Carg20913 (gene) Silver-seed gourd

Overview
NameCarg20913
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionmicrotubule-associated protein RP/EB family member 1-like
LocationCucurbita_argyrosperma_scaffold_141 : 314876 .. 316858 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTCCAATTTTTTAAAAATTTTCAATCTTTGTAATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACTTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGGTTAGTTCCATCACCATTAAAATACCTTATTTAATCAATTATAATTTATATTTAATTTATTTTTATATACATTCTTGTCACTTTTCTTGATCTTTACAATCTTTGTGGTCCAGCGTTCTCGCTAACACTCGTTCACTTTTTTAATCGATGTGGGACCCTCCCAATTCATCTCCTTCGAGGCTCGTTGCTGGGCACATCGCCTCGTGTTTACCCCATTCCCGATGTGAGACTCCTCCCAATCCACCTCTTTCAAGGCCCAACGTCTTTGCTGGCACACTGTCTTGTGTCCAACCCCTTTGGAGTTTAGCATTCTAGTTGGCACATCACTAAAAGTGTTTTGTTCTTCTACCCAACCGATGTCGAATCTCACAATCCACTCTCTTTCAAGACCCAGCATTCTCGCTGGCACTTGTTTCCTTCTCTAATCGATGTGGGACCCTCCTAATCCACCCTTCAGGGCCCAGTATCTTTGTTGGCACTCGTTCCCTTCTCTAATCGATGTGGGACCCTCCCAATCCACTCTCTTCAATGCCCAACATCCTCGCTGGCACTTGTTACCTTCTCTAATCGATGTGGGACCCTCTCAATCCACCCCCTTCGGGACCCAGTGTCTTTGTTGGCACACTACCTCGTGTTGACCCCCTTTCAGGGTTCAGCCTTCTCGCTGGCACATAGCTCAGTATCTATCTCTGATACCAACTATAACAGTCCAAACCCACCGCAAGCATATATTGTCTTATTGAGAGGTTTCCACACTCTTATAAAGAATGTTTGTTCTCCTTCCTAACAGTTCTCGGATCTCAAAAAAAAAAAAAAAAAAAAAAAAACTAGGATTTTTTTTTTTCCGTCTTAGTGTTATGATCTTATATTGTTAAACAGGTCCAACAGAAATCCGTCCTTTACCAGAAGACGACTAGCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGAATGGACCGACCTCATCATTACCACTCTCTTATTTGGTGTCATATGCTAAAATAATTATGAAATAAAGCAACGATATTATAATAATTAAAGCATTTTATATTCATATTCACCATTCATATGGGATGTATTTTCAAATGGTTTTAACCATTTGGAAA

mRNA sequence

TTCTCCAATTTTTTAAAAATTTTCAATCTTTGTAATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACTTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGGGTTCAGCCTTCTCGCTGGCACATAGCTCAGTATCTATCTCTGATACCAACTATAACAGTCCAAACCCACCGCAAGCATATATTGTCTTATTGAGAGGTTTCCACACTCTTATAAAGAATGTCCAACAGAAATCCGTCCTTTACCAGAAGACGACTAGCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGAATGGACCGACCTCATCATTACCACTCTCTTATTTGGTGTCATATGCTAAAATAATTATGAAATAAAGCAACGATATTATAATAATTAAAGCATTTTATATTCATATTCACCATTCATATGGGATGTATTTTCAAATGGTTTTAACCATTTGGAAA

Coding sequence (CDS)

ATGGCAAATCTTCCTCGTTTTGGTCGAACATGGAACCGTTTCTCTTCGCTGCCCCGCCCTGGCACGGCCCCACGGCTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTATCCATCGGCTCCGCGCACTGCCAATGTTCTTCAAACTTCTCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCCAGCACTTCGCCCCGCAAGCCACTATCTCCTCCTCCGACGTATAACCGTTACGACGGAGAACGGCGGAGCAGTGCTTTAGCTTCTCCCAAAACGTTCAAAACTACTTATACCTCTCCGCCACGATCACCGGCGAAGCATAAATATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGGGTTCAGCCTTCTCGCTGGCACATAGCTCAGTATCTATCTCTGATACCAACTATAACAGTCCAAACCCACCGCAAGCATATATTGTCTTATTGAGAGGTTTCCACACTCTTATAAAGAATGTCCAACAGAAATCCGTCCTTTACCAGAAGACGACTAGCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAACAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGAGAGAACGTAGGCGCCGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTCAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCGAGGCACTGA

Protein sequence

MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSPRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEGSAFSLAHSSVSISDTNYNSPNPPQAYIVLLRGFHTLIKNVQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH
Homology
[Close]
BLAST of Carg20913 vs. NCBI nr
Match: XP_022945677.1 (DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata])

HSP 1 Score: 405.6 bits (1041), Expect = 1.7e-109
Identity = 303/344 (88.08%), Postives = 304/344 (88.37%), Query Frame = 0 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MANLPRFGRTWNRFSSLPRPGTAPRLDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSALASPKTFKTTYT 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSALASPKTFKTTYT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSALASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEGSAFSLAHSSVSISD 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEP+VRPRSPPE               
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPE--------------- 180

Query: 181 TNYNSPNPPQAYIVLLRGFHTLIKNVQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ 240
                                    VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ
Sbjct: 181 -------------------------VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ 240

Query: 241 THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF 300
           THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF
Sbjct: 241 THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF 300

Query: 301 MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH 345
           MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]
BLAST of Carg20913 vs. NCBI nr
Match: XP_023538835.1 (proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 402.9 bits (1034), Expect = 1.1e-108
Identity = 300/344 (87.21%), Postives = 302/344 (87.79%), Query Frame = 0 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MANLPRFGRTWNRFSSLPRPGTAPRLD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSALASPKTFKTTYT 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RYDGERR+SALASPKTFKTTYT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRYDGERRTSALASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEGSAFSLAHSSVSISD 180
           SPPRSPAKHKYSTST+QAPLSPLALPSLEKRHEPEPMVRPRSPPE               
Sbjct: 121 SPPRSPAKHKYSTSTLQAPLSPLALPSLEKRHEPEPMVRPRSPPE--------------- 180

Query: 181 TNYNSPNPPQAYIVLLRGFHTLIKNVQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ 240
                                    VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ
Sbjct: 181 -------------------------VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ 240

Query: 241 THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF 300
           THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF
Sbjct: 241 THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF 300

Query: 301 MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH 345
           MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]
BLAST of Carg20913 vs. NCBI nr
Match: XP_022974813.1 (DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 401.0 bits (1029), Expect = 4.1e-108
Identity = 268/344 (77.91%), Postives = 268/344 (77.91%), Query Frame = 0 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MANLPRFGRTWNRFSSLPRP TAPR DV                                
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSALASPKTFKTTYT 120
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSA ASPKTFKTTYT
Sbjct: 61  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEGSAFSLAHSSVSISD 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE               
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE--------------- 180

Query: 181 TNYNSPNPPQAYIVLLRGFHTLIKNVQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ 240
                                    VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ
Sbjct: 181 -------------------------VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ 240

Query: 241 THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF 300
           THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF
Sbjct: 241 THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF 300

Query: 301 MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH 345
           MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]
BLAST of Carg20913 vs. NCBI nr
Match: XP_022974814.1 (DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_022974815.1 DNA-directed RNA polymerase II subunit 1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 401.0 bits (1029), Expect = 4.1e-108
Identity = 268/344 (77.91%), Postives = 268/344 (77.91%), Query Frame = 0 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MANLPRFGRTWNRFSSLPRP TAPR DV                                
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSALASPKTFKTTYT 120
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSA ASPKTFKTTYT
Sbjct: 61  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEGSAFSLAHSSVSISD 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE               
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE--------------- 180

Query: 181 TNYNSPNPPQAYIVLLRGFHTLIKNVQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ 240
                                    VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ
Sbjct: 181 -------------------------VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQ 240

Query: 241 THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF 300
           THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF
Sbjct: 241 THQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSF 300

Query: 301 MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH 345
           MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 MNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]
BLAST of Carg20913 vs. NCBI nr
Match: XP_023521993.1 (uncharacterized protein LOC111785865 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 2.7e-67
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 

Query: 206 VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS 265
           VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS
Sbjct: 66  VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS 125

Query: 266 SDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGL 325
           SDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGL
Sbjct: 126 SDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGL 185

Query: 326 HLAFTKKPTHADSVHDSRH 345
           HLAFTKKPTHADSVHDSRH
Sbjct: 186 HLAFTKKPTHADSVHDSRH 204


HSP 2 Score: 64.3 bits (155), Expect = 9.2e-07
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MANLPRFGRTWNRFSSLPRPGTAPRLDV 29
          MANLPRFGRTWNRFSSLPRPGTAPRLDV
Sbjct: 1  MANLPRFGRTWNRFSSLPRPGTAPRLDV 28

[Close]
BLAST of Carg20913 vs. TAIR10
Match: AT2G46630.1 (unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-09
Identity = 48/140 (34.29%), Postives = 66/140 (47.14%), Query Frame = 0 

Query: 239 KQTHQQQSD----------VINIKGENVGAVMHITQSSDATE-----THKKKPTVSYSSE 298
           K+ H+Q S           VI I GEN GAVM I +S    +     TH  + +     +
Sbjct: 245 KKMHRQPSSSDSENIMSTRVITIAGENKGAVMEILRSPQGNKTGGSGTHSSRVSHGTGEK 304

Query: 299 NEK---------------------DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRD 343
             +                       NK +SN+P K+FMNSN Q +NNSI+YNS+ SH D
Sbjct: 305 GRRLQXXXXXXXXXXXXXXXXTKNVPNKGNSNLPMKAFMNSNVQMINNSIVYNSTASHHD 364

[Close]
BLAST of Carg20913 vs. TAIR10
Match: AT1G75260.1 (oxidoreductases, acting on NADH or NADPH)

HSP 1 Score: 43.1 bits (100), Expect = 4.0e-04
Identity = 32/94 (34.04%), Postives = 48/94 (51.06%), Query Frame = 0 

Query: 248 VINIKGENVGAVMHITQSSDAT--ETH----------KKKPTVSYSSENEKDSNKSSSNM 307
           V  + GEN GA M I    D    E H          +   T +  +EN KD +++    
Sbjct: 345 VYTLTGENKGATMGIGSEKDKKDGEVHIRRGYRSNPDESSNTTATETENPKD-DEAEEEA 404

Query: 308 PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF 330
              +++N N QG+NNSI+  SS+S  DPG+H++F
Sbjct: 405 SFTAYINGNTQGINNSIVVESSVSENDPGVHMSF 437

[Close]
BLAST of Carg20913 vs. TrEMBL
Match: tr|A0A0A0L5T3|A0A0A0L5T3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.6e-55
Identity = 162/349 (46.42%), Postives = 182/349 (52.15%), Query Frame = 0 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+NLPRFGR WNRFSSLPRPGTA R +                                 
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPE-PQPFTAATEPEVFPSAVPTTNTFQTSPIKQRT 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSALASPKTFKTTYT 120
                                       X  XXXX   RY+GERR+SA  SPKTFK T+ 
Sbjct: 61  PRLSSPVKKFSSPPSSPKYSGAGTVSPRXPLXXXXVHNRYEGERRTSATTSPKTFKPTHI 120

Query: 121 SPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEGSAFSLAHSSVSIS 180
           SPP SP+K ++ST  T  APLSPLALP  + R EPE  +RPRSPPE              
Sbjct: 121 SPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPE-------------- 180

Query: 181 DTNYNSPNPPQAYIVLLRGFHTLIKNVQQKSVLYQKTTSEKPAKTDH--RASEYSSGKPQ 240
                                     ++QK +LYQ TT+EKP KTDH  +  EY + KPQ
Sbjct: 181 --------------------------IEQKKILYQTTTTEKPTKTDHYRQNDEYGASKPQ 240

Query: 241 QKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMP 300
           QKQ HQQ QSDVINIKGENVGAVMHITQSSD +E  KKKPTV  S ENE+          
Sbjct: 241 QKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKKPTVGQSKENEEXXXXXXXXXX 300

Query: 301 GKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF-TKKPTHADSVHDSRH 345
                      VNNSILYNSSLSHRDPGLHLAF +KK  H DS+HDSRH
Sbjct: 301 XXXXXXXXXXXVNNSILYNSSLSHRDPGLHLAFGSKKSKHGDSIHDSRH 308

[Close]
BLAST of Carg20913 vs. TrEMBL
Match: tr|A0A1S3AVJ6|A0A1S3AVJ6_CUCME (microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=3656 GN=LOC103483157 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 4.7e-52
Identity = 151/349 (43.27%), Postives = 172/349 (49.28%), Query Frame = 0 

Query: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDV-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+NLPRFGRTWNRFSSLPRP TA R +                                 
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYDGERRSSALASPKTFKTTY 120
                                                  R+DGERR+SA  SPKTFK TY
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 TSPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEGSAFSLAHSSVSI 180
            SPP S     +ST +TV APLSPLALP  E R EPE  +RPRSPPE             
Sbjct: 121 ISPPPSXXXXXHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPE------------- 180

Query: 181 SDTNYNSPNPPQAYIVLLRGFHTLIKNVQQKSVLYQKTTSEKPAKTDHR-ASEYSSGKPQ 240
                                      ++QK +LYQ TT+EKP KTD+R   +Y + KPQ
Sbjct: 181 ---------------------------IEQKKILYQTTTTEKPTKTDYRQTDQYGTSKPQ 240

Query: 241 QKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMP 300
           QKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E  KKKP+V  S ENE           
Sbjct: 241 QKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKPSVGQSKENEXXXXXXXXXXX 300

Query: 301 GKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF-TKKPTHADSVHDSRH 345
                        NSILYNSSLSHRDPGLHLA+ +K P H DS+H+SRH
Sbjct: 301 XXXXXXXXXXXXXNSILYNSSLSHRDPGLHLAYSSKNPKHGDSIHESRH 309

[Close]
BLAST of Carg20913 vs. TrEMBL
Match: tr|A0A0A0L3R5|A0A0A0L3R5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119280 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 83/248 (33.47%), Postives = 120/248 (48.39%), Query Frame = 0 

Query: 99  RYDGERRSSALASPKTFKTTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMV 158
           +YDG R       P + + T   P  SP +          P SP    S++K   P    
Sbjct: 32  QYDGRR------YPSSARDTSLEPRSSPPRVALRRDDQPLPASPTY--SIKKATSPPSSP 91

Query: 159 RPRSPPEGSAFSLAHSSVSISDTNYNSPN-PPQAYIVLLRGFHTLIKNVQQKSVLYQKTT 218
             R+P   +A  ++  + ++ +     PN  P++               +QK  ++ K+T
Sbjct: 92  SYRAP---AARGISSPTKTVDEYPKYKPNTQPRS------------PEAKQKPGIFHKST 151

Query: 219 SEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETH---KK 278
            EK  K+D     + S K       Q Q + INIKGENVGAVM I +SS     H   K 
Sbjct: 152 VEKVTKSDR---YHESSKTLSSHKGQLQPNAINIKGENVGAVMEIVESSKREGGHMIKKI 211

Query: 279 KPTV--------SYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLH 335
           K T           + +N + S   +S+MP  +F+NSNFQ VNNS+LYN++L+HRDPGLH
Sbjct: 212 KETARGILNNNDMANDQNNEASKAPNSSMPTNTFLNSNFQSVNNSLLYNANLTHRDPGLH 253

[Close]
BLAST of Carg20913 vs. TrEMBL
Match: tr|A0A1S3AV38|A0A1S3AV38_CUCME (zyxin-like OS=Cucumis melo OX=3656 GN=LOC103483158 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.3e-14
Identity = 63/134 (47.01%), Postives = 82/134 (61.19%), Query Frame = 0 

Query: 206 VQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQS 265
           V+ K ++Y KT  EKP+K++  + EY S K  QK   +Q+ +VI +KG NVGAVM I +S
Sbjct: 152 VETKGIVYNKTV-EKPSKSNRSSGEYGSSKSHQK---KQKPEVIKLKGHNVGAVMEINKS 211

Query: 266 SD----ATETHKKKPTV------SYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYN 325
           S       ET KK  T        Y  E++K   K     P  +FMNSNFQ VNNS+L++
Sbjct: 212 STGYRLGGETLKKNETEDVGDVHGYGHEDKKTETK-KKEPPITAFMNSNFQSVNNSLLFD 271

Query: 326 SSLSHRDPGLHLAF 330
           SS +HRDPGLHLAF
Sbjct: 272 SSCNHRDPGLHLAF 280

[Close]
BLAST of Carg20913 vs. TrEMBL
Match: tr|A0A0A0L320|A0A0A0L320_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119300 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 83/228 (36.40%), Postives = 109/228 (47.81%), Query Frame = 0 

Query: 120 TSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEGSAFSLAHSSVSIS 179
           T+PP +PAK   S     +PLSPLALP  +         +PR  PE              
Sbjct: 101 TTPPLTPAK---SRPAKTSPLSPLALPRSQVITGNGTTAQPRVQPE-------------- 160

Query: 180 DTNYNSPNPPQAYIVLLRGFHTLIKNVQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQK 239
                                     V+ K ++Y K   EKP+K+ +R SE+ SGK   +
Sbjct: 161 --------------------------VETKGIVYNKAADEKPSKS-NRQSEHGSGKSVHQ 220

Query: 240 QTHQQQSDVINIKGENVGAVMHITQSSD----ATETHKKKPTV------SYSSENEKDSN 299
           +  QQ+  V+ +KG NVGAVM + +SS       ET KKK T        Y  E++K   
Sbjct: 221 K--QQKPGVMKLKGHNVGAVMEVNKSSAGYRLGGETLKKKETEDDGDVDGYGHEDKKTGR 277

Query: 300 KSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHAD 338
           K     P  +FMNSNFQ VNNS+L++SS  HRDPGLHL+F   P  AD
Sbjct: 281 KKKP--PISAFMNSNFQSVNNSLLFDSSCQHRDPGLHLSF---PNAAD 277

The following BLAST results are available for this feature:
BLAST of Carg20913 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022945677.11.7e-10988.08DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata][more]
XP_023538835.11.1e-10887.21proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo][more]
XP_022974813.14.1e-10877.91DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima][more]
XP_022974814.14.1e-10877.91DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_... [more]
XP_023521993.12.7e-67100.00uncharacterized protein LOC111785865 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg20913 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46630.11.8e-0934.29unknown protein[more]
AT1G75260.14.0e-0434.04oxidoreductases, acting on NADH or NADPH[more]
BLAST of Carg20913 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg20913 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5T3|A0A0A0L5T3_CUCSA1.6e-5546.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1[more]
tr|A0A1S3AVJ6|A0A1S3AVJ6_CUCME4.7e-5243.27microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=365... [more]
tr|A0A0A0L3R5|A0A0A0L3R5_CUCSA1.8e-1433.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119280 PE=4 SV=1[more]
tr|A0A1S3AV38|A0A1S3AV38_CUCME2.3e-1447.01zyxin-like OS=Cucumis melo OX=3656 GN=LOC103483158 PE=4 SV=1[more]
tr|A0A0A0L320|A0A0A0L320_CUCSA1.1e-1336.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119300 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20913-RACarg20913-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 263..303
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..281
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 282..303
NoneNo IPR availablePANTHERPTHR33472FAMILY NOT NAMEDcoord: 3..343