Carg20938 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATCGGAAGAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCCTAAAGGTATTTTTAGACCGCTTCGTCTTTTTCCATTGATAATTCGTCATTGTGTTGAGATTCGAGTTCAAAGTCGAAGTGTCGATTGAGAGAAATGAAATCGATGATTAGATAGGTTGTTGGGAAATTCATAGGGTATTGGATCTCTTAATTATCTGATTTGAAACATGTTCTGTCGCAGAGAATAAAAATTTAGATTCGTTAACACTTAATGATTGCAAAGCTTATTTACGGGAGAATAGGCTAAGAATAGCGGGGACTAAAGCCGTCTGTATTCAAAGAGTCCTGGAACATTGGAGGTACGTCGATCCTTCATCCTTAAACTCAAGATACACATCTTAATATTGCGTTCAATTAGGAAATTTATGAAGTTTCGTCATCTAGTCCGATCGCTGAATATTTGAAATTGTTAGTACTTTTTCATGATGGAAATCTGCTATGTACTCATCTATGGAAGTCTTCTGATATTTAGAGAAGCGACTATTGAGTGTTTCGGTAAATGTGGATTGTTATCAATTATGATTCTATAGACTTTTATGTTGTGAAATTGAGTTTTCCTTGTTCCTCAATGGATTTTGGAGCCTTTAACTTCTAGTTCTGCATTGATACATATCAAACCATAAGGCAGCAAAACATAATTTGGGTTTGGTACTGTTTTCCATTTGTTGCTGATAAATCTTGATTAACTGAACTGTATTCTACGTCTTCCTTTCTGTTGTAATCACTTTGGGTCTCTGCAAAGTTGCAACATTATATAGAAGTTATTGAGCAAAAAGGGAGGAGATTCTGAAAGAATAATATGCCAGTTATTCAATTCTTCACAAGGAGTTAAATATACAACAGGTATTTGGCACAACTTGTGATATCCCACATTAGTTGGAGCGGGGAACGAAACATTTCTTATAAGGGTGTGGAAACTTCTCCTTAGTAATAAACACATTTTAAAACCGTGAAGCTAAAGGCGATACGTAAGAGGCCAAAATGGACAATATTTGCTAGCGGTGGCTATTACAAATGGTATCAAAGCAAGGCACCGAGCGGTGTGCTAGCGAGGACGTTGGGCCCCAAAGGGGGTGGATTGTGAGATCCTACATCGTTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGAAACGTCTCCATAGTAGACACGTTTCAAACCATGAAACTAACGGCGATACATAACGGGCTAAAGCGGACAATATCTGTTAGCGGTGACTATTACACAACTACTCCTAACAAAACATCTTGGCTCTCTTCTTTTTCTCCCAACTCAGGATGAAGGATGGAAATGGTGAAGCGCACTATCCAAGGTCATCCTTTGTTGTCAATTGTACTGGTAATTTCTATATACATTAGTCATAGTATTTTCTTTGATCACTCTTTTAGTGGCTGTAATTATTCTATTAAAACATCAATGCAGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTACTCAAACAAGTTTCTCTTCCACCACTAGTCTTGTGTTAGATATTTTAGATTTGCACTCCTAATTCTTGTAGCTTAATTTTTAACAGGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACTGTAAGGCTGTTTTTTCTGTTCTAGCAATCATTTTCTCATATCGTAATTCAAATTGGTTGTGCATTATTAGTATCATACTTTGTAATATGCTCAATATGTTTACATCTAATATTCATTTGCGATTCATAAATATTTTTTCATTTTCGATTCATATTTCCAACGCTTGTGACTATAACGTGCTAGGTTGAAGTTTTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGGTAAGTTCTCTACGTACATAA ATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATCGGAAGAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCCTAAAGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACTGTTGAAGTTTTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGGTAAGTTCTCTACGTACATAA ATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATCGGAAGAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCCTAAAGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACTGTTGAAGTTTTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGGTAAGTTCTCTACGTACATAA MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPKGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRVSSLRT
BLAST of Carg20938 vs. NCBI nr
Match: XP_022971663.1 (zinc finger CCCH domain-containing protein 62 isoform X2 [Cucurbita maxima]) HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of Carg20938 vs. NCBI nr
Match: XP_022927980.1 (zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata]) HSP 1 Score: 177.2 bits (448), Expect = 4.2e-41 Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of Carg20938 vs. NCBI nr
Match: XP_022971662.1 (zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima]) HSP 1 Score: 177.2 bits (448), Expect = 4.2e-41 Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of Carg20938 vs. NCBI nr
Match: XP_023512636.1 (zinc finger CCCH domain-containing protein 62 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40 Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0
BLAST of Carg20938 vs. NCBI nr
Match: XP_016902186.1 (PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X3 [Cucumis melo]) HSP 1 Score: 172.9 bits (437), Expect = 7.9e-40 Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0
BLAST of Carg20938 vs. TAIR10
Match: AT5G66840.1 (SAP domain-containing protein) HSP 1 Score: 136.7 bits (343), Expect = 1.1e-32 Identity = 61/87 (70.11%), Postives = 76/87 (87.36%), Query Frame = 0
BLAST of Carg20938 vs. Swiss-Prot
Match: sp|Q338N2|C3H62_ORYSJ (Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0391300 PE=4 SV=2) HSP 1 Score: 111.7 bits (278), Expect = 7.1e-24 Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 0
BLAST of Carg20938 vs. TrEMBL
Match: tr|A0A1S4E1T3|A0A1S4E1T3_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 5.3e-40 Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0
BLAST of Carg20938 vs. TrEMBL
Match: tr|A0A1S4E1S9|A0A1S4E1S9_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 5.3e-40 Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0
BLAST of Carg20938 vs. TrEMBL
Match: tr|A0A1S4E2I3|A0A1S4E2I3_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 3.4e-39 Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0
BLAST of Carg20938 vs. TrEMBL
Match: tr|A0A0A0LQ19|A0A0A0LQ19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292810 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 5.8e-39 Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0
BLAST of Carg20938 vs. TrEMBL
Match: tr|A5BS47|A5BS47_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044432 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 5.1e-35 Identity = 71/86 (82.56%), Postives = 82/86 (95.35%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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