Carg20972 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20972
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	U11/U12 small nuclear ribonucleoprotein 59 kDa protein
Location	Cucurbita_argyrosperma_scaffold_170 : 106186 .. 111270 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTCGTCCTTTCTCGAGGCTTTAACATATATGTTTACGAGCTGAAGGCCGAAGCTTCGCAAGTTGCACAGAAAATTCGAAAGAGCATCGGTTTACTTCCTTCTTCACATAACTTGTCCTAATCTGGTTGACAGGTTTTTTCTTAATTTGTTTTTCATTGACTATTGCTTCCAGCAGCAATGAATCCAGTTCCGCATCAGTTTGCGGCTCAACCTCCGAGGTTCTTGATGCCGCCACCGAATCAGCCGCCGTTTTGTTCATCTTTCTGGGACAATCTGAATGTGCGCGATCGTTTAAGGGATTTGCAAGATAGTCTTGATCTCGCCAAGTCAATGTATGTGTTTGTTCGTAGTTTTTGGAATACTCCGTCCCAATTGATGTCCTTTTTTTTTTTTTTTTTTTCCTGCTATTGTATTGTAGTTCTCAAATACGCTCGTCCTAAATTGTGATTGAAGTATAAATATTGATAGGCAGAAAGAGCTTGAAATGTTGACGATAATCAAAGAGGGCAAATCATCCGAGCAGAGTGCGGATAATCTGCCTTATGATTCTTCTATTGGTGAATTTTCTGATTACTTGGAAGATAAAAGGATTAGTTTGGAGTTGCAAGAATCGCGTTCAGTCGAAGTTGCGGCTGCTTTGATGAAAAGGTTAAGAGAGCAGCTTCATCCATTTAGGATCGATACTGATGAATCGAGTCTCCGGGAAGCAGTTAAGTTATCTACTAAATTATCGAAGGCCAAGAGAAACAAGCAGTGGAGAAAGAGAAAGAGGAAGCGCATTGCTGAATCACTTGCAAAGGTAGTATTTAGGCAATTTTTATCCAAAATTATCTTACATATTCACCGTAATCTTACTTCTTTTGAGCCTTTTATTGTGAAATCTTAGGAACGTGAAAGTTTTGACCAAGTTGATCGGGAGGCTGATGAATGGAGGGCCAGGGAGATTGCCAAGGACATTGCAAAACGTAAGGTGCTGGAATATCCACTGATGTTTGTTTCTATTCTCTCACTCGACACTGAGATTTTTTGTTTTGGCTTCTTTTTTAGGTTGGATAAGCGAGTTCCTTTGTAATCTGAATTTTATTCTAGACATATAGAAACATTCAGGGTATTATTTATTCATTCATTTATGTTCATTTATAACAATAGCCATTGTTTGATAGTTTTGTTACTAGATGAAGAAGCATTATGCTTTTTTCTATTTCAAATTCAGAATGAGTGGCCACAAGGATATCAAAGTACAATACAGAATGGAGTGTCTATAAATATGTTGATCCAACTCATTTATGGGCCTATTTTATCATAACCCCTATGTCTTTTTGTTCCGTATTTGTTTTAAATATTGAAACTAGCTCTGCTTTTAATTGCTGTCAGCCCTCATGTTCATATTAATTCTATATTCTTCTCATCCCATGAACATTTAGGTTATTTGCCTCCGATATTAATATATCAACAGCTGTTAACATTTTTCAAAGTTTTTTTTTCTCATGCTTTGACTTGATTACTATGGTGCATTTGATTGTCTTGCGACTAGAAAACATTGGCATAATGCATTGACAGAATAGTTTTAATTGTTGACGAGCAATAAATTCATTCATACAATAAAATTGGTGAATGGGTTTTAGGTGGAGAAGATGAAAGAAATTGCAAGAATTAAAGCAAAAGAGGAGAAAAAGAAGCTAGATTCTGAGGTGAGAATCAATCGAGATAATTACCAGTTCTATTAAAATGTTCTTGCTGCCTTCTTTTCCTTCCTCTTATGAACTTCTTGCTAATGTTGTATACCATGTAGCTTGAACTAGCACTCATAGTGGAAAAGTTGCAAGAATTGCGCTCCATCAGGATCCAAAAATTGAAGAAACAAGGTTCAACCTCCTTCGTGTTCTTCCTTTATAACTACATTGTTATATATCCTTCTTGACGTGCAGATGTTTTGTTTTGCTGTTTTAGCAGATTTGTCACATTCTTTTTCTGTACCCTTATTTTCTTTTTGTATAAATTGCAGTATGCTATCTAGCTAGTGAAATGTACTTAGATTCTTGAATGGCTGAACTCGCTATCTTGTGATTTCATTGAAGATTGAATAAGTGATGAGAGAGAGTATGGAAGCTGAAGGCAAGAAAAAGGATTTAGGTGGTACTCCCTTCTAGGATTGTCAAAGTTGAAACTAAATCATTTAGAATTTTCTTTGATGAAAAAAAATATGGAGGGAGAGTGAAGATTGAGGAATGATAGTGATTTTTTGCTTTGATTCCTTATCCAATTGGTTTATCAACATTTTGGACTAAGAAGATCCTACGAAGTCTCTTGAAAATCCTATAAATAACATATTTTTCAAGCAAACAAGGTGTGATCTTATACTATTTTGATGAAGAAAACAATCAATAGAAGAGTGTGCTAGAGATTTGTTAGATTGATTCATTTTAAGGCAACTCTAGTCTTTTTATTCCTGAAGGGGAGGTAGCATGATTCAATTAAAGATGAGGTTAGGAATCAAACTTTCAGCCTCAAGGAAAGGTCGCGGTGTCTTAACTCTTGAGTTAGTCTTGCGCTGTCAAGAAAAGATGTTTTTTGATAGTGTTAGCAGGAATCACTTGAAGAGTAAGGTGAAAGGGTTGGAAGGCGTCAGGAGGGGAGGGCGAAAATTTTTGGAGGAGGCTGTTAAGTGAAAGGAAAAATGTAAAGAAGTTATCTACCGCTGAGTGAAAAAACATAATTGAGATTACTTTCCACAATGATTGGTTGGTCATTTTAGAAGCCTTGTTATGGAGGGTGGATTGATATAAGACGTCTACCAGAGTTATTGTATAACTACGAAACGTTGAAGAAATTTAGGAACAGTTATGGAGGTTTCCTCCTTCGCACTACAGAAACAATTAATTTACTTGACTATATAGAAGCATGTATAGAAATTAGAGGAATAATTGTGGTTTTATTCCAGCTGAGGTGGTTATTGAAGTGGGACTCTCTTTAGGATAGGAATGATGTTGTAAATGGGAAGTTACGTGGATGAGAAGGGTATGTTTGGTTTTCTTAGATGATATGTAGTGTACTTCGAGATTTAAGCTTTAGTTTGTTCTTTGGAACTATTTTTTTTCCCCAACTTTTCAATATGTCGATGCAAACAATTTTTTTATTAAAAAAAAAAAAAAAAAAAGATTGCTGATGTGAGTTCTCATTACCTTCTGTATTATAAAATGGCCCTTTATGTGGTAGATATGAGTACTTTGAAAAGTAGTATTTTGCATCTCTGTATACAACCCTGTTTATACTTTTGAATCCTCTGAGCAAAGAGAATTTTGACACTTGAGTTTGGTTATAGCCTAATGATCGTAGTGGCTGGCAATATATTTGTCCAGGTCATTTCCTTCCTGAGGAGGATGATAAGTTTCTCGAGAAGGTTCGAGCTGCAGTTGAGGAAGAGGAACGCCAAGCCCTAGCTGCAGCGGATACGGATGCTGCGAAGGATGCCATTGCTACTGCAGAAGTGTCTAGGAAGACTATTCCGAGTTATAACCCTGAATCAAGGGATCCAGATAGTGCTACAGAGAGGTCTGAAGAAAGAAATGATCAAAGAGCTGCGAGTGTAGATGATAAGGTCTCCAACACTAGCACTAATAAAGAGCCTGGGAAACAGTTTGGAGAAGTACAAGGTTTTGGAAGAGCTTATGACTATGCTGCCAACTTACCCATGGAATTCTATCATTATTATTATGGAAGTAACACCGATATGGGCACGTTAATTGAGGTAATTGTAGTAATATTCCTGCGCTTTTCACTTATTGCAGAATCTTGTGGCATAGCTCATGAAATGCATGCAGTTGGTGCATATTTTGATGTTATGTCCAAGGGTGAGTTTGGGAGTCGGTGTTTCTCATTGTTTCTTCCTGAGCATTTTTCAGAAGAAAGGTATATTTCGATCAGTTTTTGGGAAACATAGATATCTTTAGTCGTACAAATATGCTGAAAATAATGGTATTATTTGAGCCAGACACCAGGCGGTGTGCCAGTGACGACGTTGACCTCCAAAGGAGTGGATTGTGAGATGCTACATCGGTTGGAGAGGGGAACAAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACTGTGAGACTGACAATGATACGTAACAAGCTAAAGCGGACAATATTTAATAGCGGCGAGCTTGGACTCTTACAATAGCTTTATTAACAAATTTGTGGTATGATACGAGTAAATTTAACCCTCTACATACTAAACATAGGCTTGAAGCTAACTCAAAAGTACAAAACTCTGATTCAGAATCCCCCCTTGGTGCATTCATCACCATCGACATACAGAAAATCTGATTCTGATAACTGTGTTGTTTTAGTCAAGAGTTCTTGTGATACTGAAGAACATTCCCTTACGTCAGTCTCCAATGGAACCAATAACACCCTTACCTCTTTGTGTGCAGGTAAGAAGATCATGGGATGCATTTATAAGGCCTGGAGGAAGGTAAGATGCGATTCTTACTCAAGTTTTGATAAGTTACCATTAGAAAATTAGTGATCTGATGGAAGTAATTAACACCTCGCTATTGATTTTGAACTTGCATGAATACATCACAGATTTATAACAAACACCACCATTCTAACTAGTAATTTACACCTCGCTGTAATAGCTACTCGAGTGTGCTAGTTTTATAAACCTCATATCTCTACAGTTTCTTATAGTGTATTTATTGCCCGGAGAGGTGGGAGAGTTTGTTAATTGAATGTCCCTACGAAATTTTGTGCAGCCGTATACCAGGACATTGGGTTCAACCACCACCACCAGCCGATGAAATATGGGCAGCATATTTGGTTCGACCAAAATGAAACCACGCAAACACATGTTCTGAAATGGTTTCCCGAAAGATGTTGCTACCGATTGGTATGGGTCGCAAGTGTGTTTCAAATGAAAATTAGTTAGGGAGGCTGCTATAATGTATGAGTGAGAAACTCAGAAGTTTCTTCATTTTTTATCTTGTGGTTACTGGAGTTGTGCAGATTTCAAAATTTACATCAATCACATTATGTGAACATTTTTTTCAAGCATCTGTA

mRNA sequence

CCCTCGTCCTTTCTCGAGGCTTTAACATATATGTTTACGAGCTGAAGGCCGAAGCTTCGCAAGTTGCACAGAAAATTCGAAAGAGCATCGGTTTACTTCCTTCTTCACATAACTTGTCCTAATCTGGTTGACAGGTTTTTTCTTAATTTGTTTTTCATTGACTATTGCTTCCAGCAGCAATGAATCCAGTTCCGCATCAGTTTGCGGCTCAACCTCCGAGGTTCTTGATGCCGCCACCGAATCAGCCGCCGTTTTGTTCATCTTTCTGGGACAATCTGAATGTGCGCGATCGTTTAAGGGATTTGCAAGATAGTCTTGATCTCGCCAAGTCAATGCAGAAAGAGCTTGAAATGTTGACGATAATCAAAGAGGGCAAATCATCCGAGCAGAGTGCGGATAATCTGCCTTATGATTCTTCTATTGGTGAATTTTCTGATTACTTGGAAGATAAAAGGATTAGTTTGGAGTTGCAAGAATCGCGTTCAGTCGAAGTTGCGGCTGCTTTGATGAAAAGGTTAAGAGAGCAGCTTCATCCATTTAGGATCGATACTGATGAATCGAGTCTCCGGGAAGCAGTTAAGTTATCTACTAAATTATCGAAGGCCAAGAGAAACAAGCAGTGGAGAAAGAGAAAGAGGAAGCGCATTGCTGAATCACTTGCAAAGGAACGTGAAAGTTTTGACCAAGTTGATCGGGAGGCTGATGAATGGAGGGCCAGGGAGATTGCCAAGGACATTGCAAAACGTAAGGTGGAGAAGATGAAAGAAATTGCAAGAATTAAAGCAAAAGAGGAGAAAAAGAAGCTAGATTCTGAGCTTGAACTAGCACTCATAGTGGAAAAGTTGCAAGAATTGCGCTCCATCAGGATCCAAAAATTGAAGAAACAAGGTCATTTCCTTCCTGAGGAGGATGATAAGTTTCTCGAGAAGGTTCGAGCTGCAGTTGAGGAAGAGGAACGCCAAGCCCTAGCTGCAGCGGATACGGATGCTGCGAAGGATGCCATTGCTACTGCAGAAGTGTCTAGGAAGACTATTCCGAGTTATAACCCTGAATCAAGGGATCCAGATAGTGCTACAGAGAGGTCTGAAGAAAGAAATGATCAAAGAGCTGCGAGTGTAGATGATAAGGTCTCCAACACTAGCACTAATAAAGAGCCTGGGAAACAGTTTGGAGAAGTACAAGGTTTTGGAAGAGCTTATGACTATGCTGCCAACTTACCCATGGAATTCTATCATTATTATTATGGAAGTAACACCGATATGGGCACGTTAATTGAGGTAAGAAGATCATGGGATGCATTTATAAGGCCTGGAGGAAGCCGTATACCAGGACATTGGGTTCAACCACCACCACCAGCCGATGAAATATGGGCAGCATATTTGGTTCGACCAAAATGAAACCACGCAAACACATGTTCTGAAATGGTTTCCCGAAAGATGTTGCTACCGATTGGTATGGGTCGCAAGTGTGTTTCAAATGAAAATTAGTTAGGGAGGCTGCTATAATGTATGAGTGAGAAACTCAGAAGTTTCTTCATTTTTTATCTTGTGGTTACTGGAGTTGTGCAGATTTCAAAATTTACATCAATCACATTATGTGAACATTTTTTTCAAGCATCTGTA

Coding sequence (CDS)

ATGAATCCAGTTCCGCATCAGTTTGCGGCTCAACCTCCGAGGTTCTTGATGCCGCCACCGAATCAGCCGCCGTTTTGTTCATCTTTCTGGGACAATCTGAATGTGCGCGATCGTTTAAGGGATTTGCAAGATAGTCTTGATCTCGCCAAGTCAATGCAGAAAGAGCTTGAAATGTTGACGATAATCAAAGAGGGCAAATCATCCGAGCAGAGTGCGGATAATCTGCCTTATGATTCTTCTATTGGTGAATTTTCTGATTACTTGGAAGATAAAAGGATTAGTTTGGAGTTGCAAGAATCGCGTTCAGTCGAAGTTGCGGCTGCTTTGATGAAAAGGTTAAGAGAGCAGCTTCATCCATTTAGGATCGATACTGATGAATCGAGTCTCCGGGAAGCAGTTAAGTTATCTACTAAATTATCGAAGGCCAAGAGAAACAAGCAGTGGAGAAAGAGAAAGAGGAAGCGCATTGCTGAATCACTTGCAAAGGAACGTGAAAGTTTTGACCAAGTTGATCGGGAGGCTGATGAATGGAGGGCCAGGGAGATTGCCAAGGACATTGCAAAACGTAAGGTGGAGAAGATGAAAGAAATTGCAAGAATTAAAGCAAAAGAGGAGAAAAAGAAGCTAGATTCTGAGCTTGAACTAGCACTCATAGTGGAAAAGTTGCAAGAATTGCGCTCCATCAGGATCCAAAAATTGAAGAAACAAGGTCATTTCCTTCCTGAGGAGGATGATAAGTTTCTCGAGAAGGTTCGAGCTGCAGTTGAGGAAGAGGAACGCCAAGCCCTAGCTGCAGCGGATACGGATGCTGCGAAGGATGCCATTGCTACTGCAGAAGTGTCTAGGAAGACTATTCCGAGTTATAACCCTGAATCAAGGGATCCAGATAGTGCTACAGAGAGGTCTGAAGAAAGAAATGATCAAAGAGCTGCGAGTGTAGATGATAAGGTCTCCAACACTAGCACTAATAAAGAGCCTGGGAAACAGTTTGGAGAAGTACAAGGTTTTGGAAGAGCTTATGACTATGCTGCCAACTTACCCATGGAATTCTATCATTATTATTATGGAAGTAACACCGATATGGGCACGTTAATTGAGGTAAGAAGATCATGGGATGCATTTATAAGGCCTGGAGGAAGCCGTATACCAGGACATTGGGTTCAACCACCACCACCAGCCGATGAAATATGGGCAGCATATTTGGTTCGACCAAAATGA

Protein sequence

MNPVPHQFAAQPPRFLMPPPNQPPFCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPFRIDTDESSLREAVKLSTKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDREADEWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPDSATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK

Homology

[Close]

BLAST of Carg20972 vs. NCBI nr
Match: XP_023526863.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 735.7 bits (1898), Expect = 8.3e-209
Identity = 402/405 (99.26%), Postives = 403/405 (99.51%), Query Frame = 0


Query: 1   MNPVPHQFAAQPPRFLMPPPNQPPFCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60
           MNPVPHQFAAQPPRFLMPPPNQPP CSSFWDNLNVRDRLRDLQDSLDLAKSMQKELE+LT
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPSCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEVLT 60

Query: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120
           IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHP 
Sbjct: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPL 120

Query: 121 RIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEWRAR 180
           RIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEWRAR
Sbjct: 121 RIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEWRAR 180

Query: 181 EIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGHFL 240
           EIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGHFL
Sbjct: 181 EIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGHFL 240

Query: 241 PEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPDSATE 300
           PEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPDSATE
Sbjct: 241 PEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPDSATE 300

Query: 301 RSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSNTD 360
           RSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSNTD
Sbjct: 301 RSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSNTD 360

Query: 361 MGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 406
           MGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK
Sbjct: 361 MGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 405

[Close]

BLAST of Carg20972 vs. NCBI nr
Match: XP_022924846.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucurbita moschata])

HSP 1 Score: 731.9 bits (1888), Expect = 1.2e-207
Identity = 401/405 (99.01%), Postives = 401/405 (99.01%), Query Frame = 0


Query: 1   MNPVPHQFAAQPPRFLMPPPNQPPFCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60
           MNPVPHQFAAQPPRFLMPPPNQPP CSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPSCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60

Query: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120
           IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF
Sbjct: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120

Query: 121 RIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEWRAR 180
           RIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEWRAR
Sbjct: 121 RIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEWRAR 180

Query: 181 EIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGHFL 240
           EIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGHFL
Sbjct: 181 EIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGHFL 240

Query: 241 PEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPDSATE 300
           PEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYN ESRDPDSATE
Sbjct: 241 PEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNLESRDPDSATE 300

Query: 301 RSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSNTD 360
           RSEERNDQR ASVDDKVSN STNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSNTD
Sbjct: 301 RSEERNDQRTASVDDKVSNISTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSNTD 360

Query: 361 MGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 406
           MGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK
Sbjct: 361 MGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 405

[Close]

BLAST of Carg20972 vs. NCBI nr
Match: XP_022980475.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucurbita maxima])

HSP 1 Score: 728.4 bits (1879), Expect = 1.3e-206
Identity = 399/405 (98.52%), Postives = 399/405 (98.52%), Query Frame = 0


Query: 1   MNPVPHQFAAQPPRFLMPPPNQPPFCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60
           MNPVPHQFAAQPPRFLMPPPNQPP CSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPSCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60

Query: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120
           IIKE KSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF
Sbjct: 61  IIKESKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120

Query: 121 RIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEWRAR 180
           RIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEWRAR
Sbjct: 121 RIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEWRAR 180

Query: 181 EIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGHFL 240
           EIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGHFL
Sbjct: 181 EIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGHFL 240

Query: 241 PEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPDSATE 300
           PEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTI SYNPESRDPDSATE
Sbjct: 241 PEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTISSYNPESRDPDSATE 300

Query: 301 RSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSNTD 360
           R EERNDQ  ASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSNTD
Sbjct: 301 RPEERNDQTTASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSNTD 360

Query: 361 MGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 406
           MGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK
Sbjct: 361 MGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 405

[Close]

BLAST of Carg20972 vs. NCBI nr
Match: XP_023526861.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucurbita pepo subsp. pepo] >XP_023526862.1 U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 728.0 bits (1878), Expect = 1.7e-206
Identity = 401/410 (97.80%), Postives = 403/410 (98.29%), Query Frame = 0


Query: 1   MNPVPHQFAAQPPRFLMPPPNQPPFCSSFWDNLNVRDRLRDLQDSLDLAKSM-----QKE 60
           MNPVPHQFAAQPPRFLMPPPNQPP CSSFWDNLNVRDRLRDLQDSLDLAKS+     QKE
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPSCSSFWDNLNVRDRLRDLQDSLDLAKSIINIDRQKE 60

Query: 61  LEMLTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLRE 120
           LE+LTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLRE
Sbjct: 61  LEVLTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLRE 120

Query: 121 QLHPFRIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREAD 180
           QLHP RIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREAD
Sbjct: 121 QLHPLRIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREAD 180

Query: 181 EWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKK 240
           EWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKK
Sbjct: 181 EWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKK 240

Query: 241 QGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDP 300
           QGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDP
Sbjct: 241 QGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDP 300

Query: 301 DSATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYY 360
           DSATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYY
Sbjct: 301 DSATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYY 360

Query: 361 GSNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 406
           GSNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK
Sbjct: 361 GSNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 410

[Close]

BLAST of Carg20972 vs. NCBI nr
Match: XP_022924843.1 (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucurbita moschata] >XP_022924844.1 U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucurbita moschata] >XP_022924845.1 U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 724.2 bits (1868), Expect = 2.5e-205
Identity = 400/410 (97.56%), Postives = 401/410 (97.80%), Query Frame = 0


Query: 1   MNPVPHQFAAQPPRFLMPPPNQPPFCSSFWDNLNVRDRLRDLQDSLDLAKSM-----QKE 60
           MNPVPHQFAAQPPRFLMPPPNQPP CSSFWDNLNVRDRLRDLQDSLDLAKS+     QKE
Sbjct: 1   MNPVPHQFAAQPPRFLMPPPNQPPSCSSFWDNLNVRDRLRDLQDSLDLAKSIINIDRQKE 60

Query: 61  LEMLTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLRE 120
           LEMLTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLRE
Sbjct: 61  LEMLTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLRE 120

Query: 121 QLHPFRIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREAD 180
           QLHPFRIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREAD
Sbjct: 121 QLHPFRIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREAD 180

Query: 181 EWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKK 240
           EWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKK
Sbjct: 181 EWRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKK 240

Query: 241 QGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDP 300
           QGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYN ESRDP
Sbjct: 241 QGHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNLESRDP 300

Query: 301 DSATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYY 360
           DSATERSEERNDQR ASVDDKVSN STNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYY
Sbjct: 301 DSATERSEERNDQRTASVDDKVSNISTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYY 360

Query: 361 GSNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 406
           GSNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK
Sbjct: 361 GSNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 410

[Close]

BLAST of Carg20972 vs. TAIR10
Match: AT2G46200.1 (unknown protein)

HSP 1 Score: 310.1 bits (793), Expect = 2.1e-84
Identity = 196/406 (48.28%), Postives = 246/406 (60.59%), Query Frame = 0


Query: 1   MNPVPHQFAAQPPRFLMPPPNQPPFCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60
           MNP   Q    P  +    P  PP C  FW+  N+ D+L+ LQD+L+LAKSM+KELE L 
Sbjct: 1   MNPANFQPPNPPFHWAPMLPPDPPRCGMFWNTKNITDQLKQLQDTLNLAKSMEKELEALK 60

Query: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120
           +IK+ K    S +N   DS +    +YLE +++ L  QE  SV+ A +LM  LR QL PF
Sbjct: 61  MIKDAKG---SVENAVQDSGV----EYLEARKMDLGQQEMLSVDAANSLMSTLRAQLEPF 120

Query: 121 RIDTDESSLRE----AVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADE 180
           R   DE+S  E    AV+L+ K+ K+ RN           AE  AKE E F+Q DREADE
Sbjct: 121 RFVVDENSPWEEKSAAVRLTCKMKKSIRNKLWKKRKRRCAAEMRAKEPERFEQADREADE 180

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ 240
           WR +E+AKD+A RKV++MK I +IKAK E+K+L+ ELELALIVE++QELRS+RI+KLKKQ
Sbjct: 181 WREKEMAKDMANRKVDEMKAIEKIKAKRERKRLEPELELALIVEEMQELRSLRIEKLKKQ 240

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPD 300
           GHFLPEEDDKF E VRAAVE+EE QA +  +T+  +  IA                    
Sbjct: 241 GHFLPEEDDKFFESVRAAVEQEENQAQSLINTETEEHVIAXXXXXXXXXXXXXXXXXXXX 300

Query: 301 SATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYG 360
             T          AAS +       T K P              D  +NLP+E YHYYYG
Sbjct: 301 XXT---------NAASCE------RTMKAP----------DNGCDNISNLPVEVYHYYYG 360

Query: 361 SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLV 403
           SN DMG LIE+RR WDA++  GGSRIPGHWVQP PPA+EIWA+ LV
Sbjct: 361 SNIDMGRLIEIRREWDAYLSAGGSRIPGHWVQPSPPANEIWASCLV 374

[Close]

BLAST of Carg20972 vs. Swiss-Prot
Match: sp|Q8VYD3|U1159_ARATH (U11/U12 small nuclear ribonucleoprotein 59 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP59 PE=2 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 3.7e-83
Identity = 196/406 (48.28%), Postives = 246/406 (60.59%), Query Frame = 0


Query: 1   MNPVPHQFAAQPPRFLMPPPNQPPFCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60
           MNP   Q    P  +    P  PP C  FW+  N+ D+L+ LQD+L+LAKSM+KELE L 
Sbjct: 1   MNPANFQPPNPPFHWAPMLPPDPPRCGMFWNTKNITDQLKQLQDTLNLAKSMEKELEALK 60

Query: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120
           +IK+ K    S +N   DS +    +YLE +++ L  QE  SV+ A +LM  LR QL PF
Sbjct: 61  MIKDAKG---SVENAVQDSGV----EYLEARKMDLGQQEMLSVDAANSLMSTLRAQLEPF 120

Query: 121 RIDTDESSLRE----AVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADE 180
           R   DE+S  E    AV+L+ K+ K+ RN           AE  AKE E F+Q DREADE
Sbjct: 121 RFVVDENSPWEEKSAAVRLTCKMKKSIRNKLWKKRKRRCAAEMRAKEPERFEQADREADE 180

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ 240
           WR +E+AKD+A RKV++MK I +IKAK E+K+L+ ELELALIVE++QELRS+RI+KLKKQ
Sbjct: 181 WREKEMAKDMANRKVDEMKAIEKIKAKRERKRLEPELELALIVEEMQELRSLRIEKLKKQ 240

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPD 300
           GHFLPEEDDKF E VRAAVE+EE QA +  +T+  +  IA                    
Sbjct: 241 GHFLPEEDDKFFESVRAAVEQEENQAQSLINTETEEHVIAXXXXXXXXXXXXXXXXXXXX 300

Query: 301 SATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYG 360
             T          AAS +       T K P              D  +NLP+E YHYYYG
Sbjct: 301 XXT---------NAASCE------RTMKAP----------DNGCDNISNLPVEVYHYYYG 360

Query: 361 SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLV 403
           SN DMG LIE+RR WDA++  GGSRIPGHWVQP PPA+EIWA+ LV
Sbjct: 361 SNIDMGRLIEIRREWDAYLSAGGSRIPGHWVQPSPPANEIWASCLV 374

[Close]

BLAST of Carg20972 vs. TrEMBL
Match: tr|A0A1S3AVD0|A0A1S3AVD0_CUCME (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483235 PE=4 SV=1)

HSP 1 Score: 638.6 bits (1646), Expect = 9.2e-180
Identity = 348/407 (85.50%), Postives = 365/407 (89.68%), Query Frame = 0


Query: 1   MNPVPHQFAAQPPRFLMPPPNQP--PFCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEM 60
           MN VPHQF  Q P F +PPPN P     SSFWDNLNVRDRLRDLQ++LDLAKSMQKELEM
Sbjct: 1   MNSVPHQFTPQRPWFPVPPPNPPLSSSSSSFWDNLNVRDRLRDLQETLDLAKSMQKELEM 60

Query: 61  LTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLH 120
           L +IKEGK SEQSAD+LP  SSIGEF DYL+D+RISLELQESRSVE AA LM++LR QL 
Sbjct: 61  LMLIKEGKLSEQSADSLPNGSSIGEFCDYLKDRRISLELQESRSVEAAAGLMEKLRAQLQ 120

Query: 121 PFRIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEWR 180
           PFR+DTDESSL EAV+LS KLSKAKRN           AESLAKERESFDQVD EADEWR
Sbjct: 121 PFRLDTDESSLWEAVRLSGKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDMEADEWR 180

Query: 181 AREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGH 240
           AREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGH
Sbjct: 181 AREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGH 240

Query: 241 FLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPDSA 300
           FLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKT+P+Y PESRDPDSA
Sbjct: 241 FLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTY-PESRDPDSA 300

Query: 301 TERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSN 360
           T+RSEER DQR+A  DDKVSNTSTNKEPGKQFGEVQG+GR YDYAANLPMEFYHYYYGSN
Sbjct: 301 TDRSEERIDQRSAGADDKVSNTSTNKEPGKQFGEVQGYGRMYDYAANLPMEFYHYYYGSN 360

Query: 361 TDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 406
           TDMGTLIEVRRSWDAFIRPGGSRIPGHWV+PPPPADEIWAAYLV  K
Sbjct: 361 TDMGTLIEVRRSWDAFIRPGGSRIPGHWVEPPPPADEIWAAYLVPQK 406

[Close]

BLAST of Carg20972 vs. TrEMBL
Match: tr|A0A0A0L417|A0A0A0L417_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121010 PE=4 SV=1)

HSP 1 Score: 614.0 bits (1582), Expect = 2.4e-172
Identity = 336/409 (82.15%), Postives = 357/409 (87.29%), Query Frame = 0


Query: 1   MNPVPHQFAAQPPRFLMP----PPNQPPFCSSFWDNLNVRDRLRDLQDSLDLAKSMQKEL 60
           MNPVPHQF  Q P F +P                DNLNVRDRLR+LQD+L+LAKSMQKEL
Sbjct: 1   MNPVPHQFTPQRPWFPVPXXXXXXXXXXXXXXXXDNLNVRDRLRELQDTLNLAKSMQKEL 60

Query: 61  EMLTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQ 120
           EML ++KE K SEQS D+LP  SSIGEF DYLED+RISLELQESRSVE AA LM++LR Q
Sbjct: 61  EMLMLVKEAKLSEQSTDSLPNGSSIGEFCDYLEDRRISLELQESRSVEAAAGLMEKLRAQ 120

Query: 121 LHPFRIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADE 180
           LHPFR+DTDESSL EAV+LS KLSKAKRN           AESLAKERESFDQVD EADE
Sbjct: 121 LHPFRLDTDESSLWEAVRLSGKLSKAKRNKQWRKRKRKRVAESLAKERESFDQVDLEADE 180

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ 240
           WRAREIAKDIAKRKVEKM EIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ
Sbjct: 181 WRAREIAKDIAKRKVEKMNEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ 240

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPD 300
           GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKT+P+Y PESRDPD
Sbjct: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTY-PESRDPD 300

Query: 301 SATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYG 360
           SAT+RSEERNDQR+A  D+KVSNTSTNKEPGKQFGE+QG+GR YDYAANLPMEFYHYYYG
Sbjct: 301 SATDRSEERNDQRSAGADEKVSNTSTNKEPGKQFGELQGYGRMYDYAANLPMEFYHYYYG 360

Query: 361 SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 406
           SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWV+PPPP+DEIWAAYLV  K
Sbjct: 361 SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVEPPPPSDEIWAAYLVPQK 408

[Close]

BLAST of Carg20972 vs. TrEMBL
Match: tr|A0A1S3AV88|A0A1S3AV88_CUCME (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483235 PE=4 SV=1)

HSP 1 Score: 559.7 bits (1441), Expect = 5.4e-156
Identity = 304/348 (87.36%), Postives = 318/348 (91.38%), Query Frame = 0


Query: 58  MLTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQL 117
           ML +IKEGK SEQSAD+LP  SSIGEF DYL+D+RISLELQESRSVE AA LM++LR QL
Sbjct: 1   MLMLIKEGKLSEQSADSLPNGSSIGEFCDYLKDRRISLELQESRSVEAAAGLMEKLRAQL 60

Query: 118 HPFRIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEW 177
            PFR+DTDESSL EAV+LS KLSKAKRN           AESLAKERESFDQVD EADEW
Sbjct: 61  QPFRLDTDESSLWEAVRLSGKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDMEADEW 120

Query: 178 RAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQG 237
           RAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQG
Sbjct: 121 RAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQG 180

Query: 238 HFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPDS 297
           HFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKT+P+Y PESRDPDS
Sbjct: 181 HFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTY-PESRDPDS 240

Query: 298 ATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGS 357
           AT+RSEER DQR+A  DDKVSNTSTNKEPGKQFGEVQG+GR YDYAANLPMEFYHYYYGS
Sbjct: 241 ATDRSEERIDQRSAGADDKVSNTSTNKEPGKQFGEVQGYGRMYDYAANLPMEFYHYYYGS 300

Query: 358 NTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 406
           NTDMGTLIEVRRSWDAFIRPGGSRIPGHWV+PPPPADEIWAAYLV  K
Sbjct: 301 NTDMGTLIEVRRSWDAFIRPGGSRIPGHWVEPPPPADEIWAAYLVPQK 347

[Close]

BLAST of Carg20972 vs. TrEMBL
Match: tr|A0A1S4DT14|A0A1S4DT14_CUCME (U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483235 PE=4 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 7.1e-156
Identity = 313/369 (84.82%), Postives = 329/369 (89.16%), Query Frame = 0


Query: 1   MNPVPHQFAAQPPRFLMPPPNQP--PFCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEM 60
           MN VPHQF  Q P F +PPPN P     SSFWDNLNVRDRLRDLQ++LDLAKSMQKELEM
Sbjct: 1   MNSVPHQFTPQRPWFPVPPPNPPLSSSSSSFWDNLNVRDRLRDLQETLDLAKSMQKELEM 60

Query: 61  LTIIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLH 120
           L +IKEGK SEQSAD+LP  SSIGEF DYL+D+RISLELQESRSVE AA LM++LR QL 
Sbjct: 61  LMLIKEGKLSEQSADSLPNGSSIGEFCDYLKDRRISLELQESRSVEAAAGLMEKLRAQLQ 120

Query: 121 PFRIDTDESSLREAVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADEWR 180
           PFR+DTDESSL EAV+LS KLSKAKRN           AESLAKERESFDQVD EADEWR
Sbjct: 121 PFRLDTDESSLWEAVRLSGKLSKAKRNKQWRKRKRKRIAESLAKERESFDQVDMEADEWR 180

Query: 181 AREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGH 240
           AREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGH
Sbjct: 181 AREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQGH 240

Query: 241 FLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPDSA 300
           FLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKT+P+Y PESRDPDSA
Sbjct: 241 FLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTVPTY-PESRDPDSA 300

Query: 301 TERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYGSN 360
           T+RSEER DQR+A  DDKVSNTSTNKEPGKQFGEVQG+GR YDYAANLPMEFYHYYYGSN
Sbjct: 301 TDRSEERIDQRSAGADDKVSNTSTNKEPGKQFGEVQGYGRMYDYAANLPMEFYHYYYGSN 360

Query: 361 TDMGTLIEV 368
           TDMGTLIEV
Sbjct: 361 TDMGTLIEV 368

[Close]

BLAST of Carg20972 vs. TrEMBL
Match: tr|A0A0D2PS52|A0A0D2PS52_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G158000 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.1e-127
Identity = 266/409 (65.04%), Postives = 305/409 (74.57%), Query Frame = 0


Query: 1   MNPVPHQFAAQPPRFLMPPPNQPPFCSSFWDNLNVRDRLRDLQDSLDLAKSMQKELEMLT 60
           MNPV  Q A  PP F M PP +PP  S+FW+  NVRDRLR+LQD+L+LA ++QKELE+LT
Sbjct: 1   MNPVHFQPAPPPPWFPMLPP-EPPNSSTFWETRNVRDRLRELQDTLNLANAVQKELEILT 60

Query: 61  IIKEGKSSEQSADNLPYDSSIGEFSDYLEDKRISLELQESRSVEVAAALMKRLREQLHPF 120
           +IK+G            D S+ EF  YLED+RI LE QE  SVE A ALM +LR QL PF
Sbjct: 61  MIKDGS----------MDPSVSEFLKYLEDRRIDLETQELLSVEAANALMSKLRAQLEPF 120

Query: 121 RIDTDESSLRE----AVKLSTKLSKAKRNXXXXXXXXXXXAESLAKERESFDQVDREADE 180
           R   DE    E      +L+ K+ K+KRN           AE LAKE E FDQ DREADE
Sbjct: 121 RYVADEGIPWEEKSAVARLTNKIKKSKRNNLWRKRKRKRIAELLAKEHEQFDQADREADE 180

Query: 181 WRAREIAKDIAKRKVEKMKEIARIKAKEEKKKLDSELELALIVEKLQELRSIRIQKLKKQ 240
           WRAREIAKDIA RKVEKMKEIA++KAKEEKK+L+SELEL L+VEKLQELRS+RIQKLKKQ
Sbjct: 181 WRAREIAKDIASRKVEKMKEIAKLKAKEEKKRLESELELVLMVEKLQELRSMRIQKLKKQ 240

Query: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEVSRKTIPSYNPESRDPD 300
           GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAE +RK   +  P S DP 
Sbjct: 241 GHFLPEEDDKFLEKVRAAVEEEERQALAAADTDAAKDAIATAEETRKATQNQRPLSNDPM 300

Query: 301 SATERSEERNDQRAASVDDKVSNTSTNKEPGKQFGEVQGFGRAYDYAANLPMEFYHYYYG 360
           +    ++ER DQ   + D K S T T+ E GK   E  G+ RAYD   NLP+EFYHYY+G
Sbjct: 301 TDQHENKERKDQITPNEDKKGSGTVTDMESGKNKLEGHGYTRAYDPLTNLPIEFYHYYHG 360

Query: 361 SNTDMGTLIEVRRSWDAFIRPGGSRIPGHWVQPPPPADEIWAAYLVRPK 406
           SN+DMGTLIEVRR+WDA+IRPGGSRIPGHWVQPPPPAD+IWA+YLVRPK
Sbjct: 361 SNSDMGTLIEVRRTWDAYIRPGGSRIPGHWVQPPPPADDIWASYLVRPK 398

The following BLAST results are available for this feature:

BLAST of Carg20972 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526863.1	8.3e-209	99.26	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucurbita pep...	[more]
XP_022924846.1	1.2e-207	99.01	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucurbita mos...	[more]
XP_022980475.1	1.3e-206	98.52	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 [Cucurbita max...	[more]
XP_023526861.1	1.7e-206	97.80	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucurbita pep...	[more]
XP_022924843.1	2.5e-205	97.56	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Cucurbita mos...	[more]

BLAST of Carg20972 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46200.1	2.1e-84	48.28	unknown protein	[more]

BLAST of Carg20972 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VYD3\|U1159_ARATH	3.7e-83	48.28	U11/U12 small nuclear ribonucleoprotein 59 kDa protein OS=Arabidopsis thaliana O...	[more]

BLAST of Carg20972 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AVD0\|A0A1S3AVD0_CUCME	9.2e-180	85.50	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 OS=Cucumis mel...	[more]
tr\|A0A0A0L417\|A0A0A0L417_CUCSA	2.4e-172	82.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G121010 PE=4 SV=1	[more]
tr\|A0A1S3AV88\|A0A1S3AV88_CUCME	5.4e-156	87.36	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X3 OS=Cucumis mel...	[more]
tr\|A0A1S4DT14\|A0A1S4DT14_CUCME	7.1e-156	84.82	U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X2 OS=Cucumis mel...	[more]
tr\|A0A0D2PS52\|A0A0D2PS52_GOSRA	1.1e-127	65.04	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G158000 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR031974	PDCD7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20972-RA	Carg20972-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 160..180
None	No IPR available	COILS	Coil	Coil	coord: 248..268
None	No IPR available	COILS	Coil	Coil	coord: 39..59
None	No IPR available	COILS	Coil	Coil	coord: 188..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..312
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 313..328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..331
IPR031974	Programmed cell death protein 7	PFAM	PF16021	PDCD7	coord: 102..401 e-value: 1.1E-19 score: 70.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20972	Csa3G121010	Cucumber (Chinese Long) v2	carcuB0522
Carg20972	MELO3C006074	Melon (DHL92) v3.5.1	carmeB0497
Carg20972	CSPI03G08410	Wild cucumber (PI 183967)	carcpiB0529
Carg20972	Cucsa.258780	Cucumber (Gy14) v1	carcgyB0564
Carg20972	Lsi05G020780	Bottle gourd (USVL1VR-Ls)	carlsiB445
Carg20972	Cp4.1LG03g16250	Cucurbita pepo (Zucchini)	carcpeB0691
Carg20972	CsGy3G008530	Cucumber (Gy14) v2	carcgybB0499
Carg20972	MELO3C006074.2	Melon (DHL92) v3.6.1	carmedB0503
Carg20972	CsaV3_3G008530	Cucumber (Chinese Long) v3	carcucB0528

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20972	Silver-seed gourd	carcarB477
Carg20972	Cucumber (Gy14) v1	carcgyB0563
Carg20972	Cucurbita maxima (Rimu)	carcmaB0682
Carg20972	Cucurbita maxima (Rimu)	carcmaB0683
Carg20972	Cucurbita maxima (Rimu)	carcmaB0685
Carg20972	Cucurbita moschata (Rifu)	carcmoB0664
Carg20972	Cucurbita moschata (Rifu)	carcmoB0665
Carg20972	Cucurbita pepo (Zucchini)	carcpeB0690
Carg20972	Cucurbita pepo (Zucchini)	carcpeB0693
Carg20972	Wild cucumber (PI 183967)	carcpiB0530
Carg20972	Bottle gourd (USVL1VR-Ls)	carlsiB444
Carg20972	Melon (DHL92) v3.5.1	carmeB0496
Carg20972	Melon (DHL92) v3.5.1	carmeB0498
Carg20972	Melon (DHL92) v3.6.1	carmedB0502
Carg20972	Watermelon (Charleston Gray)	carwcgB0474
Carg20972	Watermelon (Charleston Gray)	carwcgB0475
Carg20972	Watermelon (Charleston Gray)	carwcgB0476
Carg20972	Watermelon (97103) v1	carwmB0487
Carg20972	Watermelon (97103) v1	carwmB0488
Carg20972	Watermelon (97103) v2	carwmbB0513