Carg20946 (gene) Silver-seed gourd

NameCarg20946
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionLOB domain-containing protein 36-like
LocationCucurbita_argyrosperma_scaffold_141 : 800443 .. 801207 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGCGACCTGTACAATGCCAAAAAGGAACTGGCCAGTTATGTTGGCCCTCAAGCAATGATTCCAATTCTTCAGCCTTCCACTGCCATTATGACCACTAACCCTCAAGGACCCGTCACTAGCCCTTCCTCCTCCGTCCTACTTCCTTACAATATGTCCCCCATGTTTGGGATTCCCTCTTCTGGCGGCGGTGGCTCCTCCCAACAGATGCTCATTCGTGAGTCGCCCCATCAACAACAACAACATCAACACCAGATACAGCAGCAGCAGCAGCAGTTGTTTGAGGCTCAGCAATTGGCTGCGGCAGTAGCGGCCAGAGAGCAGCAAGAAATGTTCAGAGCGTACGAGCAGAAGCAAACCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCATTCTCCTTCCCAACGCCAACACGAGCTCTTGAGGTTCAATGGGTTTGACCCGGCTGGTGTTGGTGCCGGTGCCGGTGCTGGTGGGTTTAATAATCAGATGAATTCGCCTTCAGATTTGACATTGGGAACTTTTCCCGACAATAGCTACCAAATTCAAACGCAACCAGAACACTCCCATTCCCATTCCCATTCCCACCATCATCATCCGCTTCAAGTACAGCTATTTCCTCAACCTCAGCAAACTCAGCTTGACCAATCACAGCAACAGCAGCAGCAGCCCCATCCACACCGATCGCAGCAAATCCACAAGCCTGAAGCTACTGCAGATGATGGTAGGAATATTAACATTGGACCCTCTTGTTGA

mRNA sequence

ATGCAAAGCGACCTGTACAATGCCAAAAAGGAACTGGCCAGTTATGTTGGCCCTCAAGCAATGATTCCAATTCTTCAGCCTTCCACTGCCATTATGACCACTAACCCTCAAGGACCCGTCACTAGCCCTTCCTCCTCCGTCCTACTTCCTTACAATATGTCCCCCATGTTTGGGATTCCCTCTTCTGGCGGCGGTGGCTCCTCCCAACAGATGCTCATTCGTGAGTCGCCCCATCAACAACAACAACATCAACACCAGATACAGCAGCAGCAGCAGCAGTTGTTTGAGGCTCAGCAATTGGCTGCGGCAGTAGCGGCCAGAGAGCAGCAAGAAATGTTCAGAGCGTACGAGCAGAAGCAAACCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCATTCTCCTTCCCAACGCCAACACGAGCTCTTGAGGTTCAATGGGTTTGACCCGGCTGGTGTTGGTGCCGGTGCCGGTGCTGGTGGGTTTAATAATCAGATGAATTCGCCTTCAGATTTGACATTGGGAACTTTTCCCGACAATAGCTACCAAATTCAAACGCAACCAGAACACTCCCATTCCCATTCCCATTCCCACCATCATCATCCGCTTCAAGTACAGCTATTTCCTCAACCTCAGCAAACTCAGCTTGACCAATCACAGCAACAGCAGCAGCAGCCCCATCCACACCGATCGCAGCAAATCCACAAGCCTGAAGCTACTGCAGATGATGGTAGGAATATTAACATTGGACCCTCTTGTTGA

Coding sequence (CDS)

ATGCAAAGCGACCTGTACAATGCCAAAAAGGAACTGGCCAGTTATGTTGGCCCTCAAGCAATGATTCCAATTCTTCAGCCTTCCACTGCCATTATGACCACTAACCCTCAAGGACCCGTCACTAGCCCTTCCTCCTCCGTCCTACTTCCTTACAATATGTCCCCCATGTTTGGGATTCCCTCTTCTGGCGGCGGTGGCTCCTCCCAACAGATGCTCATTCGTGAGTCGCCCCATCAACAACAACAACATCAACACCAGATACAGCAGCAGCAGCAGCAGTTGTTTGAGGCTCAGCAATTGGCTGCGGCAGTAGCGGCCAGAGAGCAGCAAGAAATGTTCAGAGCGTACGAGCAGAAGCAAACCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCATTCTCCTTCCCAACGCCAACACGAGCTCTTGAGGTTCAATGGGTTTGACCCGGCTGGTGTTGGTGCCGGTGCCGGTGCTGGTGGGTTTAATAATCAGATGAATTCGCCTTCAGATTTGACATTGGGAACTTTTCCCGACAATAGCTACCAAATTCAAACGCAACCAGAACACTCCCATTCCCATTCCCATTCCCACCATCATCATCCGCTTCAAGTACAGCTATTTCCTCAACCTCAGCAAACTCAGCTTGACCAATCACAGCAACAGCAGCAGCAGCCCCATCCACACCGATCGCAGCAAATCCACAAGCCTGAAGCTACTGCAGATGATGGTAGGAATATTAACATTGGACCCTCTTGTTGA

Protein sequence

MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIPSSGGGGSSQQMLIRESPHQQQQHQHQIQQQQQQLFEAQQLAAAVAAREQQEMFRAYEQKQTQQQQQQQQQQQQHSPSQRQHELLRFNGFDPAGVGAGAGAGGFNNQMNSPSDLTLGTFPDNSYQIQTQPEHSHSHSHSHHHHPLQVQLFPQPQQTQLDQSQQQQQQPHPHRSQQIHKPEATADDGRNINIGPSC
BLAST of Carg20946 vs. NCBI nr
Match: XP_022927995.1 (LOB domain-containing protein 36-like [Cucurbita moschata])

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-27
Identity = 253/256 (98.83%), Postives = 253/256 (98.83%), Query Frame = 0

Query: 1   MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP 60
           MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP
Sbjct: 96  MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP 155

Query: 61  SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 156 SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 215

Query: 121 XXXXXXXXXXXXXXXXXXXQHELLRFNGFDPAG--VXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXQHELLRFNGFDPAG   XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 216 XXXXXXXXXXXXXXXXXXXQHELLRFNGFDPAGXXXXXXXXXXXXXXXXXXXXXXXXXXX 275

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIHKP 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIHKP
Sbjct: 276 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIHKP 335

Query: 241 EATADDGRNINIGPSC 255
           EATADDGRNINIGPSC
Sbjct: 336 EATADDGRNINIGPSC 351

BLAST of Carg20946 vs. NCBI nr
Match: XP_022971742.1 (LOB domain-containing protein 36-like [Cucurbita maxima] >XP_022971743.1 LOB domain-containing protein 36-like [Cucurbita maxima])

HSP 1 Score: 127.1 bits (318), Expect = 8.5e-26
Identity = 247/258 (95.74%), Postives = 248/258 (96.12%), Query Frame = 0

Query: 1   MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP 60
           MQSDLYNAKKELASYVGPQAMIPILQPSTAIMT+NPQGPVTSPSSSVLLPYNMSPMFGIP
Sbjct: 96  MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTSNPQGPVTSPSSSVLLPYNMSPMFGIP 155

Query: 61  SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           S      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 156 S------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 215

Query: 121 XXXXXXXXXXXXXXXXXXXQHELLRFNGFDPAGV----XXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXQHELLRFNGFDPAGV    XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 216 XXXXXXXXXXXXXXXXXXXQHELLRFNGFDPAGVXXXXXXXXXXXXXXXXXXXXXXXXXX 275

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIH 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIH
Sbjct: 276 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIH 335

Query: 241 KPEATADDGRNINIGPSC 255
           KPEATADDGRNINIGPSC
Sbjct: 336 KPEATADDGRNINIGPSC 347

BLAST of Carg20946 vs. NCBI nr
Match: XP_023513194.1 (LOB domain-containing protein 36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.3 bits (303), Expect = 4.7e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1   MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP 60
           MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP
Sbjct: 96  MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP 155

Query: 61  S 62
           S
Sbjct: 156 S 156

BLAST of Carg20946 vs. NCBI nr
Match: XP_015890048.1 (LOB domain-containing protein 36-like [Ziziphus jujuba] >XP_015868740.1 LOB domain-containing protein 36-like [Ziziphus jujuba])

HSP 1 Score: 73.9 bits (180), Expect = 8.6e-10
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 1   MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP 60
           +QSDLYNAKKELA+Y+GPQA+  ILQP T +  T+P      PSSS +LPYNMSPM GIP
Sbjct: 96  VQSDLYNAKKELATYLGPQALHQILQPPTYLPQTHP-----GPSSSSVLPYNMSPMMGIP 151

Query: 61  S 62
           +
Sbjct: 156 T 151

BLAST of Carg20946 vs. NCBI nr
Match: XP_018856691.1 (PREDICTED: LOB domain-containing protein 36-like [Juglans regia])

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-09
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 1   MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP 60
           +Q+DL+NAKKELASY+GPQAM+ ILQP   +  T  Q P  +PSSS +LPYNMSPM GIP
Sbjct: 96  VQTDLFNAKKELASYIGPQAMLTILQPPGYM--TQQQHP-GNPSSSAVLPYNMSPMLGIP 153

Query: 61  S 62
           +
Sbjct: 156 T 153

BLAST of Carg20946 vs. TAIR10
Match: AT5G66870.1 (ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 45.8 bits (107), Expect = 4.5e-05
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0

Query: 4   DLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQ 38
           DL NAKKELA+YVGPQAM+PILQP    M+  PQ
Sbjct: 99  DLENAKKELATYVGPQAMLPILQPH--FMSLPPQ 130

BLAST of Carg20946 vs. Swiss-Prot
Match: sp|Q9FKZ3|LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.2e-04
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = 0

Query: 4   DLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQ 38
           DL NAKKELA+YVGPQAM+PILQP    M+  PQ
Sbjct: 99  DLENAKKELATYVGPQAMLPILQPH--FMSLPPQ 130

BLAST of Carg20946 vs. TrEMBL
Match: tr|A0A2I4HKK4|A0A2I4HKK4_9ROSI (LOB domain-containing protein 36-like OS=Juglans regia OX=51240 GN=LOC109018950 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.8e-09
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0

Query: 1   MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP 60
           +Q+DL+NAKKELASY+GPQAM+ ILQP   +  T  Q P  +PSSS +LPYNMSPM GIP
Sbjct: 96  VQTDLFNAKKELASYIGPQAMLTILQPPGYM--TQQQHP-GNPSSSAVLPYNMSPMLGIP 153

Query: 61  S 62
           +
Sbjct: 156 T 153

BLAST of Carg20946 vs. TrEMBL
Match: tr|M5W6J8|M5W6J8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G137900 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1   MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP 60
           +Q+DLYNAKKELA+Y+GPQAM+ ILQP    M    QG   + SSS + PY MSPM GIP
Sbjct: 96  VQADLYNAKKELATYMGPQAMLSILQPPPTYMPQQLQG---NASSSAVSPYTMSPMMGIP 153

Query: 61  S 62
           +
Sbjct: 156 T 153

BLAST of Carg20946 vs. TrEMBL
Match: tr|A0A2P4MRQ3|A0A2P4MRQ3_QUESU (Lob domain-containing protein 36 OS=Quercus suber OX=58331 GN=CFP56_35987 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.1e-08
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 1   MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSS-VLLPYNMSP-MFG 60
           +Q+DLYNAKKELA+Y+GPQAM+PILQP   I   +  G   +PSSS V LPYNMSP M G
Sbjct: 96  VQTDLYNAKKELATYIGPQAMLPILQPPGYIPQQHHPG---NPSSSGVALPYNMSPAMMG 155

Query: 61  IPS 62
           IP+
Sbjct: 156 IPT 155

BLAST of Carg20946 vs. TrEMBL
Match: tr|A0A2R6R6B4|A0A2R6R6B4_ACTCH (LOB domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10608 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.1e-08
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 1   MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP 60
           +Q DLYNAKKELA+Y+GP A +PILQ        NP     +PSSS ++PYNMSPM G+P
Sbjct: 96  VQVDLYNAKKELATYIGPSATLPILQ--------NPSFMGNNPSSSSVIPYNMSPMLGLP 148

Query: 61  S 62
           S
Sbjct: 156 S 148

BLAST of Carg20946 vs. TrEMBL
Match: tr|A0A2N9FMU2|A0A2N9FMU2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19988 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.3e-08
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 1   MQSDLYNAKKELASYVGPQAMIPILQPSTAIMTTNPQGPVTSPSSSVLLPYNMSPMFGIP 60
           +Q+DL+NAKKELA+Y+GPQAM+PILQ    I     QG     SS+ ++PYN+SPM GIP
Sbjct: 96  VQTDLFNAKKELATYIGPQAMLPILQAPAFIPQQQHQG--NPSSSAAVMPYNVSPMLGIP 154

Query: 61  S 62
           +
Sbjct: 156 T 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022927995.13.5e-2798.83LOB domain-containing protein 36-like [Cucurbita moschata][more]
XP_022971742.18.5e-2695.74LOB domain-containing protein 36-like [Cucurbita maxima] >XP_022971743.1 LOB dom... [more]
XP_023513194.14.7e-24100.00LOB domain-containing protein 36-like [Cucurbita pepo subsp. pepo][more]
XP_015890048.18.6e-1063.93LOB domain-containing protein 36-like [Ziziphus jujuba] >XP_015868740.1 LOB doma... [more]
XP_018856691.14.2e-0963.93PREDICTED: LOB domain-containing protein 36-like [Juglans regia][more]
Match NameE-valueIdentityDescription
AT5G66870.14.5e-0570.59ASYMMETRIC LEAVES 2-like 1[more]
Match NameE-valueIdentityDescription
sp|Q9FKZ3|LBD36_ARATH8.2e-0470.59LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 S... [more]
Match NameE-valueIdentityDescription
tr|A0A2I4HKK4|A0A2I4HKK4_9ROSI2.8e-0963.93LOB domain-containing protein 36-like OS=Juglans regia OX=51240 GN=LOC109018950 ... [more]
tr|M5W6J8|M5W6J8_PRUPE3.1e-0859.02Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G137900 PE=4 SV=1[more]
tr|A0A2P4MRQ3|A0A2P4MRQ3_QUESU4.1e-0863.49Lob domain-containing protein 36 OS=Quercus suber OX=58331 GN=CFP56_35987 PE=4 S... [more]
tr|A0A2R6R6B4|A0A2R6R6B4_ACTCH4.1e-0857.38LOB domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 G... [more]
tr|A0A2N9FMU2|A0A2N9FMU2_FAGSY5.3e-0855.74Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19988 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20946-RACarg20946-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 80..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..254
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..142
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..231
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 1..237
NoneNo IPR availablePANTHERPTHR31301:SF22SUBFAMILY NOT NAMEDcoord: 1..237