Carg21173 (gene) Silver-seed gourd

Overview
NameCarg21173
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_207 : 394638 .. 397392 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGCTTCTCTGTCTCATCGGCACTCATAACCACCGTCGGAGAAGATGCTACGGGTCGCCTCATTATTCTATCCTCCATTGGCTTTATGCTTATCCGATTCCACGAACGTATCTTCTTGTCCGACTCCTTAATGCACGGCCACTGCCCGGCCGGGAAGACTCTCCTCGGAGTTCTAATCTCAAGCGGCTGACGTCTCTTGTGGTCCTACTCATTCGCCGGAAGGAGCTCCACAAGGTTTTACTTGTTTATGCTGTATATTTACTCTAATTTTTACTCAACTCGACTGCTCGTTTTTGGAGTGTGAGGAAAAACACTAAGGACTTCGTTTTTTTGCTCATGTTATTGCTTGCGGTTGTATGCGAAGTTTTAATATCATGCCGCGTCTGGACTAAGGGGAATCTGTTAGTTTTCTTTCTCCTCTTCATTCTCAGTGTTGGCCGCGTCTGGACTAAGGGGAATCTGTTAGTTTTCTTTCTCCACTTCATTCTCAGTGTTGGTAGCGTATGCGTTCTTATTAAATAAAATTATATGGTTTCGTGTAACGGATTTGTGTGGAAAAATATTTCGACGTCAGAAACTATGAGTGACGATTTCTATTGAAGTATATCCTTCTCGGAAATTGCATCAGTTTTTGGGTTTGAGTTTCGTATTGTTCTTTAATTTCTCAGTTATTTGAGATGATTGAAATTGCGAAGAGACTTTATGGAAAGTTGAATACAATTTTTATGAATGCTGTCCAGGAAGCCTGTGCTCACTGCGGTGATATTGATTTAGCTCCGAAGAATTCCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGCACGCTATTGAAGGTAATAAATTAAAGCATTCTAAGTTTTAGATTCCTTGATGCATTGTCGTTGAGTCATGTGGGAAATCCGTCATTGTGACAGTTGTATGGGAGAGTCGTGATTAGTTCTTGTTCCAGTTAACTCTCAGTCTTTTCTCTGCCAGGGCTAGGGAGAAGCTAGAAAAGTTGACTAAGCATTTTGATTATTTGAATCTGTGGAAGAAGATACTGCTATTGGAGGTCTAGCACTGTCGGCACCACTTATTATGGTCTTCTAAATGCTTTGACTGAACCAGGCCAGTTTCTACAAGAAGTCATTTCTTAAGCTGCTTACTCAGTGGTTACTGTACTTTATCTATGTTGGATGATAAAAGTCCCACATTGACTAATTCAGGGAATGATCATGAATTTCTAAATAAAGAATACTCTCCCTATTGGTATGAGGCCAAAGCAAAGCCATGAAAGCCTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCCTGTTCGTCTAACAATCTGCAGTACAAAGCTCATAATAATGTCTCCAGTCCTGTAAGTTCAAATGCTTTATGGCAGCCACATTTCAATTGGAACAATTAAGCGTTGCAGTTAAATTTGGTTGATAGTGTATTAGACTTATTTTCAGTTGATAGTGGTATTAAAGAGATTATGGTTGTGTATTTTAGTTTCTAGTTAGTGTTTATTTGGCTCGATAGATTTGGAAGCTTTTCTATGAATGGTAGTATTGATGTGCAATCTCTTCAACGGAGAGAAGTTTCGGGCTTCTTTATGGTCTTTGTAGAGGAAAATATAATCTCAAATGTTGGATGATAAAAGTTCCACGTTGGTTAATTTAGGGAATGATCATGAGTTTATAAACAAAGAATGCTCTCTCTATTGGTATAAAGCCTTTTGGGGAAGCTCAAAGCAAAGCCATGAGAGCTTATACTCAAAGTGGATAATATCATGCCACTATGGAGAGACGTGTTCGTCTAACATTAAACGAGTTACTACCTATTTGATACTGTTTATATCCATCAAGAGCGATGCATATACCTTTGTCGTTTTACCAGTCTGACACTGTATATTTCTTCTTTAGCTACAATGGATGCATATAAGCTTCCAAATTAATTACGTTCTCATAGCCATAGGAGGATATTTACTCCCCACTGCTCATTCTGGTCTGACCCACAATAATTCATGCATGTTCTGAAATTTCCTTGAGTGGCTCATGCTCCTGTGGGTACCTAGAGCTACAAGTTTGTGCACCTTGATTCACTTTTCAGACATAACCCTTCCATTCATCAATTGTAATACATTTTTTCTTTAGGGTTTTGGGATTCTGAAAGATGTCCATGTAGTTCACAAGATTGTGCTGGAAATGAAGTCTTGTCATGATTTCTTGATTGATTGAACAGCATACACTGAAATGATTGATGCTTTGCTCAACTGTGGCTGTATAGACGGTACGTCATGTTTATACATAACTAGTAAGCGGCAGGATAGGGATTGAATTGTACAGATAGATAATTAGTTTATGCAAATAGACAAATGTCTTTAGTTGAACTGTACAGGATAGAGCAAATGTCTTTATGCATAGCTCTTCTTGGTTTTTGGTTGGTGTGGGGTATAGTTTACATGAACTTTTGAGCATTTTGTCTATTTGTTTTCGTACCTTTAAAATGTTCCAATTGGGTTAACATGTCAAGCTAATTAGTTTATTCTAACTGTTAGTAGCATGATGCCAAATTCTACCCAAATATCCTAGTGAAGCGACTTTTGAGTATTTGATGATAGAAATGGAGCTTGTTTTGAAGGCAACAATCAACAAGTTGCATGATAAACTTGGCCAGATATTTGTTAATGTTCTTACTGAAGGATGAAGCTAAATTTGAACAGGATTTCAAGGCCTGA

mRNA sequence

ATGGTTAGCTTCTCTGTCTCATCGGCACTCATAACCACCGTCGGAGAAGATGCTACGGGTCGCCTCATTATTCTATCCTCCATTGGCTTTATGCTTATCCGATTCCACGAACGTATCTTCTTGTCCGACTCCTTAATGCACGGCCACTGCCCGGCCGGGAAGACTCTCCTCGGAGAAGCCTGTGCTCACTGCGGTGATATTGATTTAGCTCCGAAGAATTCCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGCACGCTATTGAAGGGTTTTGGGATTCTGAAAGATGTCCATGATGAAGCTAAATTTGAACAGGATTTCAAGGCCTGA

Coding sequence (CDS)

ATGGTTAGCTTCTCTGTCTCATCGGCACTCATAACCACCGTCGGAGAAGATGCTACGGGTCGCCTCATTATTCTATCCTCCATTGGCTTTATGCTTATCCGATTCCACGAACGTATCTTCTTGTCCGACTCCTTAATGCACGGCCACTGCCCGGCCGGGAAGACTCTCCTCGGAGAAGCCTGTGCTCACTGCGGTGATATTGATTTAGCTCCGAAGAATTCCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGCACGCTATTGAAGGGTTTTGGGATTCTGAAAGATGTCCATGATGAAGCTAAATTTGAACAGGATTTCAAGGCCTGA

Protein sequence

MVSFSVSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTLLGEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEAKFEQDFKA
Homology
[Close]
BLAST of Carg21173 vs. NCBI nr
Match: XP_011652532.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g10690 [Cucumis sativus] >KGN60172.1 hypothetical protein Csa_3G881850 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. NCBI nr
Match: XP_022936929.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. NCBI nr
Match: XP_022936928.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X1 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. NCBI nr
Match: XP_023535823.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. NCBI nr
Match: XP_023535822.1 (pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. TAIR10
Match: AT5G10690.1 (pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCG+IDLA +   EM++P   GVD++SY T+LKG G  + + DEA
Sbjct: 85  EACVHCGNIDLALRMFHEMAEPGGIGVDSISYATILKGLGKARRI-DEA 132

[Close]
BLAST of Carg21173 vs. Swiss-Prot
Match: sp|Q8VYD6|PP374_ARATH (Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana OX=3702 GN=CBSPPR1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-07
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCG+IDLA +   EM++P   GVD++SY T+LKG G  + + DEA
Sbjct: 85  EACVHCGNIDLALRMFHEMAEPGGIGVDSISYATILKGLGKARRI-DEA 132

[Close]
BLAST of Carg21173 vs. TrEMBL
Match: tr|A0A0A0LHF8|A0A0A0LHF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881850 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-10
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDNCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. TrEMBL
Match: tr|A0A1S4E685|A0A1S4E685_CUCME (pentatricopeptide repeat-containing protein At5g10690 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503754 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP++CG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDSCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. TrEMBL
Match: tr|A0A1S3CQY3|A0A1S3CQY3_CUCME (pentatricopeptide repeat-containing protein At5g10690 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103503754 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP++CG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDSCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. TrEMBL
Match: tr|A0A1S3CS90|A0A1S3CS90_CUCME (pentatricopeptide repeat-containing protein At5g10690 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103503754 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP++CG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDSCGLDNVSYGTLLKGLGEARKI-DEA 136

[Close]
BLAST of Carg21173 vs. TrEMBL
Match: tr|A0A1S3CQX2|A0A1S3CQX2_CUCME (pentatricopeptide repeat-containing protein At5g10690 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103503754 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0 

Query: 59  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA 108
           EAC HCGDIDLA +   EMSKP++CG+DNVSYGTLLKG G  + + DEA
Sbjct: 89  EACVHCGDIDLALRTFNEMSKPDSCGLDNVSYGTLLKGLGEARKI-DEA 136

The following BLAST results are available for this feature:
BLAST of Carg21173 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652532.15.1e-1069.39PREDICTED: pentatricopeptide repeat-containing protein At5g10690 [Cucumis sativu... [more]
XP_022936929.15.1e-1069.39pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Cucurbita mosc... [more]
XP_022936928.15.1e-1069.39pentatricopeptide repeat-containing protein At5g10690 isoform X1 [Cucurbita mosc... [more]
XP_023535823.15.1e-1069.39pentatricopeptide repeat-containing protein At5g10690 isoform X3 [Cucurbita pepo... [more]
XP_023535822.15.1e-1069.39pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Cucurbita pepo... [more]
BLAST of Carg21173 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G10690.11.5e-0853.06pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protei... [more]
BLAST of Carg21173 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8VYD6|PP374_ARATH2.7e-0753.06Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg21173 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LHF8|A0A0A0LHF8_CUCSA3.3e-1069.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881850 PE=4 SV=1[more]
tr|A0A1S4E685|A0A1S4E685_CUCME1.3e-0967.35pentatricopeptide repeat-containing protein At5g10690 isoform X2 OS=Cucumis melo... [more]
tr|A0A1S3CQY3|A0A1S3CQY3_CUCME1.3e-0967.35pentatricopeptide repeat-containing protein At5g10690 isoform X5 OS=Cucumis melo... [more]
tr|A0A1S3CS90|A0A1S3CS90_CUCME1.3e-0967.35pentatricopeptide repeat-containing protein At5g10690 isoform X3 OS=Cucumis melo... [more]
tr|A0A1S3CQX2|A0A1S3CQX2_CUCME1.3e-0967.35pentatricopeptide repeat-containing protein At5g10690 isoform X4 OS=Cucumis melo... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21173-RACarg21173-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg21173CmaCh01G015730Cucurbita maxima (Rimu)carcmaB0771
Carg21173CmoCh09G005180Cucurbita moschata (Rifu)carcmoB0746
Carg21173CmoCh01G016180Cucurbita moschata (Rifu)carcmoB0749
Carg21173Lsi04G021960Bottle gourd (USVL1VR-Ls)carlsiB499
Carg21173Cp4.1LG02g04710Cucurbita pepo (Zucchini)carcpeB0780
Carg21173Cla97C05G098840Watermelon (97103) v2carwmbB0577
Carg21173Bhi09G002012Wax gourdcarwgoB0662
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg21173Carg02938Silver-seed gourdcarcarB511
The following block(s) are covering this gene:
GeneOrganismBlock
Carg21173Melon (DHL92) v3.6.1carmedB0562
Carg21173Melon (DHL92) v3.6.1carmedB0564
Carg21173Watermelon (Charleston Gray)carwcgB0539
Carg21173Watermelon (97103) v1carwmB0547
Carg21173Watermelon (97103) v2carwmbB0580
Carg21173Wax gourdcarwgoB0661
Carg21173Silver-seed gourdcarcarB065
Carg21173Silver-seed gourdcarcarB513
Carg21173Cucumber (Gy14) v2carcgybB0557
Carg21173Cucumber (Gy14) v2carcgybB0558
Carg21173Cucumber (Gy14) v1carcgyB0628
Carg21173Cucumber (Gy14) v1carcgyB0630
Carg21173Cucurbita maxima (Rimu)carcmaB0767
Carg21173Cucurbita maxima (Rimu)carcmaB0770
Carg21173Cucurbita maxima (Rimu)carcmaB0772
Carg21173Cucurbita moschata (Rifu)carcmoB0748
Carg21173Cucurbita moschata (Rifu)carcmoB0750
Carg21173Cucurbita pepo (Zucchini)carcpeB0779
Carg21173Cucurbita pepo (Zucchini)carcpeB0782
Carg21173Cucurbita pepo (Zucchini)carcpeB0784
Carg21173Wild cucumber (PI 183967)carcpiB0587
Carg21173Wild cucumber (PI 183967)carcpiB0588
Carg21173Cucumber (Chinese Long) v2carcuB0581
Carg21173Cucumber (Chinese Long) v2carcuB0582
Carg21173Cucumber (Chinese Long) v3carcucB0588
Carg21173Cucumber (Chinese Long) v3carcucB0589
Carg21173Bottle gourd (USVL1VR-Ls)carlsiB502
Carg21173Melon (DHL92) v3.5.1carmeB0556
Carg21173Melon (DHL92) v3.5.1carmeB0558