4 ...	[more]
tr\|A0A0A0KPZ5\|A0A0A0KPZ5_CUCSA	4.5e-28	86.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G591750 PE=4 SV=1	[more]
tr\|A0A2P4KX55\|A0A2P4KX55_QUESU	4.3e-26	81.94	Ring finger protein 141 OS=Quercus suber OX=58331 GN=CFP56_44693 PE=4 SV=1	[more]
tr\|A0A2N9FQI7\|A0A2N9FQI7_FAGSY	5.6e-26	81.94	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17242 PE=4 SV=1	[more]
tr\|A0A2N9HG81\|A0A2N9HG81_FAGSY	5.6e-26	81.94	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38827 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21256-RA	Carg21256-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15315	RING FINGER PROTEIN 41, 151	coord: 3..73
None	No IPR available	PANTHER	PTHR15315:SF35	F21J9.10	coord: 3..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21256	Lsi04G006410	Bottle gourd (USVL1VR-Ls)	carlsiB629

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21256	Wax gourd	carwgoB0811
Carg21256	Silver-seed gourd	carcarB285
Carg21256	Cucumber (Gy14) v2	carcgybB0690
Carg21256	Cucumber (Gy14) v1	carcgyB0772
Carg21256	Cucurbita maxima (Rimu)	carcmaB0971
Carg21256	Cucurbita maxima (Rimu)	carcmaB0970
Carg21256	Cucurbita moschata (Rifu)	carcmoB0943
Carg21256	Cucurbita moschata (Rifu)	carcmoB0945
Carg21256	Cucurbita pepo (Zucchini)	carcpeB0970
Carg21256	Cucurbita pepo (Zucchini)	carcpeB0971
Carg21256	Wild cucumber (PI 183967)	carcpiB0727
Carg21256	Cucumber (Chinese Long) v2	carcuB0713
Carg21256	Cucumber (Chinese Long) v3	carcucB0730
Carg21256	Melon (DHL92) v3.5.1	carmeB0689
Carg21256	Melon (DHL92) v3.6.1	carmedB0702
Carg21256	Watermelon (Charleston Gray)	carwcgB0665
Carg21256	Watermelon (97103) v1	carwmB0686
Carg21256	Watermelon (97103) v2	carwmbB0717