Carg20805 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20805
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	8-amino-7-oxononanoate synthase
Location	Cucurbita_argyrosperma_scaffold_153 : 78861 .. 80715 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTTGGTGCTTTTCCCTTATTTGCTTGGCTTGTCCGGGTATGTATTTTGTAACCGCCCAATCCTACCACTAGTAGATATTGTCTTATTTGGGCTTTCCCTTCTAGGCTTCCCCTCAAGGTTTTAAACGCATCTGTTACGGAGAGGTTTCCACATCCTTATAAGAAATACTTTATGTAACAACCTGCTTTTTAGTTGGTATCAGAGCCAGACACCGAGCGATGTACCAGTGAGGAGGCTAAACCCAGAAGGGGGTGGACACGAGGCGGTGTGCCAACAAGGACCTTGGGCCCTAAAGGGGGGTGGATTGGGGGGGTCTCACATCGATTGAAGAAGGGAACGAGTGCCAGCGAGGGTGGATTGTGAGATCCCACATCGATTAGGGATAAGAACGAAACATTCTTTATAAGGGTGTGGTAACCTCTCCATAATAGACGTGTTTTAATAACCTTGAGGGGAAGCCTGAAATGAAAAGCCCAAAGAAAACAATATCTGCTAATCGTGGGCTTGGGCAGTTATATACTTGGTAGTTAGTTTAGAATAGCTACTTGTTTCCATGTCATGGCCTATTTGGTTTGGTTAAGTGTTTGATTCTACATGTGAATTCATCTTTATTGAGGCTCTAGTGTAGAGATTATTATGATGTATGTGTTTGGTGCCATTATCATAACTTAATTTTATTTTTTTCTCTATCTCATGTATTCTTGAAATTTATTTCTTTATTAGAGATTAAGAAAGAGTTGCATCTTTATGTGGAACTTGAGTTCTTGGGGTGGACAGTCTAGTTTTGATGTGTTGATTGTATGGAGTAGTTTCTAAATTGAAGTCTTAGTTAAGTCGTTATATTCATAAGTTTGAGGTTAGTGTATTGGGGTTGGTGAGGGGATAGTTTCATTTAGACATATGAGATTCATCATGAGGGGTGATTCTCATTTAGGTGGGTCTTTGTGTATGTGGTTGGTATATTTGATTGAGTCGGAGCCACCCATGTTTTAGTTTGTTTGTGGGGTTCGAGTAGCTTTGTATGGGTTTGCATTCTTGTAATGACCCAAGCCCACCGCTTACAGATATTGTACTCTTTGGGTTTTCCCTCGAGGCTTTTAAAATGCGTTTGCTAGGGTGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCACCTTCTCAACCGATGTGGGATCTCACAATTCATGTACTTAAGTTAAGCATTCTTAACAATTGAATGAGTCGTGAGTTTCTGCGAGATGTTCACTTTGTTCTTAGTTCTTCGTTGGGATAACCTTTGCCAATGAGCCACCCGACGAGTTATTTTCATTGGGATAACCTTTGCCGACTCCCAACACTAACCCGAAATACTGGACTCGATATATTGACGTGGTATTAAGTTTGATAACTTATCTAAAGTAAATAATGAAAACAAATAAGTGAAAAGCATGAATAACCTTTTATTTATTGAAGTTTCTTACCGCACTTCGTTTTGGCTGGTTGTCAGATTTGAGCAGCTGGGGATGAGCATGTGGGATGGTTATGTCGAGCAGGCTTTCTTAGCTAGGGTTGCTCCAATTGCTCAGGTCGTTGAAACCCATTACTCCAACACTTGAGAAACTAAATCCCGTTGACGACGAAGCTACCATTGAAGCGAAAGAAGATGGTGAATTCAAGGTGTTCGATGAAATGCAGCCATGGGATAGGAACTCTGTGGAGGTTGAAATGGCAGAAACCACTGTCCAGAAGCGGCTTCTTGATATTCCCAGTTCCGGTATGCTTCCTTGCTTTTATTATGTGGGAATGAATGCATTAGAACTTGAATGCCATTTTGCATATTTGATATTGTTGACATTGTCAGCGCAGTGA

mRNA sequence

ATGGTGCTTGGTGCTTTTCCCTTATTTGCTTGGCTTGTCCGGTTGGTATCAGAGCCAGACACCGAGCGATGTACCAGTGAGGAGGCTAAACCCAGAAGGGGGTGGACACGAGGCGGTGTGCCAACAAGGACCTTGGGCCCTAAAGGGGGGTGGATTGGGGGGGTCTCACATCGATTGAAGAAGGGAACGAGTGCCAGCGAGGGTGGATTGTCGTTGAAACCCATTACTCCAACACTTGAGAAACTAAATCCCGTTGACGACGAAGCTACCATTGAAGCGAAAGAAGATGGTGAATTCAAGGTGTTCGATGAAATGCAGCCATGGGATAGGAACTCTGTGGAGGTTGAAATGGCAGAAACCACTGTCCAGAAGCGGCTTCTTGATATTCCCAGTTCCGGTATGCTTCCTTGCTTTTATTATGTGGGAATGAATGCATTAGAACTTGAATGCCATTTTGCATATTTGATATTGTTGACATTGTCAGCGCAGTGA

Coding sequence (CDS)

ATGGTGCTTGGTGCTTTTCCCTTATTTGCTTGGCTTGTCCGGTTGGTATCAGAGCCAGACACCGAGCGATGTACCAGTGAGGAGGCTAAACCCAGAAGGGGGTGGACACGAGGCGGTGTGCCAACAAGGACCTTGGGCCCTAAAGGGGGGTGGATTGGGGGGGTCTCACATCGATTGAAGAAGGGAACGAGTGCCAGCGAGGGTGGATTGTCGTTGAAACCCATTACTCCAACACTTGAGAAACTAAATCCCGTTGACGACGAAGCTACCATTGAAGCGAAAGAAGATGGTGAATTCAAGGTGTTCGATGAAATGCAGCCATGGGATAGGAACTCTGTGGAGGTTGAAATGGCAGAAACCACTGTCCAGAAGCGGCTTCTTGATATTCCCAGTTCCGGTATGCTTCCTTGCTTTTATTATGTGGGAATGAATGCATTAGAACTTGAATGCCATTTTGCATATTTGATATTGTTGACATTGTCAGCGCAGTGA

Protein sequence

MVLGAFPLFAWLVRLVSEPDTERCTSEEAKPRRGWTRGGVPTRTLGPKGGWIGGVSHRLKKGTSASEGGLSLKPITPTLEKLNPVDDEATIEAKEDGEFKVFDEMQPWDRNSVEVEMAETTVQKRLLDIPSSGMLPCFYYVGMNALELECHFAYLILLTLSAQ

Homology

[Close]

BLAST of Carg20805 vs. NCBI nr
Match: XP_022928954.1 (8-amino-7-oxononanoate synthase isoform X2 [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 71  SLKPITPTLEKLNPVDDEATIEAKEDGEFKVFDEMQPWDRNSVEVEMAETTVQKRLLDIP 130
           SL+PITP+LEKLNPVDDEA IEAKEDGEFKVFDEMQPWDR SVEVE+AE+TVQK LLDIP
Sbjct: 23  SLRPITPSLEKLNPVDDEAPIEAKEDGEFKVFDEMQPWDRASVEVEIAESTVQKWLLDIP 82

Query: 131 SSG 134
           SSG
Sbjct: 83  SSG 85

[Close]

BLAST of Carg20805 vs. NCBI nr
Match: XP_022928953.1 (8-amino-7-oxononanoate synthase isoform X1 [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 71  SLKPITPTLEKLNPVDDEATIEAKEDGEFKVFDEMQPWDRNSVEVEMAETTVQKRLLDIP 130
           SL+PITP+LEKLNPVDDEA IEAKEDGEFKVFDEMQPWDR SVEVE+AE+TVQK LLDIP
Sbjct: 23  SLRPITPSLEKLNPVDDEAPIEAKEDGEFKVFDEMQPWDRASVEVEIAESTVQKWLLDIP 82

Query: 131 SSG 134
           SSG
Sbjct: 83  SSG 85

[Close]

BLAST of Carg20805 vs. NCBI nr
Match: XP_022969781.1 (8-amino-7-oxononanoate synthase isoform X2 [Cucurbita maxima])

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 71  SLKPITPTLEKLNPVDDEATIEAKEDGEFKVFDEMQPWDRNSVEVEMAETTVQKRLLDIP 130
           SL+PITP+LEKLNPVDDEA IEAKEDGEFKVFDEMQPWDR SVEVE+AE+TVQK LLDIP
Sbjct: 47  SLRPITPSLEKLNPVDDEAPIEAKEDGEFKVFDEMQPWDRASVEVEIAESTVQKWLLDIP 106

Query: 131 SSG 134
           SSG
Sbjct: 107 SSG 109

[Close]

BLAST of Carg20805 vs. NCBI nr
Match: XP_022969783.1 (8-amino-7-oxononanoate synthase isoform X4 [Cucurbita maxima])

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 71  SLKPITPTLEKLNPVDDEATIEAKEDGEFKVFDEMQPWDRNSVEVEMAETTVQKRLLDIP 130
           SL+PITP+LEKLNPVDDEA IEAKEDGEFKVFDEMQPWDR SVEVE+AE+TVQK LLDIP
Sbjct: 35  SLRPITPSLEKLNPVDDEAPIEAKEDGEFKVFDEMQPWDRASVEVEIAESTVQKWLLDIP 94

Query: 131 SSG 134
           SSG
Sbjct: 95  SSG 97

[Close]

BLAST of Carg20805 vs. NCBI nr
Match: XP_022969782.1 (8-amino-7-oxononanoate synthase isoform X3 [Cucurbita maxima])

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 71  SLKPITPTLEKLNPVDDEATIEAKEDGEFKVFDEMQPWDRNSVEVEMAETTVQKRLLDIP 130
           SL+PITP+LEKLNPVDDEA IEAKEDGEFKVFDEMQPWDR SVEVE+AE+TVQK LLDIP
Sbjct: 23  SLRPITPSLEKLNPVDDEAPIEAKEDGEFKVFDEMQPWDRASVEVEIAESTVQKWLLDIP 82

Query: 131 SSG 134
           SSG
Sbjct: 83  SSG 85

[Close]

BLAST of Carg20805 vs. TrEMBL
Match: tr|A0A1S3ATV3|A0A1S3ATV3_CUCME (8-amino-7-oxononanoate synthase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482901 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.0e-17
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 71  SLKPITPTLEKLNPVDDEATIEAKEDGEFKVFDEMQPWDRNSVEVEMAETTVQKRLLDIP 130
           SL+PITP+LEKLNP   EA+IEAK+D E KVFDEMQPWDR SVEVE+AE+TVQK LLDIP
Sbjct: 25  SLRPITPSLEKLNP---EASIEAKKDDELKVFDEMQPWDRASVEVEIAESTVQKWLLDIP 84

Query: 131 SSG 134
           SSG
Sbjct: 85  SSG 84

[Close]

BLAST of Carg20805 vs. TrEMBL
Match: tr|A0A1S3AUR8|A0A1S3AUR8_CUCME (8-amino-7-oxononanoate synthase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482901 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.0e-17
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 71  SLKPITPTLEKLNPVDDEATIEAKEDGEFKVFDEMQPWDRNSVEVEMAETTVQKRLLDIP 130
           SL+PITP+LEKLNP   EA+IEAK+D E KVFDEMQPWDR SVEVE+AE+TVQK LLDIP
Sbjct: 48  SLRPITPSLEKLNP---EASIEAKKDDELKVFDEMQPWDRASVEVEIAESTVQKWLLDIP 107

Query: 131 SSG 134
           SSG
Sbjct: 108 SSG 107

[Close]

BLAST of Carg20805 vs. TrEMBL
Match: tr|A0A0A0KQG5|A0A0A0KQG5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G141150 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 71  SLKPITPTLEKLNPVDDEATIEAKEDGEFKVFDEMQPWDRNSVEVEMAETTVQKRLLDIP 130
           SL+PITP+LEKLNP   EA+IE K+D E KVFDEMQPWDR SVEVE+AE+TVQK LLDIP
Sbjct: 23  SLRPITPSLEKLNP---EASIEGKKDDELKVFDEMQPWDRASVEVEIAESTVQKWLLDIP 82

Query: 131 SSG 134
           SSG
Sbjct: 83  SSG 82

[Close]

BLAST of Carg20805 vs. TrEMBL
Match: tr|A0A251QMH4|A0A251QMH4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G274800 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.8e-07
Identity = 43/87 (49.43%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 51  WIGGVSHRLKKGTSASEGGLSLKPI----TPTLEKLNPVDDEATIEAKEDGEFKVFDEMQ 110
           W  GV   L+K     +   SL+PI     P  E  NPV          DGEF VFDEMQ
Sbjct: 5   WDNGVEEALQK-LEHLQLLRSLRPIYLQNGPIQEAQNPV----------DGEFHVFDEMQ 64

Query: 111 PWDRNSVEVEMAETTVQKRLLDIPSSG 134
           PWDR+SVEV + E T QK L DIPSSG
Sbjct: 65  PWDRSSVEVHIPEPTFQKWLHDIPSSG 80

[Close]

BLAST of Carg20805 vs. TrEMBL
Match: tr|A0A251QQQ1|A0A251QQQ1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G274800 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.8e-07
Identity = 43/87 (49.43%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 51  WIGGVSHRLKKGTSASEGGLSLKPI----TPTLEKLNPVDDEATIEAKEDGEFKVFDEMQ 110
           W  GV   L+K     +   SL+PI     P  E  NPV          DGEF VFDEMQ
Sbjct: 5   WDNGVEEALQK-LEHLQLLRSLRPIYLQNGPIQEAQNPV----------DGEFHVFDEMQ 64

Query: 111 PWDRNSVEVEMAETTVQKRLLDIPSSG 134
           PWDR+SVEV + E T QK L DIPSSG
Sbjct: 65  PWDRSSVEVHIPEPTFQKWLHDIPSSG 80

The following BLAST results are available for this feature:

BLAST of Carg20805 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928954.1	4.8e-22	88.89	8-amino-7-oxononanoate synthase isoform X2 [Cucurbita moschata]	[more]
XP_022928953.1	4.8e-22	88.89	8-amino-7-oxononanoate synthase isoform X1 [Cucurbita moschata]	[more]
XP_022969781.1	4.8e-22	88.89	8-amino-7-oxononanoate synthase isoform X2 [Cucurbita maxima]	[more]
XP_022969783.1	4.8e-22	88.89	8-amino-7-oxononanoate synthase isoform X4 [Cucurbita maxima]	[more]
XP_022969782.1	4.8e-22	88.89	8-amino-7-oxononanoate synthase isoform X3 [Cucurbita maxima]	[more]

BLAST of Carg20805 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg20805 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20805 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3ATV3\|A0A1S3ATV3_CUCME	4.0e-17	79.37	8-amino-7-oxononanoate synthase isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034829...	[more]
tr\|A0A1S3AUR8\|A0A1S3AUR8_CUCME	4.0e-17	79.37	8-amino-7-oxononanoate synthase isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034829...	[more]
tr\|A0A0A0KQG5\|A0A0A0KQG5_CUCSA	1.2e-16	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G141150 PE=4 SV=1	[more]
tr\|A0A251QMH4\|A0A251QMH4_PRUPE	3.8e-07	49.43	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G274800 PE=4 SV=1	[more]
tr\|A0A251QQQ1\|A0A251QQQ1_PRUPE	3.8e-07	49.43	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G274800 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20805-RA	Carg20805-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..47

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20805	Cla004958	Watermelon (97103) v1	carwmB1037
Carg20805	Csa5G141150	Cucumber (Chinese Long) v2	carcuB1050
Carg20805	MELO3C005823	Melon (DHL92) v3.5.1	carmeB1001
Carg20805	ClCG01G001110	Watermelon (Charleston Gray)	carwcgB1009
Carg20805	CSPI05G03880	Wild cucumber (PI 183967)	carcpiB1072
Carg20805	Cucsa.193130	Cucumber (Gy14) v1	carcgyB1151
Carg20805	CmaCh15G013490	Cucurbita maxima (Rimu)	carcmaB1432
Carg20805	CmoCh15G014120	Cucurbita moschata (Rifu)	carcmoB1387
Carg20805	Lsi09G000970	Bottle gourd (USVL1VR-Ls)	carlsiB944
Carg20805	CsGy5G001110	Cucumber (Gy14) v2	carcgybB1019
Carg20805	MELO3C005823.2	Melon (DHL92) v3.6.1	carmedB1013
Carg20805	CsaV3_5G001240	Cucumber (Chinese Long) v3	carcucB1082
Carg20805	Cla97C01G001150	Watermelon (97103) v2	carwmbB1094
Carg20805	Bhi12G000022	Wax gourd	carwgoB1211

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20805	Silver-seed gourd	carcarB586
Carg20805	Cucurbita maxima (Rimu)	carcmaB1434
Carg20805	Cucurbita moschata (Rifu)	carcmoB1389
Carg20805	Cucurbita pepo (Zucchini)	carcpeB1437
Carg20805	Cucurbita pepo (Zucchini)	carcpeB1440