Carg20938 (gene) Silver-seed gourd

NameCarg20938
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionZinc finger CCCH domain-containing protein 62
LocationCucurbita_argyrosperma_scaffold_141 : 669033 .. 671174 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATCGGAAGAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCCTAAAGGTATTTTTAGACCGCTTCGTCTTTTTCCATTGATAATTCGTCATTGTGTTGAGATTCGAGTTCAAAGTCGAAGTGTCGATTGAGAGAAATGAAATCGATGATTAGATAGGTTGTTGGGAAATTCATAGGGTATTGGATCTCTTAATTATCTGATTTGAAACATGTTCTGTCGCAGAGAATAAAAATTTAGATTCGTTAACACTTAATGATTGCAAAGCTTATTTACGGGAGAATAGGCTAAGAATAGCGGGGACTAAAGCCGTCTGTATTCAAAGAGTCCTGGAACATTGGAGGTACGTCGATCCTTCATCCTTAAACTCAAGATACACATCTTAATATTGCGTTCAATTAGGAAATTTATGAAGTTTCGTCATCTAGTCCGATCGCTGAATATTTGAAATTGTTAGTACTTTTTCATGATGGAAATCTGCTATGTACTCATCTATGGAAGTCTTCTGATATTTAGAGAAGCGACTATTGAGTGTTTCGGTAAATGTGGATTGTTATCAATTATGATTCTATAGACTTTTATGTTGTGAAATTGAGTTTTCCTTGTTCCTCAATGGATTTTGGAGCCTTTAACTTCTAGTTCTGCATTGATACATATCAAACCATAAGGCAGCAAAACATAATTTGGGTTTGGTACTGTTTTCCATTTGTTGCTGATAAATCTTGATTAACTGAACTGTATTCTACGTCTTCCTTTCTGTTGTAATCACTTTGGGTCTCTGCAAAGTTGCAACATTATATAGAAGTTATTGAGCAAAAAGGGAGGAGATTCTGAAAGAATAATATGCCAGTTATTCAATTCTTCACAAGGAGTTAAATATACAACAGGTATTTGGCACAACTTGTGATATCCCACATTAGTTGGAGCGGGGAACGAAACATTTCTTATAAGGGTGTGGAAACTTCTCCTTAGTAATAAACACATTTTAAAACCGTGAAGCTAAAGGCGATACGTAAGAGGCCAAAATGGACAATATTTGCTAGCGGTGGCTATTACAAATGGTATCAAAGCAAGGCACCGAGCGGTGTGCTAGCGAGGACGTTGGGCCCCAAAGGGGGTGGATTGTGAGATCCTACATCGTTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGAAACGTCTCCATAGTAGACACGTTTCAAACCATGAAACTAACGGCGATACATAACGGGCTAAAGCGGACAATATCTGTTAGCGGTGACTATTACACAACTACTCCTAACAAAACATCTTGGCTCTCTTCTTTTTCTCCCAACTCAGGATGAAGGATGGAAATGGTGAAGCGCACTATCCAAGGTCATCCTTTGTTGTCAATTGTACTGGTAATTTCTATATACATTAGTCATAGTATTTTCTTTGATCACTCTTTTAGTGGCTGTAATTATTCTATTAAAACATCAATGCAGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTACTCAAACAAGTTTCTCTTCCACCACTAGTCTTGTGTTAGATATTTTAGATTTGCACTCCTAATTCTTGTAGCTTAATTTTTAACAGGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACTGTAAGGCTGTTTTTTCTGTTCTAGCAATCATTTTCTCATATCGTAATTCAAATTGGTTGTGCATTATTAGTATCATACTTTGTAATATGCTCAATATGTTTACATCTAATATTCATTTGCGATTCATAAATATTTTTTCATTTTCGATTCATATTTCCAACGCTTGTGACTATAACGTGCTAGGTTGAAGTTTTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGGTAAGTTCTCTACGTACATAA

mRNA sequence

ATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATCGGAAGAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCCTAAAGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACTGTTGAAGTTTTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGGTAAGTTCTCTACGTACATAA

Coding sequence (CDS)

ATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATCGGAAGAGGAGTTTGATAATGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCCTAAAGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATGCAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACTGTTGAAGTTTTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGGTAAGTTCTCTACGTACATAA

Protein sequence

MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPKGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRVSSLRT
BLAST of Carg20938 vs. NCBI nr
Match: XP_022971663.1 (zinc finger CCCH domain-containing protein 62 isoform X2 [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 58  GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 117
           GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR
Sbjct: 125 GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 184

Query: 118 GVRKLPPLYPLLVKGRNLYKLRTFRRV 145
           GVRKLPPLYPLLVKGRNLYKLRTFRRV
Sbjct: 185 GVRKLPPLYPLLVKGRNLYKLRTFRRV 211

BLAST of Carg20938 vs. NCBI nr
Match: XP_022927980.1 (zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata])

HSP 1 Score: 177.2 bits (448), Expect = 4.2e-41
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 58  GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 117
           GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR
Sbjct: 118 GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 177

Query: 118 GVRKLPPLYPLLVKGRNLYKLRTFRRV 145
           GVRKLPPLYPLLVKGRNLYKLRTFRR+
Sbjct: 178 GVRKLPPLYPLLVKGRNLYKLRTFRRL 204

BLAST of Carg20938 vs. NCBI nr
Match: XP_022971662.1 (zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 4.2e-41
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 58  GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 117
           GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR
Sbjct: 125 GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 184

Query: 118 GVRKLPPLYPLLVKGRNLYKLRTFRRV 145
           GVRKLPPLYPLLVKGRNLYKLRTFRR+
Sbjct: 185 GVRKLPPLYPLLVKGRNLYKLRTFRRL 211

BLAST of Carg20938 vs. NCBI nr
Match: XP_023512636.1 (zinc finger CCCH domain-containing protein 62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0

Query: 58  GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 117
           GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWS 
Sbjct: 126 GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWST 185

Query: 118 GVRKLPPLYPLLVKGRNLYKLRTFRRV 145
           GVRKLPPLYPLLVKGRNLYKLRTFRR+
Sbjct: 186 GVRKLPPLYPLLVKGRNLYKLRTFRRL 212

BLAST of Carg20938 vs. NCBI nr
Match: XP_016902186.1 (PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X3 [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 7.9e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0

Query: 58  GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 117
           GDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGASKQQHTFTVEVLW R
Sbjct: 177 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWIR 236

Query: 118 GVRKLPPLYPLLVKGRNLYKLRTFRRV 145
           GVRKLPPLYPLLVKGRNLYKLRTFRR+
Sbjct: 237 GVRKLPPLYPLLVKGRNLYKLRTFRRL 263

BLAST of Carg20938 vs. TAIR10
Match: AT5G66840.1 (SAP domain-containing protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-32
Identity = 61/87 (70.11%), Postives = 76/87 (87.36%), Query Frame = 0

Query: 57  KGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWS 116
           KGDVC+GD VLFTQKV+ K++K+ + G ++G+RTVAG+VVKESYG +KQQHTFT+EVLW 
Sbjct: 145 KGDVCKGDIVLFTQKVHHKYEKMKKSGNIMGRRTVAGQVVKESYGTAKQQHTFTIEVLWC 204

Query: 117 RGVRKLPPLYPLLVKGRNLYKLRTFRR 144
            G +KLPPLYPLLVKGRNLY+L T R+
Sbjct: 205 EGTQKLPPLYPLLVKGRNLYRLMTLRQ 231

BLAST of Carg20938 vs. Swiss-Prot
Match: sp|Q338N2|C3H62_ORYSJ (Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0391300 PE=4 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-24
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 57  KGDVCRGDTVLFTQKVYAKFDKVTR--RGGLIGKRTVAGRVVKESYGASKQQHTFTVEVL 116
           +GD C+GD V+F Q +Y +     R  +G L G+RT AGR++KESYG  KQQHTFT+E+L
Sbjct: 186 QGDSCKGDVVVFEQNIYKRKKGAPRGVKGHLCGQRTNAGRIIKESYGTKKQQHTFTIEIL 245

Query: 117 WSRGVRKLPPLYPLLVKGRNLYKLRTFRR 144
           WSRG +  PPL+PLL+KGRNLYK +T R+
Sbjct: 246 WSRGYKPWPPLHPLLIKGRNLYKDKTMRQ 274

BLAST of Carg20938 vs. TrEMBL
Match: tr|A0A1S4E1T3|A0A1S4E1T3_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.3e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0

Query: 58  GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 117
           GDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGASKQQHTFTVEVLW R
Sbjct: 177 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWIR 236

Query: 118 GVRKLPPLYPLLVKGRNLYKLRTFRRV 145
           GVRKLPPLYPLLVKGRNLYKLRTFRR+
Sbjct: 237 GVRKLPPLYPLLVKGRNLYKLRTFRRL 263

BLAST of Carg20938 vs. TrEMBL
Match: tr|A0A1S4E1S9|A0A1S4E1S9_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.3e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 0

Query: 58  GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 117
           GDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGASKQQHTFTVEVLW R
Sbjct: 177 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWIR 236

Query: 118 GVRKLPPLYPLLVKGRNLYKLRTFRRV 145
           GVRKLPPLYPLLVKGRNLYKLRTFRR+
Sbjct: 237 GVRKLPPLYPLLVKGRNLYKLRTFRRL 263

BLAST of Carg20938 vs. TrEMBL
Match: tr|A0A1S4E2I3|A0A1S4E2I3_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.4e-39
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0

Query: 59  DVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRG 118
           DVCRGDTVLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGASKQQHTFTVEVLW RG
Sbjct: 176 DVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWIRG 235

Query: 119 VRKLPPLYPLLVKGRNLYKLRTFRRV 145
           VRKLPPLYPLLVKGRNLYKLRTFRR+
Sbjct: 236 VRKLPPLYPLLVKGRNLYKLRTFRRL 261

BLAST of Carg20938 vs. TrEMBL
Match: tr|A0A0A0LQ19|A0A0A0LQ19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292810 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.8e-39
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0

Query: 58  GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 117
           GDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR
Sbjct: 140 GDVCRGDTVLFTQKVYAKFDKVTRHGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 199

Query: 118 GVRKLPPLYPLLVKGRNLYKLRTFR 143
           GVRKL PLYPLLVKGRNLYKLRTFR
Sbjct: 200 GVRKLRPLYPLLVKGRNLYKLRTFR 224

BLAST of Carg20938 vs. TrEMBL
Match: tr|A5BS47|A5BS47_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044432 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.1e-35
Identity = 71/86 (82.56%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 58  GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSR 117
           GDVC+GD VLFTQKVYAKFDKV R G L+GKRT+AGR+VKESYGA+KQQHTFTVEVLWS+
Sbjct: 170 GDVCKGDVVLFTQKVYAKFDKVKRNGKLLGKRTIAGRIVKESYGAAKQQHTFTVEVLWSK 229

Query: 118 GVRKLPPLYPLLVKGRNLYKLRTFRR 144
           G++KLPPL+PLLVKGRNLYKL+TFR+
Sbjct: 230 GIKKLPPLFPLLVKGRNLYKLKTFRQ 255

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022971663.11.9e-41100.00zinc finger CCCH domain-containing protein 62 isoform X2 [Cucurbita maxima][more]
XP_022927980.14.2e-4198.85zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata][more]
XP_022971662.14.2e-4198.85zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima][more]
XP_023512636.12.1e-4097.70zinc finger CCCH domain-containing protein 62 [Cucurbita pepo subsp. pepo][more]
XP_016902186.17.9e-4096.55PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X3 [Cucumi... [more]
Match NameE-valueIdentityDescription
AT5G66840.11.1e-3270.11SAP domain-containing protein[more]
Match NameE-valueIdentityDescription
sp|Q338N2|C3H62_ORYSJ7.1e-2457.30Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX... [more]
Match NameE-valueIdentityDescription
tr|A0A1S4E1T3|A0A1S4E1T3_CUCME5.3e-4096.55zinc finger CCCH domain-containing protein 62-like isoform X3 OS=Cucumis melo OX... [more]
tr|A0A1S4E1S9|A0A1S4E1S9_CUCME5.3e-4096.55zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX... [more]
tr|A0A1S4E2I3|A0A1S4E2I3_CUCME3.4e-3996.51zinc finger CCCH domain-containing protein 62-like isoform X2 OS=Cucumis melo OX... [more]
tr|A0A0A0LQ19|A0A0A0LQ19_CUCSA5.8e-3997.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292810 PE=4 SV=1[more]
tr|A5BS47|A5BS47_VITVI5.1e-3582.56Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044432 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20938-RACarg20938-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availablePANTHERPTHR35323FAMILY NOT NAMEDcoord: 57..142