Carg21059 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21059
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	WD40 repeat
Location	Cucurbita_argyrosperma_scaffold_122 : 636935 .. 639478 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACCCAAAATAACTAAAACCATTGCCATTACGTTCCACTCCCCTCCTCCTCCGTAGATCGAGAACCGCCCAAACCCCACCGCCCTTTCTCAATCCCACCGCCGCAACGCCGCCGAGTAACCCCGCCTCAATTTTTGCCCTACAACTGACAATCGACGGTTGTGGGTTTGTGTTTTGTTCATCTCTGATTTTGTGCTCCGCTCCCCCCCTTTTTGTCCTTTTTGATGATTGAGTTTTGTTGGATGAAATTTCGGCGATGAAGATGATGAACAACGGCTATAACAGTAGCTTCAACAGCAATAGTGTTGGATTGATGTCGAACGCGGCGGCGACGACGGCGTCTTCGTCGTCGTCGTCTTCGACTACGAACGCGAATTCACAATCGCAAGGCCTCAAAACCTATTTTAAAACCCCTGAAGGACGGTACAAGCTTTATTATGAAAAGACTCATCCTCCTGGCTTTCTCCCATTTTCCCATGGAAAATCATTCTCTCAGGTGCTTCTCTTTTTTTCTTCACTTTGCAATTTGATGTTGAAATTGTTGAATCCATCGTAATGTTCTTCGAATTTCTGCGTTGTCGATTGTTTTTTTGTTCTGTTTGGTTTGAATTTTAGGTGACTCTGGCGCAGCTCAAGGACAAGCCGGCGCAGGCTGGTCCAACTCCGAGCTCGAATTCTAGTACGAGTGCGAGTAGTGGAGTGAGATATGCCGCTGCAAAGTTCCTTGGGGTTGGGGGTGGAAATGGGGTTCGAGCGATTGGCTTTGCAGGTGGTAACGGCACTGGTAAAGCTGTTAATGGAGCTAGTAGAAGTGGCTCACTGGTTGGCTCAAATGGCAGCCACTCCATTCTTAACCCCAACTACGATGGGAAAGGAACCTACCTGATTTTTAATGTCGGAGATACCATCTTCATTGGTGACCTTAATTCACCAGATAAGGTAACCAACTTGTTTGAATTTGTGTTATTCAGATTTATTAGTGTGTGTATTCCGATTATGAGTTTTCTGTTAGAAATCACGAATCTCCAAAATGGTATGATGTTGTCCACATTGAGCATAACCTCTCGTAGTTTTGTGCTTTCCCAAAAGGCCTCATACCAATATCTGTATTCCTTACTCATAAACCCATGATTAACTCCTTAATTAGCCGACGTGGGATTCCTCTTCCAACAATCCTCAACATTTTCCTAGTGGTTTTTCAGGATCCTATAAAGTCCTTGCACTTTAGCAATTCAAATCCTATCTGTCATGCCTTTGATCCTGAAGCTAAGGATGGTCATGACCTACTTATTGGATTGAATTCTGGAGATGGTAAATATACTTTTTCTATGAATGATTTGTGTTTGTTGTTTCTGGAGTAAACTGTGTTTGAATTGCTCAATCGCTTTGCAAACTGTAGTGTACTCCGTATCTTTAAGGCAGCAATTACAAGATGTTGGGAAGAAGCTTGTTGGAGCCCAACATTATAACAAAGAGGGCAGTGTCAATAACAGGTAAGGGTATGAGCCATACTATTTTTTTAATCGTCCAGCGTCTTCGGCTATGTTTTCTGTTTCCTCATTGTGTGAAATGAGCATTTTCTGAACATTCTTGCCCATTCTACCTTGAGTATGAGTTACACTTCTTCTATGTGAGCTATGTCACAATCGCACTCTTGCGATAGCAATTGTGCGGCACTTGTTCTAAACAAGCGAACAAATCAGCCGTGAGTAGTTCGGATGTCATGGACAACGTCGGCGTATGTCCAGGCCTCGAGTCACGTTGCGAGAAAAGGTTTAGAAAACGTGAGCGAGGAAATACATTTGAAAACAATTTGAAGGAGTGAAGAAAGCAATGTTATATGACTATAAGCAAATAAAGAAATACCACGGCATAAATAGCATATAACTCAGGGTAGACATCCAGTTTCTAAAGATTAAAATTAGTTGTGTGAAACTTTTCACATCGATTGTCTAGTGCGTTTATTCTTATTTTTTCTGTCATTTCAGGAAAGTGCAGGTGATTACATTCTCTTTTTATTTGTTATTTATTGAAAACTGAGATTCTTTGCGATGATTCAATTAGAAAACTTTAATGCTTGCATCTCACTATAGTAACTGGGTCAGGAATTTGATACACAATGTTGTTCAAAATATTGTTGAGCATTATCAGTATGGGGATGTGGCATTTTTAATCATGATCATGGGTTGCAGTTTCTCTGCCTGAATTTGTTTTTGATGATGCAAAGACCAAGTTTTCATTAAGAAACATGAAAGAATAAACTATGGTAATACCGAAAAAAAAAAAAAAAAGGAATCTAACTAGTTAAATGTATCGTAAGTTAGAAAAATGTTGGCCAGATATTGATCGACTTGAAATTCTACCTCTTCTCTGTGTTTGTCTTTGATGATTCTTTGTTATGTATGTATGATTATTGATATTGATTTGATGCTTTTGGCAGTCGATGTACCAGCGTTGCATGGATTCCAGAAAGTGATGCTGCTTTTGTTGTTGCTCATGCTGATGGAAATTTGTATGTCTATGAAAAGGCAAGCTTGTCTTGA

mRNA sequence

ATTACCCAAAATAACTAAAACCATTGCCATTACGTTCCACTCCCCTCCTCCTCCGTAGATCGAGAACCGCCCAAACCCCACCGCCCTTTCTCAATCCCACCGCCGCAACGCCGCCGAGTAACCCCGCCTCAATTTTTGCCCTACAACTGACAATCGACGGTTGTGGGTTTGTGTTTTGTTCATCTCTGATTTTGTGCTCCGCTCCCCCCCTTTTTGTCCTTTTTGATGATTGAGTTTTGTTGGATGAAATTTCGGCGATGAAGATGATGAACAACGGCTATAACAGTAGCTTCAACAGCAATAGTGTTGGATTGATGTCGAACGCGGCGGCGACGACGGCGTCTTCGTCGTCGTCGTCTTCGACTACGAACGCGAATTCACAATCGCAAGGCCTCAAAACCTATTTTAAAACCCCTGAAGGACGGTACAAGCTTTATTATGAAAAGACTCATCCTCCTGGCTTTCTCCCATTTTCCCATGGAAAATCATTCTCTCAGGTGACTCTGGCGCAGCTCAAGGACAAGCCGGCGCAGGCTGGTCCAACTCCGAGCTCGAATTCTAGTACGAGTGCGAGTAGTGGAGTGAGATATGCCGCTGCAAAGTTCCTTGGGGTTGGGGGTGGAAATGGGGTTCGAGCGATTGGCTTTGCAGGTGGTAACGGCACTGGTAAAGCTGTTAATGGAGCTAGTAGAAGTGGCTCACTGGTTGGCTCAAATGGCAGCCACTCCATTCTTAACCCCAACTACGATGGGAAAGGAACCTACCTGATTTTTAATGTCGGAGATACCATCTTCATTGTGTACTCCGTATCTTTAAGGCAGCAATTACAAGATGTTGGGAAGAAGCTTGTTGGAGCCCAACATTATAACAAAGAGGGCAGTGTCAATAACAGTCGATGTACCAGCGTTGCATGGATTCCAGAAAGTGATGCTGCTTTTGTTGTTGCTCATGCTGATGGAAATTTGTATGTCTATGAAAAGGCAAGCTTGTCTTGA

Coding sequence (CDS)

ATGAAGATGATGAACAACGGCTATAACAGTAGCTTCAACAGCAATAGTGTTGGATTGATGTCGAACGCGGCGGCGACGACGGCGTCTTCGTCGTCGTCGTCTTCGACTACGAACGCGAATTCACAATCGCAAGGCCTCAAAACCTATTTTAAAACCCCTGAAGGACGGTACAAGCTTTATTATGAAAAGACTCATCCTCCTGGCTTTCTCCCATTTTCCCATGGAAAATCATTCTCTCAGGTGACTCTGGCGCAGCTCAAGGACAAGCCGGCGCAGGCTGGTCCAACTCCGAGCTCGAATTCTAGTACGAGTGCGAGTAGTGGAGTGAGATATGCCGCTGCAAAGTTCCTTGGGGTTGGGGGTGGAAATGGGGTTCGAGCGATTGGCTTTGCAGGTGGTAACGGCACTGGTAAAGCTGTTAATGGAGCTAGTAGAAGTGGCTCACTGGTTGGCTCAAATGGCAGCCACTCCATTCTTAACCCCAACTACGATGGGAAAGGAACCTACCTGATTTTTAATGTCGGAGATACCATCTTCATTGTGTACTCCGTATCTTTAAGGCAGCAATTACAAGATGTTGGGAAGAAGCTTGTTGGAGCCCAACATTATAACAAAGAGGGCAGTGTCAATAACAGTCGATGTACCAGCGTTGCATGGATTCCAGAAAGTGATGCTGCTTTTGTTGTTGCTCATGCTGATGGAAATTTGTATGTCTATGAAAAGGCAAGCTTGTCTTGA

Protein sequence

MKMMNNGYNSSFNSNSVGLMSNAAATTASSSSSSSTTNANSQSQGLKTYFKTPEGRYKLYYEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVGGGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFIVYSVSLRQQLQDVGKKLVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEKASLS

Homology

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BLAST of Carg21059 vs. NCBI nr
Match: XP_022964794.1 (dystrophia myotonica WD repeat-containing protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 392.1 bits (1006), Expect = 1.4e-105
Identity = 238/285 (83.51%), Postives = 238/285 (83.51%), Query Frame = 0


Query: 1   MKMMNNGYNSSFNSNSVGLMSXXXXXXXXXXXXXXXXXXXXXXQGLKTYFKTPEGRYKLY 60
           MKMMNNGYNSSFNSNSVGLMS XXXXXXXXXXXXXXXXXXXXX GLKTYFKTPEGRYKLY
Sbjct: 1   MKMMNNGYNSSFNSNSVGLMSNXXXXXXXXXXXXXXXXXXXXXXGLKTYFKTPEGRYKLY 60

Query: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVG 120
           YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAG TPSSNSSTSASSGVRYAAAKFLGVG
Sbjct: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGLTPSSNSSTSASSGVRYAAAKFLGVG 120

Query: 121 GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180
           GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI
Sbjct: 121 GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180

Query: 181 --------------------------------------------VYSVSLRQQLQDVGKK 240
                                                       VYSVSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 242
           LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK
Sbjct: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 285

[Close]

BLAST of Carg21059 vs. NCBI nr
Match: XP_022964793.1 (dystrophia myotonica WD repeat-containing protein-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 392.1 bits (1006), Expect = 1.4e-105
Identity = 238/285 (83.51%), Postives = 238/285 (83.51%), Query Frame = 0


Query: 1   MKMMNNGYNSSFNSNSVGLMSXXXXXXXXXXXXXXXXXXXXXXQGLKTYFKTPEGRYKLY 60
           MKMMNNGYNSSFNSNSVGLMS XXXXXXXXXXXXXXXXXXXXX GLKTYFKTPEGRYKLY
Sbjct: 1   MKMMNNGYNSSFNSNSVGLMSNXXXXXXXXXXXXXXXXXXXXXXGLKTYFKTPEGRYKLY 60

Query: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVG 120
           YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAG TPSSNSSTSASSGVRYAAAKFLGVG
Sbjct: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGLTPSSNSSTSASSGVRYAAAKFLGVG 120

Query: 121 GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180
           GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI
Sbjct: 121 GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180

Query: 181 --------------------------------------------VYSVSLRQQLQDVGKK 240
                                                       VYSVSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 242
           LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK
Sbjct: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 285

[Close]

BLAST of Carg21059 vs. NCBI nr
Match: XP_022970627.1 (dystrophia myotonica WD repeat-containing protein-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 389.4 bits (999), Expect = 8.9e-105
Identity = 234/285 (82.11%), Postives = 235/285 (82.46%), Query Frame = 0


Query: 1   MKMMNNGYNSSFNSNSVGLMSXXXXXXXXXXXXXXXXXXXXXXQGLKTYFKTPEGRYKLY 60
           MKM+NNGYNSSFNSNSVGLMS   XXXXXXXXXXXXXXXXXXX  LKTYFKTPEGRYKLY
Sbjct: 1   MKMINNGYNSSFNSNSVGLMSNAAXXXXXXXXXXXXXXXXXXXXXLKTYFKTPEGRYKLY 60

Query: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVG 120
           YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVG
Sbjct: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVG 120

Query: 121 GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180
           GGNGVRAIGFAG NGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI
Sbjct: 121 GGNGVRAIGFAGNNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180

Query: 181 --------------------------------------------VYSVSLRQQLQDVGKK 240
                                                       VYSVSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 242
           LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK
Sbjct: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 285

[Close]

BLAST of Carg21059 vs. NCBI nr
Match: XP_022970626.1 (dystrophia myotonica WD repeat-containing protein-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 389.4 bits (999), Expect = 8.9e-105
Identity = 234/285 (82.11%), Postives = 235/285 (82.46%), Query Frame = 0


Query: 1   MKMMNNGYNSSFNSNSVGLMSXXXXXXXXXXXXXXXXXXXXXXQGLKTYFKTPEGRYKLY 60
           MKM+NNGYNSSFNSNSVGLMS   XXXXXXXXXXXXXXXXXXX  LKTYFKTPEGRYKLY
Sbjct: 1   MKMINNGYNSSFNSNSVGLMSNAAXXXXXXXXXXXXXXXXXXXXXLKTYFKTPEGRYKLY 60

Query: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVG 120
           YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVG
Sbjct: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVG 120

Query: 121 GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180
           GGNGVRAIGFAG NGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI
Sbjct: 121 GGNGVRAIGFAGNNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180

Query: 181 --------------------------------------------VYSVSLRQQLQDVGKK 240
                                                       VYSVSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 242
           LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK
Sbjct: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 285

[Close]

BLAST of Carg21059 vs. NCBI nr
Match: XP_023521248.1 (dystrophia myotonica WD repeat-containing protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 228/285 (80.00%), Postives = 228/285 (80.00%), Query Frame = 0


Query: 1   MKMMNNGYNSSFNSNSVGLMSXXXXXXXXXXXXXXXXXXXXXXQGLKTYFKTPEGRYKLY 60
           MKMMNNGYNSSFNSNSVGLMS XXXXXXXXXXXXXXXXXXXXX GLKTYFKTPEGRYKLY
Sbjct: 1   MKMMNNGYNSSFNSNSVGLMSNXXXXXXXXXXXXXXXXXXXXXXGLKTYFKTPEGRYKLY 60

Query: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVG 120
           YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPT           GVRYAAAKFLGVG
Sbjct: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTXXXXXXXXXXXGVRYAAAKFLGVG 120

Query: 121 GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180
           GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI
Sbjct: 121 GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180

Query: 181 --------------------------------------------VYSVSLRQQLQDVGKK 240
                                                       VYSVSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 242
           LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK
Sbjct: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 285

[Close]

BLAST of Carg21059 vs. TAIR10
Match: AT3G53390.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 231.9 bits (590), Expect = 4.3e-61
Identity = 133/242 (54.96%), Postives = 159/242 (65.70%), Query Frame = 0


Query: 45  GLKTYFKTPEGRYKLYYEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTS 104
           G+KTYFKTPEG+YKL+YEKTH  G L ++HGK+ +QVT+AQLK++ A + PT +S S  S
Sbjct: 26  GIKTYFKTPEGKYKLHYEKTHSSGLLHYAHGKTVTQVTIAQLKERAAPSTPTGTS-SGYS 85

Query: 105 ASSGVRYAAAKFLGVGGGNGVRAIGFAGGNGTGKAVNGASR-SGSLVGSNGSHSILNPNY 164
           ASSG R A A+ LG   GNG RA+ F GGNG GK+V+ +SR SGS   SN + S+ N N+
Sbjct: 86  ASSGFRSATARLLGT--GNGSRALSFVGGNGGGKSVSTSSRISGSFAASNSNTSMTNTNF 145

Query: 165 DGKGTYLIFNVGDTIFI------------------------------------------- 224
           DGKGTYL+FNV D IFI                                           
Sbjct: 146 DGKGTYLVFNVSDAIFICDLNSQEKDPVKSIHFSNSNPMCHAFDPDAKDGHDLLIGLNSG 205

Query: 225 -VYSVSLRQQLQDVGKKLVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVY 242
            VY+VSLRQQLQDV KKLVGA HYNK+GSVNNSRCTS++W+P  D AFVVAHADGNLYVY
Sbjct: 206 DVYTVSLRQQLQDVSKKLVGALHYNKDGSVNNSRCTSISWVPGGDGAFVVAHADGNLYVY 264

[Close]

BLAST of Carg21059 vs. TAIR10
Match: AT2G37160.2 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 129/271 (47.60%), Postives = 149/271 (54.98%), Query Frame = 0


Query: 45  GLKTYFKTPEGRYKLYYEKTHPPGFLPFSHGKS--------------------------- 104
           G+KTYFKTPEG+YKL+YEKTHP G L ++HGK+                           
Sbjct: 26  GIKTYFKTPEGKYKLHYEKTHPSGLLHYTHGKTVTQVLCKNIKCTFHFYVLKVVSENGFV 85

Query: 105 --FSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVGGGNGVRAIGFAGGNG 164
             + QVTLA LKDKPA + P            G R A A+ L  GGGNG RA+ F GGNG
Sbjct: 86  KFWCQVTLAHLKDKPAPSTP-XXXXXXXXXXXGFRSATARLL--GGGNGNRALSFVGGNG 145

Query: 165 TGKAVNGASRSG-SLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI-------------- 224
             K V  +SR G S   S+ + S  N N+DGKGTYL+FNVGD IFI              
Sbjct: 146 GAKNVGASSRIGASFAASSSNTSATNTNFDGKGTYLVFNVGDAIFISDLNSQDKDPVKSI 205

Query: 225 ------------------------------VYSVSLRQQLQDVGKKLVGAQHYNKEGSVN 242
                                         VY+VSLRQQLQDVGKKLV AQHYNK+GSVN
Sbjct: 206 HISNSNPMCHAFHPDAKDGHDLLIGLNSGDVYTVSLRQQLQDVGKKLVSAQHYNKDGSVN 265

[Close]

BLAST of Carg21059 vs. Swiss-Prot
Match: sp|A2QVV2|CREC_ASPNC (Probable catabolite repression protein creC OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=creC PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.1e-04
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 204 NKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 242
           NK G VNNS  T + WIP S+  F+ AHA+G L VY+K
Sbjct: 244 NKNGVVNNSPVTHIKWIPGSENLFMAAHANGQLVVYDK 281

[Close]

BLAST of Carg21059 vs. Swiss-Prot
Match: sp|Q9D5R2|WDR20_MOUSE (WD repeat-containing protein 20 OS=Mus musculus OX=10090 GN=Wdr20 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.5e-04
Identity = 21/63 (33.33%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 177 TIFIVYSVSLRQQLQDVGKKLVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNL 236
           ++ + +S    Q +  + K+   ++ +N+E  ++ SR T V W+P SD+ F+VAH+ GN+
Sbjct: 117 SLLVGFSAGQVQLIDPIKKET--SKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNM 176

Query: 237 YVY 240
           Y Y
Sbjct: 177 YSY 177

[Close]

BLAST of Carg21059 vs. Swiss-Prot
Match: sp|Q8TBZ3|WDR20_HUMAN (WD repeat-containing protein 20 OS=Homo sapiens OX=9606 GN=WDR20 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 4.6e-04
Identity = 20/63 (31.75%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 177 TIFIVYSVSLRQQLQDVGKKLVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNL 236
           ++ + +S    Q +  + K+   ++ +N+E  ++ SR T V W+P S++ F+VAH+ GN+
Sbjct: 117 SLLVGFSAGQVQLIDPIKKET--SKLFNEERLIDKSRVTCVKWVPGSESLFLVAHSSGNM 176

Query: 237 YVY 240
           Y+Y
Sbjct: 177 YLY 177

[Close]

BLAST of Carg21059 vs. Swiss-Prot
Match: sp|B8N4F5|CREC_ASPFN (Probable catabolite repression protein creC OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=creC PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 7.9e-04
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 204 NKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 242
           NK G V+NS  T + WIP S+  F+ AHA+G L VY+K
Sbjct: 221 NKNGVVSNSPVTHIKWIPGSENMFMAAHANGQLVVYDK 258

[Close]

BLAST of Carg21059 vs. Swiss-Prot
Match: sp|Q2UM42|CREC_ASPOR (Probable catabolite repression protein creC OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=creC PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 7.9e-04
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 204 NKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEK 242
           NK G V+NS  T + WIP S+  F+ AHA+G L VY+K
Sbjct: 221 NKNGVVSNSPVTHIKWIPGSENMFMAAHANGQLVVYDK 258

[Close]

BLAST of Carg21059 vs. TrEMBL
Match: tr|A0A0A0LS38|A0A0A0LS38_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G085365 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 8.5e-88
Identity = 207/286 (72.38%), Postives = 210/286 (73.43%), Query Frame = 0


Query: 1   MKMMNNGYNSSFNSNSVGLMSXXXXXXXXXXXXXXXXXXXXXXQGLKTYFKTPEGRYKLY 60
           MKMMNNGYNSSFNSNSVGLMS    XXXXXXXXXXXXXXXXXX  LKTYFKTPEGRYKL+
Sbjct: 1   MKMMNNGYNSSFNSNSVGLMSNTGAXXXXXXXXXXXXXXXXXXXXLKTYFKTPEGRYKLH 60

Query: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVG 120
           YEKTHPPGFLPFSHGKS SQVTLAQLKDKPA                       KFLGVG
Sbjct: 61  YEKTHPPGFLPFSHGKSVSQVTLAQLKDKPAXXXXXXXXXXXXXXXXXXXXXXXKFLGVG 120

Query: 121 GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180
           GGNGVRAIGFAGGNGTGKAVNG SRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI
Sbjct: 121 GGNGVRAIGFAGGNGTGKAVNGTSRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180

Query: 181 --------------------------------------------VYSVSLRQQLQDVGKK 240
                                                       VYSVSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEKA 243
           LVGAQHYNKEGSVNNSRCTSVAWIP+SD AFVVAHADGNLYVYEK+
Sbjct: 241 LVGAQHYNKEGSVNNSRCTSVAWIPKSDGAFVVAHADGNLYVYEKS 286

[Close]

BLAST of Carg21059 vs. TrEMBL
Match: tr|A0A1S3CK58|A0A1S3CK58_CUCME (dystrophia myotonica WD repeat-containing protein-like OS=Cucumis melo OX=3656 GN=LOC103501867 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.1e-87
Identity = 206/286 (72.03%), Postives = 210/286 (73.43%), Query Frame = 0


Query: 1   MKMMNNGYNSSFNSNSVGLMSXXXXXXXXXXXXXXXXXXXXXXQGLKTYFKTPEGRYKLY 60
           MKMMNNGYNSSFNSNSVGLMS    XXXXXXXXXXXXXXXXXX  LKTYFKTPEGRYKL+
Sbjct: 1   MKMMNNGYNSSFNSNSVGLMSNTGAXXXXXXXXXXXXXXXXXXXXLKTYFKTPEGRYKLH 60

Query: 61  YEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTSASSGVRYAAAKFLGVG 120
           YEKTHPPGFLPFSHGKS SQVTLAQLKDKPA                       KFLGVG
Sbjct: 61  YEKTHPPGFLPFSHGKSVSQVTLAQLKDKPAXXXXXXXXXXXXXXXXXXXXXXXKFLGVG 120

Query: 121 GGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180
           GGNGVRAIGFAGGNGTGKAVNG SRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI
Sbjct: 121 GGNGVRAIGFAGGNGTGKAVNGTSRSGSLVGSNGSHSILNPNYDGKGTYLIFNVGDTIFI 180

Query: 181 --------------------------------------------VYSVSLRQQLQDVGKK 240
                                                       VYSVSLRQQLQDVGKK
Sbjct: 181 GDLNSPDKDPIKSLHFSNSNPICHAFDPEAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKK 240

Query: 241 LVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYEKA 243
           LVGAQHYNKEGSVNNSRCTS+AWIP+SD AFVVAHADGNLYVYEK+
Sbjct: 241 LVGAQHYNKEGSVNNSRCTSIAWIPKSDGAFVVAHADGNLYVYEKS 286

[Close]

BLAST of Carg21059 vs. TrEMBL
Match: tr|D7SKW7|D7SKW7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g03040 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.6e-64
Identity = 143/241 (59.34%), Postives = 161/241 (66.80%), Query Frame = 0


Query: 45  GLKTYFKTPEGRYKLYYEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTS 104
           GLKTYFKTPEGRYKL+YEKTHP   L + HGKS +QVTLA LK+K AQ  PTPS  SS S
Sbjct: 25  GLKTYFKTPEGRYKLHYEKTHPSSLLQYPHGKSVTQVTLAYLKEKQAQLAPTPS--SSMS 84

Query: 105 ASSGVRYAAAKFLGVGGGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYD 164
           ASSGVR+AAA+FL  GGGNG R + F GGNG  K+  G SRS SL G +  +S+L  NYD
Sbjct: 85  ASSGVRFAAARFL--GGGNGGRTLSFVGGNGASKSFTGTSRSSSLGGLSNCNSMLTSNYD 144

Query: 165 GKGTYLIFNVGDTIFI-------------------------------------------- 224
           GKGTYLIFN+GDTI+I                                            
Sbjct: 145 GKGTYLIFNLGDTIYISDFNSQDKDPIKAIHFSNSNPVCHAFDAEAKDGHDLLIGLNSGD 204

Query: 225 VYSVSLRQQLQDVGKKLVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYE 242
           VYSVSLRQQLQD GKKLVGAQHYNK+GSV+ SRCTS+AWIP+ D AF VAH+DGNLYVYE
Sbjct: 205 VYSVSLRQQLQDFGKKLVGAQHYNKDGSVSTSRCTSIAWIPQGDGAFAVAHSDGNLYVYE 261

[Close]

BLAST of Carg21059 vs. TrEMBL
Match: tr|U5D622|U5D622_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00039p00137170 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.3e-63
Identity = 143/244 (58.61%), Postives = 165/244 (67.62%), Query Frame = 0


Query: 45  GLKTYFKTPEGRYKLYYEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTS 104
           GLKTYFKTPEGRYKL YEKTHP G L +SHGK  +QVT AQLKDKP    PTP+S S+ S
Sbjct: 10  GLKTYFKTPEGRYKLQYEKTHPSGLLHYSHGKVVTQVTFAQLKDKPVPQ-PTPAS-STLS 69

Query: 105 ASSGVRYAAAKFLGVGGGNGVRAIGFAGGNGTGKAVNGASRSGSLVG---SNGSHSILNP 164
           ++SGVR AAA+ L  GGGNG RA+ F GGNGT K V+G SR GSLVG   S  ++  ++ 
Sbjct: 70  STSGVRLAAARLL--GGGNGSRALSFVGGNGTSKTVSGNSRIGSLVGHGVSGSTNGPISS 129

Query: 165 NYDGKGTYLIFNVGDTIFI----------------------------------------- 224
           NYDGKGTYLIFNVGDT+F+                                         
Sbjct: 130 NYDGKGTYLIFNVGDTLFVSDFNSQDKDPIKAIHFSNSNPVCHAFDPEAKDGHDLVIGLS 189

Query: 225 ---VYSVSLRQQLQDVGKKLVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLY 242
              VYSVSLRQQLQD+GKKLVGAQHYNK+G++NNSRCTS+AW+PE D  FVVAHADGNLY
Sbjct: 190 SGDVYSVSLRQQLQDLGKKLVGAQHYNKDGTLNNSRCTSIAWVPEGDGLFVVAHADGNLY 249

[Close]

BLAST of Carg21059 vs. TrEMBL
Match: tr|A0A067KBB1|A0A067KBB1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16493 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.0e-62
Identity = 143/242 (59.09%), Postives = 161/242 (66.53%), Query Frame = 0


Query: 45  GLKTYFKTPEGRYKLYYEKTHPPGFLPFSHGKSFSQVTLAQLKDKPAQAGPTPSSNSSTS 104
           GLKTYFKTPEGRYKL+YEKTHP G L ++HGK+ +QVTLA LKDKPA + PT  S SS S
Sbjct: 22  GLKTYFKTPEGRYKLHYEKTHPSGPLHYAHGKTVTQVTLANLKDKPAPSTPTAPS-SSFS 81

Query: 105 ASSGVRYAAAKFLGVGGGNGVRAIGFAGGNGTGKAVNGASRSGSLVGSNGSHSILNPNYD 164
           ASSGVR AAA+ L  G GNG RA+ F           G+SR GSL  S+ S+SI+NPN+D
Sbjct: 82  ASSGVRSAAARLL--GAGNGSRALSFVXXXXXXXXXXGSSRIGSLGASSSSNSIINPNFD 141

Query: 165 GKGTYLIFNVGDTIFI-------------------------------------------- 224
           GKGTYL+FNVGD IFI                                            
Sbjct: 142 GKGTYLVFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGD 201

Query: 225 VYSVSLRQQLQDVGKKLVGAQHYNKEGSVNNSRCTSVAWIPESDAAFVVAHADGNLYVYE 243
           VYSVSLRQQLQDVGKKLVGAQHYNK+GSVNNSRCTS+AW+P  D AFVVAHADGNLYVYE
Sbjct: 202 VYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTSIAWVPGGDGAFVVAHADGNLYVYE 260

The following BLAST results are available for this feature:

BLAST of Carg21059 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964794.1	1.4e-105	83.51	dystrophia myotonica WD repeat-containing protein-like isoform X2 [Cucurbita mos...	[more]
XP_022964793.1	1.4e-105	83.51	dystrophia myotonica WD repeat-containing protein-like isoform X1 [Cucurbita mos...	[more]
XP_022970627.1	8.9e-105	82.11	dystrophia myotonica WD repeat-containing protein-like isoform X2 [Cucurbita max...	[more]
XP_022970626.1	8.9e-105	82.11	dystrophia myotonica WD repeat-containing protein-like isoform X1 [Cucurbita max...	[more]
XP_023521248.1	1.1e-99	80.00	dystrophia myotonica WD repeat-containing protein-like isoform X2 [Cucurbita pep...	[more]

BLAST of Carg21059 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53390.1	4.3e-61	54.96	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G37160.2	1.9e-53	47.60	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Carg21059 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A2QVV2\|CREC_ASPNC	2.1e-04	55.26	Probable catabolite repression protein creC OS=Aspergillus niger (strain CBS 513...	[more]
sp\|Q9D5R2\|WDR20_MOUSE	3.5e-04	33.33	WD repeat-containing protein 20 OS=Mus musculus OX=10090 GN=Wdr20 PE=2 SV=1	[more]
sp\|Q8TBZ3\|WDR20_HUMAN	4.6e-04	31.75	WD repeat-containing protein 20 OS=Homo sapiens OX=9606 GN=WDR20 PE=1 SV=2	[more]
sp\|B8N4F5\|CREC_ASPFN	7.9e-04	52.63	Probable catabolite repression protein creC OS=Aspergillus flavus (strain ATCC 2...	[more]
sp\|Q2UM42\|CREC_ASPOR	7.9e-04	52.63	Probable catabolite repression protein creC OS=Aspergillus oryzae (strain ATCC 4...	[more]

BLAST of Carg21059 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LS38\|A0A0A0LS38_CUCSA	8.5e-88	72.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G085365 PE=4 SV=1	[more]
tr\|A0A1S3CK58\|A0A1S3CK58_CUCME	1.1e-87	72.03	dystrophia myotonica WD repeat-containing protein-like OS=Cucumis melo OX=3656 G...	[more]
tr\|D7SKW7\|D7SKW7_VITVI	6.6e-64	59.34	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g03040 PE=4 SV=...	[more]
tr\|U5D622\|U5D622_AMBTC	4.3e-63	58.61	Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00039p00137170...	[more]
tr\|A0A067KBB1\|A0A067KBB1_JATCU	8.0e-62	59.09	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16493 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21059-RA	Carg21059-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..47
None	No IPR available	PANTHER	PTHR14107:SF18	SUBFAMILY NOT NAMED	coord: 31..180
None	No IPR available	PANTHER	PTHR14107	WD REPEAT PROTEIN	coord: 31..180
None	No IPR available	PANTHER	PTHR14107	WD REPEAT PROTEIN	coord: 183..242
None	No IPR available	PANTHER	PTHR14107:SF18	SUBFAMILY NOT NAMED	coord: 183..242
None	No IPR available	SUPERFAMILY	SSF101898	NHL repeat	coord: 117..241

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21059	Cla005040	Watermelon (97103) v1	carwmB0725
Carg21059	Lsi02G014250	Bottle gourd (USVL1VR-Ls)	carlsiB666

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21059	Cucurbita pepo (Zucchini)	carcpeB1022
Carg21059	Cucurbita pepo (Zucchini)	carcpeB1023
Carg21059	Wild cucumber (PI 183967)	carcpiB0761
Carg21059	Cucumber (Chinese Long) v2	carcuB0745
Carg21059	Cucumber (Chinese Long) v3	carcucB0764
Carg21059	Melon (DHL92) v3.5.1	carmeB0721
Carg21059	Melon (DHL92) v3.5.1	carmeB0722
Carg21059	Melon (DHL92) v3.6.1	carmedB0734
Carg21059	Watermelon (Charleston Gray)	carwcgB0704
Carg21059	Watermelon (97103) v2	carwmbB0761
Carg21059	Wax gourd	carwgoB0860
Carg21059	Wax gourd	carwgoB0857
Carg21059	Silver-seed gourd	carcarB447
Carg21059	Cucumber (Gy14) v2	carcgybB0723
Carg21059	Cucumber (Gy14) v1	carcgyB0818
Carg21059	Cucurbita maxima (Rimu)	carcmaB1017
Carg21059	Cucurbita maxima (Rimu)	carcmaB1018
Carg21059	Cucurbita moschata (Rifu)	carcmoB0989
Carg21059	Cucurbita moschata (Rifu)	carcmoB0990