Carg20742 (gene) Silver-seed gourd

Overview
NameCarg20742
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpentatricopeptide repeat-containing protein At5g47360
LocationCucurbita_argyrosperma_scaffold_134 : 47747 .. 49174 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCTTTCGAATCTTTTACCCCCGACCATCATCATTTCGATTCAAGATCTCCACCTTATCTACCTTGCAGCTAAGTACAGTCTCTTCTGCCGATTTATTTTATGACCATCTGCAGAAAAACAATGGTAATGTGGAGAAAACCCTTGCTACTGTAAAAACCAAGTTGGATTCCAGATGTGTCAACCAAGTATTGCATAAATGTTCTTTCGAACTGTCCCAAATGGGTCTTAGATTTTTTATATGGGCTGGTCGACAACCTAATTATAGGCATAGTTCTTTTATGTACACTAGAGCTTGTGAACTGATTGGACTTAATCGAAGTCCATGTTTGCTTTTTAATGTTATTGAAGATTATAGAAGGGAGGGTTGCCTTGTTGATATTGGGATGTTTAAGGTTATTTTAAATTTGTGTAAAGAAGGTAAGCTTGCCAAAGAGGCTTTGTCGATATTAGGGAAAATGGCTGAATTTCATTTGCGTGCTGATACTACAATGTATAATCTGGTCATAAGGTTATTTACTGAGAAGGGAGATATGGATAAGGCGATGGAGTTGTTGAAAGAGATGGATTCAGTTGATATTGATCCTAATATGATCACTTATATTGCCATGCTCAAAGGATTCTGTGATGTGGGTCGTCTGGAGGATGCTTATGGATTATTTAAGGTTATGAAGGACAATGGATGTGCACCCAATACAGTGGCTTACTCCGTGCTACTTAATGGTGCCAGTCGACATGGGGATCTGGAAAAGCTAATGGAATTGTTGGAAGAGATGGAAAAACAAGGGGGAACTTGCGGTCCAAATACTGTCACGTACACTTCCATAATCCAGAGTCTATGTGAAGTAGGCCAGCCTCTGGAGGCATTGAAGATATTGGACAGAATGGAAGACTTTGGTTGTGCTCCAAATCGTGTTACAGTTAGCGTGTTAGTAAAGGAATTTTGTAAAGATGGTCACATGGAGGAGGCTTATAAGTTGATTGATAGAGTTGCTGCAAGAGGTGGTGCTTCCTATGGTGATTGCTATAGCTCACTTGTAATATCCTTGATCAAGATGAAAAGGATTGCCGAGGCAGAGGAGCTATTTAGAAACATGTTAGCCAATGGGGTGAAGCCCGATGGCGTGGCTTGTACTCTCATGATCAAGGAATTGTGCTTAGAGGAGCGAGTGGTAGATGGTTTTAACTTATGCAACGAAGTCGATAGGAATGGATATTTATCTTCCATTGATTCTGATATTTATTCTCTTCTTTTAGTTGGACTTTGTGAGCACGACCACTCTGTGGACGCTGCAAAACTTGCAAGGTTGATGCTTCAAAAAGGGATTCGTTTAAAACCTCACTATGCTGAAAGTATCATCAAACATGTGAAAAAATTTGGAGACCAAAATTTAGTTATGCATTTGGGTGGAATAAGGGAATGA

mRNA sequence

ATGGCTCTCTTTCGAATCTTTTACCCCCGACCATCATCATTTCGATTCAAGATCTCCACCTTATCTACCTTGCAGCTAAGTACAGTCTCTTCTGCCGATTTATTTTATGACCATCTGCAGAAAAACAATGGTAATGTGGAGAAAACCCTTGCTACTGTAAAAACCAAGTTGGATTCCAGATGTGTCAACCAAGTATTGCATAAATGTTCTTTCGAACTGTCCCAAATGGGTCTTAGATTTTTTATATGGGCTGGTCGACAACCTAATTATAGGCATAGTTCTTTTATGTACACTAGAGCTTGTGAACTGATTGGACTTAATCGAAGTCCATGTTTGCTTTTTAATGTTATTGAAGATTATAGAAGGGAGGGTTGCCTTGTTGATATTGGGATGTTTAAGGTTATTTTAAATTTGTGTAAAGAAGGTAAGCTTGCCAAAGAGGCTTTGTCGATATTAGGGAAAATGGCTGAATTTCATTTGCGTGCTGATACTACAATGTATAATCTGGTCATAAGGTTATTTACTGAGAAGGGAGATATGGATAAGGCGATGGAGTTGTTGAAAGAGATGGATTCAGTTGATATTGATCCTAATATGATCACTTATATTGCCATGCTCAAAGGATTCTGTGATGTGGGTCGTCTGGAGGATGCTTATGGATTATTTAAGGTTATGAAGGACAATGGATGTGCACCCAATACAGTGGCTTACTCCGTGCTACTTAATGGTGCCAGTCGACATGGGGATCTGGAAAAGCTAATGGAATTGTTGGAAGAGATGGAAAAACAAGGGGGAACTTGCGGTCCAAATACTGTCACGTACACTTCCATAATCCAGAGTCTATGTGAAGTAGGCCAGCCTCTGGAGGCATTGAAGATATTGGACAGAATGGAAGACTTTGGTTGTGCTCCAAATCGTGTTACAGTTAGCGTGTTAGTAAAGGAATTTTGTAAAGATGGTCACATGGAGGAGGCTTATAAGTTGATTGATAGAGTTGCTGCAAGAGGTGGTGCTTCCTATGGTGATTGCTATAGCTCACTTGTAATATCCTTGATCAAGATGAAAAGGATTGCCGAGGCAGAGGAGCTATTTAGAAACATGTTAGCCAATGGGGTGAAGCCCGATGGCGTGGCTTGTACTCTCATGATCAAGGAATTGTGCTTAGAGGAGCGAGTGGTAGATGGTTTTAACTTATGCAACGAAGTCGATAGGAATGGATATTTATCTTCCATTGATTCTGATATTTATTCTCTTCTTTTAGTTGGACTTTGTGAGCACGACCACTCTGTGGACGCTGCAAAACTTGCAAGGTTGATGCTTCAAAAAGGGATTCGTTTAAAACCTCACTATGCTGAAAGTATCATCAAACATGTGAAAAAATTTGGAGACCAAAATTTAGTTATGCATTTGGGTGGAATAAGGGAATGA

Coding sequence (CDS)

ATGGCTCTCTTTCGAATCTTTTACCCCCGACCATCATCATTTCGATTCAAGATCTCCACCTTATCTACCTTGCAGCTAAGTACAGTCTCTTCTGCCGATTTATTTTATGACCATCTGCAGAAAAACAATGGTAATGTGGAGAAAACCCTTGCTACTGTAAAAACCAAGTTGGATTCCAGATGTGTCAACCAAGTATTGCATAAATGTTCTTTCGAACTGTCCCAAATGGGTCTTAGATTTTTTATATGGGCTGGTCGACAACCTAATTATAGGCATAGTTCTTTTATGTACACTAGAGCTTGTGAACTGATTGGACTTAATCGAAGTCCATGTTTGCTTTTTAATGTTATTGAAGATTATAGAAGGGAGGGTTGCCTTGTTGATATTGGGATGTTTAAGGTTATTTTAAATTTGTGTAAAGAAGGTAAGCTTGCCAAAGAGGCTTTGTCGATATTAGGGAAAATGGCTGAATTTCATTTGCGTGCTGATACTACAATGTATAATCTGGTCATAAGGTTATTTACTGAGAAGGGAGATATGGATAAGGCGATGGAGTTGTTGAAAGAGATGGATTCAGTTGATATTGATCCTAATATGATCACTTATATTGCCATGCTCAAAGGATTCTGTGATGTGGGTCGTCTGGAGGATGCTTATGGATTATTTAAGGTTATGAAGGACAATGGATGTGCACCCAATACAGTGGCTTACTCCGTGCTACTTAATGGTGCCAGTCGACATGGGGATCTGGAAAAGCTAATGGAATTGTTGGAAGAGATGGAAAAACAAGGGGGAACTTGCGGTCCAAATACTGTCACGTACACTTCCATAATCCAGAGTCTATGTGAAGTAGGCCAGCCTCTGGAGGCATTGAAGATATTGGACAGAATGGAAGACTTTGGTTGTGCTCCAAATCGTGTTACAGTTAGCGTGTTAGTAAAGGAATTTTGTAAAGATGGTCACATGGAGGAGGCTTATAAGTTGATTGATAGAGTTGCTGCAAGAGGTGGTGCTTCCTATGGTGATTGCTATAGCTCACTTGTAATATCCTTGATCAAGATGAAAAGGATTGCCGAGGCAGAGGAGCTATTTAGAAACATGTTAGCCAATGGGGTGAAGCCCGATGGCGTGGCTTGTACTCTCATGATCAAGGAATTGTGCTTAGAGGAGCGAGTGGTAGATGGTTTTAACTTATGCAACGAAGTCGATAGGAATGGATATTTATCTTCCATTGATTCTGATATTTATTCTCTTCTTTTAGTTGGACTTTGTGAGCACGACCACTCTGTGGACGCTGCAAAACTTGCAAGGTTGATGCTTCAAAAAGGGATTCGTTTAAAACCTCACTATGCTGAAAGTATCATCAAACATGTGAAAAAATTTGGAGACCAAAATTTAGTTATGCATTTGGGTGGAATAAGGGAATGA

Protein sequence

MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSRCVNQVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDYRREGCLVDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRADTTMYNLVIRLFTEKGDMDKAMELLKEMDSVDIDPNMITYIAMLKGFCDVGRLEDAYGLFKVMKDNGCAPNTVAYSVLLNGASRHGDLEKLMELLEEMEKQGGTCGPNTVTYTSIIQSLCEVGQPLEALKILDRMEDFGCAPNRVTVSVLVKEFCKDGHMEEAYKLIDRVAARGGASYGDCYSSLVISLIKMKRIAEAEELFRNMLANGVKPDGVACTLMIKELCLEERVVDGFNLCNEVDRNGYLSSIDSDIYSLLLVGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE
Homology
[Close]
BLAST of Carg20742 vs. NCBI nr
Match: XP_022928928.1 (pentatricopeptide repeat-containing protein At5g47360 [Cucurbita moschata])

HSP 1 Score: 388.7 bits (997), Expect = 2.9e-104
Identity = 472/475 (99.37%), Postives = 472/475 (99.37%), Query Frame = 0 

Query: 1   MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSR 60
           MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQK NGNVEKTLATVKTKLDSR
Sbjct: 1   MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKKNGNVEKTLATVKTKLDSR 60

Query: 61  CVNQVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDY 120
           CVNQVLHKCS ELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDY
Sbjct: 61  CVNQVLHKCSLELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDY 120

Query: 121 RREGCLVDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRAXXXXXXXXXXXXXXXXXX 180
           RREGCLVDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLR XXXXXXXXXXXXXXXXXX
Sbjct: 121 RREGCLVDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF 300
           XXXXXXXXXXXXXXXXXXXXXXXXGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRNGYLSSIDSDIYSLLL 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRNGYLSSIDSDIYSLLL
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRNGYLSSIDSDIYSLLL 420

Query: 421 VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE 476
           VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE
Sbjct: 421 VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE 475

[Close]
BLAST of Carg20742 vs. NCBI nr
Match: XP_023551479.1 (pentatricopeptide repeat-containing protein At5g47360 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.9 bits (995), Expect = 5.0e-104
Identity = 470/475 (98.95%), Postives = 473/475 (99.58%), Query Frame = 0 

Query: 1   MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSR 60
           MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTL TVKTKLDSR
Sbjct: 1   MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLTTVKTKLDSR 60

Query: 61  CVNQVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDY 120
           CVN+VLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCL+FNVIEDY
Sbjct: 61  CVNEVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLVFNVIEDY 120

Query: 121 RREGCLVDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRAXXXXXXXXXXXXXXXXXX 180
           RREGCLVDIGMFKVILNLCKEGKLAKEALSILG+MAEFHLR XXXXXXXXXXXXXXXXXX
Sbjct: 121 RREGCLVDIGMFKVILNLCKEGKLAKEALSILGEMAEFHLRXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF 300
           XXXXXXXXXXXXXXXXXXXXXXXXGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRNGYLSSIDSDIYSLLL 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRNGYLSSIDSDIYSLLL
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRNGYLSSIDSDIYSLLL 420

Query: 421 VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE 476
           VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE
Sbjct: 421 VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE 475

[Close]
BLAST of Carg20742 vs. NCBI nr
Match: XP_022969835.1 (pentatricopeptide repeat-containing protein At5g47360 [Cucurbita maxima])

HSP 1 Score: 366.7 bits (940), Expect = 1.2e-97
Identity = 462/475 (97.26%), Postives = 465/475 (97.89%), Query Frame = 0 

Query: 1   MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSR 60
           MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATV+TKLDSR
Sbjct: 1   MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVRTKLDSR 60

Query: 61  CVNQVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDY 120
           CVNQVLHKCSFELS MGLRFFIWAGRQPNYRHSSFMY RACELIGLNRSPCLLFNVIEDY
Sbjct: 61  CVNQVLHKCSFELSPMGLRFFIWAGRQPNYRHSSFMYARACELIGLNRSPCLLFNVIEDY 120

Query: 121 RREGCLVDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRAXXXXXXXXXXXXXXXXXX 180
           RREGCL+DIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRAXXXXXXXXXXXXXXXXXX
Sbjct: 121 RREGCLLDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRAXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF 300
           XXXXXXXXXXXXXXXXXXXXXXXXG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRNGYLSSIDSDIYSLLL 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GYLSSIDSDIYSLLL
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYLSSIDSDIYSLLL 420

Query: 421 VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE 476
           VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFG Q+LVMHLGGIRE
Sbjct: 421 VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGGQDLVMHLGGIRE 475

[Close]
BLAST of Carg20742 vs. NCBI nr
Match: XP_004139002.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Cucumis sativus] >XP_011649081.1 PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Cucumis sativus] >KGN61448.1 hypothetical protein Csa_2G123590 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 8.0e-86
Identity = 394/475 (82.95%), Postives = 415/475 (87.37%), Query Frame = 0 

Query: 1   MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSR 60
           MALFRI  PR SSF   ISTLST  L+T+SS+DLFYDHL+K+NGN++KTLAT+KTKLDSR
Sbjct: 1   MALFRISCPRSSSFLLNISTLSTFHLNTLSSSDLFYDHLEKSNGNLDKTLATLKTKLDSR 60

Query: 61  CVNQVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDY 120
           CVN+VL+KCSFELSQMGLRFFIWAGRQPNYRHSSFMY+RACELIG+N SPCLLFNVIEDY
Sbjct: 61  CVNEVLYKCSFELSQMGLRFFIWAGRQPNYRHSSFMYSRACELIGINVSPCLLFNVIEDY 120

Query: 121 RREGCLVDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRAXXXXXXXXXXXXXXXXXX 180
           RREGCLVDI MFK+ILNLCKE KLAKEALSIL KM+EFHLR XXXXXXXXXXXXXXXXXX
Sbjct: 121 RREGCLVDIRMFKIILNLCKEAKLAKEALSILRKMSEFHLRXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF 300
           XXXXXXXXXXXXXXXXXXXXXXXXGT                                ++
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXGTCSPNTVTYTSIIQSLCEEGHPLEALKVLDRMEEY 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 GYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRNGYLSSIDSDIYSLLL 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          VDRNGYL SID+DIYSLLL
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLDGFNLCYEVDRNGYLCSIDADIYSLLL 420

Query: 421 VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE 476
           VGLCEHDHSVDAAKLARLML+KGIRLKPHYAESIIKH+KKF D+ LVMHLGGIR+
Sbjct: 421 VGLCEHDHSVDAAKLARLMLKKGIRLKPHYAESIIKHLKKFEDRELVMHLGGIRK 475

[Close]
BLAST of Carg20742 vs. NCBI nr
Match: XP_008441677.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Cucumis melo] >XP_008441678.1 PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Cucumis melo])

HSP 1 Score: 316.2 bits (809), Expect = 1.9e-82
Identity = 372/475 (78.32%), Postives = 393/475 (82.74%), Query Frame = 0 

Query: 1   MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSR 60
           MALFRI YPR SS    ISTLST  LST+SS+DLFYDHL+KNNGNVEKTLATVKTKLDSR
Sbjct: 1   MALFRISYPRSSSILLNISTLSTFHLSTLSSSDLFYDHLEKNNGNVEKTLATVKTKLDSR 60

Query: 61  CVNQVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDY 120
           CVN+VL+KCS ELSQMGLRFFIWAGRQPNYRH+SFMY+RACELIG+N SPCLLFNVIEDY
Sbjct: 61  CVNEVLYKCSSELSQMGLRFFIWAGRQPNYRHTSFMYSRACELIGINVSPCLLFNVIEDY 120

Query: 121 RREGCLVDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRAXXXXXXXXXXXXXXXXXX 180
           RREGCLVDI +F++ILNLCKE KL KEALSIL KM+EFHLR XXXXXXXXXXXXXXXXXX
Sbjct: 121 RREGCLVDIRIFQIILNLCKEAKLTKEALSILRKMSEFHLRXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF 300
           XXXXX                   GT                                ++
Sbjct: 241 XXXXXRLRIMDKLMEMLEEMEKQGGTCRPNTVTYTSIIQSLCEQGFLLEALKVLDRMEEY 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 GHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRNGYLSSIDSDIYSLLL 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       VDRNGYL  ID+D+YSLLL
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFSLCYEVDRNGYLCYIDADVYSLLL 420

Query: 421 VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE 476
           VGL +HDHSVDAA LARLML+KGIRLKPHYAESIIKH+KKF DQ L+MHLGGIR+
Sbjct: 421 VGLYQHDHSVDAAILARLMLKKGIRLKPHYAESIIKHLKKFEDQELIMHLGGIRK 475

[Close]
BLAST of Carg20742 vs. TAIR10
Match: AT5G47360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 136.3 bits (342), Expect = 4.8e-32
Identity = 67/151 (44.37%), Postives = 99/151 (65.56%), Query Frame = 0 

Query: 13  SFRFKISTLSTLQ-LSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSRCVNQVLHKCSF 72
           S R + S +S L+ L+TVS+A+  Y  LQ    N+EK LA+   +LDS C+N+VL +C  
Sbjct: 13  SLRSQPSKISALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDSSCINEVLRRCDP 72

Query: 73  ELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDYRREGCLVDIGM 132
              Q GLRFFIWAG   ++RHS++MYT+AC+++ +   P L+  VIE YR+E C V++  
Sbjct: 73  NQFQSGLRFFIWAGTLSSHRHSAYMYTKACDILKIRAKPDLIKYVIESYRKEECFVNVKT 132

Query: 133 FKVILNLCKEGKLAKEALSILGKMAEFHLRA 163
            +++L LC +  LA EAL +L K  EF++ A
Sbjct: 133 MRIVLTLCNQANLADEALWVLRKFPEFNVCA 163

[Close]
BLAST of Carg20742 vs. TAIR10
Match: AT5G65820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 5.7e-09
Identity = 37/133 (27.82%), Postives = 72/133 (54.14%), Query Frame = 0 

Query: 30  SSADLFYDHLQKNNGNVEK-TLATVKTKLDSR--CVNQVLHKCSFELSQMGLRFFIWAGR 89
           S  +  Y  L+K +  V K  LA  ++ ++ R   + +VL++C  +   +G RFF+WA +
Sbjct: 81  SDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCG-DAGNLGYRFFVWAAK 140

Query: 90  QPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDYRREG-CLVDIGMFKVILNLCKEGKLA 149
           QP Y HS  +Y    +++   R    ++ +IE+ R+E   L++  +F V++       + 
Sbjct: 141 QPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMV 200

Query: 150 KEALSILGKMAEF 159
           K+A+ +L +M +F
Sbjct: 201 KKAIEVLDEMPKF 212

[Close]
BLAST of Carg20742 vs. TAIR10
Match: AT1G52640.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-08
Identity = 48/168 (28.57%), Postives = 74/168 (44.05%), Query Frame = 0 

Query: 2   ALFRIFYPRPSSFRFKISTLSTLQLSTVSSADL-------FYDHLQKNNGNVEKTLATVK 61
           +L R  Y  P S  F+I   STL L    S DL         DH +    ++E TL    
Sbjct: 8   SLVRALYQTPKSQSFRI--FSTL-LHDPPSPDLVNEISRVLSDH-RNPKDDLEHTLVAYS 67

Query: 62  TKLDSRCVNQVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLF 121
            ++ S  V QVL +C   L     RFF+WA R P++ HS   Y    E++G ++   LL+
Sbjct: 68  PRVSSNLVEQVLKRCK-NLGFPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLW 127

Query: 122 NVIEDYRREGCL-VDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLR 162
           + + + R      +   +F ++        L  EA     +M EF ++
Sbjct: 128 DFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIK 170

[Close]
BLAST of Carg20742 vs. TAIR10
Match: AT3G49730.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 2.6e-06
Identity = 34/129 (26.36%), Postives = 67/129 (51.94%), Query Frame = 0 

Query: 36  YDHLQKNNGNVEK-TLATVKTKLDSR--CVNQVLHKCSFELSQMGLRFFIWAGRQPNYRH 95
           Y  L+ ++  V K  LA  ++ +D R   + +VL +C  +   +G RFF+WA +QP Y H
Sbjct: 71  YRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCG-DAGNLGYRFFLWATKQPGYFH 130

Query: 96  SSFMYTRACELIGLNRSPCLLFNVIEDYRREGC-LVDIGMFKVILNLCKEGKLAKEALSI 155
           S  +      ++   R    ++ +IE+ R+    L++  +F V++       + K+A+ +
Sbjct: 131 SYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEV 190

Query: 156 LGKMAEFHL 161
           L +M ++ L
Sbjct: 191 LDEMPKYGL 198

[Close]
BLAST of Carg20742 vs. Swiss-Prot
Match: sp|Q9LVS3|PP422_ARATH (Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana OX=3702 GN=At5g47360 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.6e-31
Identity = 67/151 (44.37%), Postives = 99/151 (65.56%), Query Frame = 0 

Query: 13  SFRFKISTLSTLQ-LSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSRCVNQVLHKCSF 72
           S R + S +S L+ L+TVS+A+  Y  LQ    N+EK LA+   +LDS C+N+VL +C  
Sbjct: 13  SLRSQPSKISALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDSSCINEVLRRCDP 72

Query: 73  ELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDYRREGCLVDIGM 132
              Q GLRFFIWAG   ++RHS++MYT+AC+++ +   P L+  VIE YR+E C V++  
Sbjct: 73  NQFQSGLRFFIWAGTLSSHRHSAYMYTKACDILKIRAKPDLIKYVIESYRKEECFVNVKT 132

Query: 133 FKVILNLCKEGKLAKEALSILGKMAEFHLRA 163
            +++L LC +  LA EAL +L K  EF++ A
Sbjct: 133 MRIVLTLCNQANLADEALWVLRKFPEFNVCA 163

[Close]
BLAST of Carg20742 vs. Swiss-Prot
Match: sp|Q9FH87|PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana OX=3702 GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-07
Identity = 37/133 (27.82%), Postives = 72/133 (54.14%), Query Frame = 0 

Query: 30  SSADLFYDHLQKNNGNVEK-TLATVKTKLDSR--CVNQVLHKCSFELSQMGLRFFIWAGR 89
           S  +  Y  L+K +  V K  LA  ++ ++ R   + +VL++C  +   +G RFF+WA +
Sbjct: 81  SDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCG-DAGNLGYRFFVWAAK 140

Query: 90  QPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDYRREG-CLVDIGMFKVILNLCKEGKLA 149
           QP Y HS  +Y    +++   R    ++ +IE+ R+E   L++  +F V++       + 
Sbjct: 141 QPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMV 200

Query: 150 KEALSILGKMAEF 159
           K+A+ +L +M +F
Sbjct: 201 KKAIEVLDEMPKF 212

[Close]
BLAST of Carg20742 vs. Swiss-Prot
Match: sp|Q9SSR6|PPR78_ARATH (Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g52640 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-07
Identity = 48/168 (28.57%), Postives = 74/168 (44.05%), Query Frame = 0 

Query: 2   ALFRIFYPRPSSFRFKISTLSTLQLSTVSSADL-------FYDHLQKNNGNVEKTLATVK 61
           +L R  Y  P S  F+I   STL L    S DL         DH +    ++E TL    
Sbjct: 8   SLVRALYQTPKSQSFRI--FSTL-LHDPPSPDLVNEISRVLSDH-RNPKDDLEHTLVAYS 67

Query: 62  TKLDSRCVNQVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLF 121
            ++ S  V QVL +C   L     RFF+WA R P++ HS   Y    E++G ++   LL+
Sbjct: 68  PRVSSNLVEQVLKRCK-NLGFPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLW 127

Query: 122 NVIEDYRREGCL-VDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLR 162
           + + + R      +   +F ++        L  EA     +M EF ++
Sbjct: 128 DFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIK 170

[Close]
BLAST of Carg20742 vs. Swiss-Prot
Match: sp|P0C8A0|PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX=3702 GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 4.7e-05
Identity = 34/129 (26.36%), Postives = 67/129 (51.94%), Query Frame = 0 

Query: 36  YDHLQKNNGNVEK-TLATVKTKLDSR--CVNQVLHKCSFELSQMGLRFFIWAGRQPNYRH 95
           Y  L+ ++  V K  LA  ++ +D R   + +VL +C  +   +G RFF+WA +QP Y H
Sbjct: 71  YRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCG-DAGNLGYRFFLWATKQPGYFH 130

Query: 96  SSFMYTRACELIGLNRSPCLLFNVIEDYRREGC-LVDIGMFKVILNLCKEGKLAKEALSI 155
           S  +      ++   R    ++ +IE+ R+    L++  +F V++       + K+A+ +
Sbjct: 131 SYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEV 190

Query: 156 LGKMAEFHL 161
           L +M ++ L
Sbjct: 191 LDEMPKYGL 198

[Close]
BLAST of Carg20742 vs. TrEMBL
Match: tr|A0A0A0LI44|A0A0A0LI44_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123590 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 5.3e-86
Identity = 394/475 (82.95%), Postives = 415/475 (87.37%), Query Frame = 0 

Query: 1   MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSR 60
           MALFRI  PR SSF   ISTLST  L+T+SS+DLFYDHL+K+NGN++KTLAT+KTKLDSR
Sbjct: 1   MALFRISCPRSSSFLLNISTLSTFHLNTLSSSDLFYDHLEKSNGNLDKTLATLKTKLDSR 60

Query: 61  CVNQVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDY 120
           CVN+VL+KCSFELSQMGLRFFIWAGRQPNYRHSSFMY+RACELIG+N SPCLLFNVIEDY
Sbjct: 61  CVNEVLYKCSFELSQMGLRFFIWAGRQPNYRHSSFMYSRACELIGINVSPCLLFNVIEDY 120

Query: 121 RREGCLVDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRAXXXXXXXXXXXXXXXXXX 180
           RREGCLVDI MFK+ILNLCKE KLAKEALSIL KM+EFHLR XXXXXXXXXXXXXXXXXX
Sbjct: 121 RREGCLVDIRMFKIILNLCKEAKLAKEALSILRKMSEFHLRXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF 300
           XXXXXXXXXXXXXXXXXXXXXXXXGT                                ++
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXGTCSPNTVTYTSIIQSLCEEGHPLEALKVLDRMEEY 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 GYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRNGYLSSIDSDIYSLLL 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          VDRNGYL SID+DIYSLLL
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLDGFNLCYEVDRNGYLCSIDADIYSLLL 420

Query: 421 VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE 476
           VGLCEHDHSVDAAKLARLML+KGIRLKPHYAESIIKH+KKF D+ LVMHLGGIR+
Sbjct: 421 VGLCEHDHSVDAAKLARLMLKKGIRLKPHYAESIIKHLKKFEDRELVMHLGGIRK 475

[Close]
BLAST of Carg20742 vs. TrEMBL
Match: tr|A0A1S3B4L9|A0A1S3B4L9_CUCME (pentatricopeptide repeat-containing protein At5g47360 OS=Cucumis melo OX=3656 GN=LOC103485755 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.2e-82
Identity = 372/475 (78.32%), Postives = 393/475 (82.74%), Query Frame = 0 

Query: 1   MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSR 60
           MALFRI YPR SS    ISTLST  LST+SS+DLFYDHL+KNNGNVEKTLATVKTKLDSR
Sbjct: 1   MALFRISYPRSSSILLNISTLSTFHLSTLSSSDLFYDHLEKNNGNVEKTLATVKTKLDSR 60

Query: 61  CVNQVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDY 120
           CVN+VL+KCS ELSQMGLRFFIWAGRQPNYRH+SFMY+RACELIG+N SPCLLFNVIEDY
Sbjct: 61  CVNEVLYKCSSELSQMGLRFFIWAGRQPNYRHTSFMYSRACELIGINVSPCLLFNVIEDY 120

Query: 121 RREGCLVDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRAXXXXXXXXXXXXXXXXXX 180
           RREGCLVDI +F++ILNLCKE KL KEALSIL KM+EFHLR XXXXXXXXXXXXXXXXXX
Sbjct: 121 RREGCLVDIRIFQIILNLCKEAKLTKEALSILRKMSEFHLRXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDF 300
           XXXXX                   GT                                ++
Sbjct: 241 XXXXXRLRIMDKLMEMLEEMEKQGGTCRPNTVTYTSIIQSLCEQGFLLEALKVLDRMEEY 300

Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 301 GHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDRNGYLSSIDSDIYSLLL 420
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       VDRNGYL  ID+D+YSLLL
Sbjct: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFSLCYEVDRNGYLCYIDADVYSLLL 420

Query: 421 VGLCEHDHSVDAAKLARLMLQKGIRLKPHYAESIIKHVKKFGDQNLVMHLGGIRE 476
           VGL +HDHSVDAA LARLML+KGIRLKPHYAESIIKH+KKF DQ L+MHLGGIR+
Sbjct: 421 VGLYQHDHSVDAAILARLMLKKGIRLKPHYAESIIKHLKKFEDQELIMHLGGIRK 475

[Close]
BLAST of Carg20742 vs. TrEMBL
Match: tr|A0A2P6P8M5|A0A2P6P8M5_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0204361 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-41
Identity = 85/150 (56.67%), Postives = 112/150 (74.67%), Query Frame = 0 

Query: 12  SSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSRCVNQVLHKCSF 71
           SS R K   LS    STVSSA+  Y+HLQ+N GN+EKTLA+++  LD++CV+QVLH+C  
Sbjct: 56  SSIRLKNHKLSISHFSTVSSAETVYNHLQRNGGNIEKTLASMRLNLDAKCVSQVLHRCYP 115

Query: 72  ELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDYRREGCLVDIGM 131
             SQMGLRFFIWAG   +YRHS FM+++ACEL  + ++P ++F+V+E Y  EGC V++ M
Sbjct: 116 TQSQMGLRFFIWAGVHSSYRHSYFMFSKACELYRIRQNPSVIFDVLEAYSVEGCSVNMKM 175

Query: 132 FKVILNLCKEGKLAKEALSILGKMAEFHLR 162
           FKV+ N+CKE KLA EAL +L KM EF LR
Sbjct: 176 FKVVFNMCKEAKLADEALGVLRKMPEFGLR 205

[Close]
BLAST of Carg20742 vs. TrEMBL
Match: tr|A0A061G4E0|A0A061G4E0_THECC (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_015917 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.8e-41
Identity = 84/149 (56.38%), Postives = 110/149 (73.83%), Query Frame = 0 

Query: 13  SFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSRCVNQVLHKCSFE 72
           S   K + + T   ST SSAD F+ HLQK   N+EKTLA V +KLDS CV +VL +C F+
Sbjct: 13  SISSKPNKIFTFLFSTASSADKFFTHLQKKQSNIEKTLALVNSKLDSNCVCEVLERCCFD 72

Query: 73  LSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDYRREGCLVDIGMF 132
            SQMGLRFFIWAG Q NYRHSS+MY++ACE + + ++P L+ +VIE Y+ E CLV++ MF
Sbjct: 73  KSQMGLRFFIWAGLQSNYRHSSYMYSKACEFLKIKQNPFLVLDVIEAYKVEKCLVNVKMF 132

Query: 133 KVILNLCKEGKLAKEALSILGKMAEFHLR 162
           KV+LNLC+E ++  EAL +L KM EF+LR
Sbjct: 133 KVVLNLCREARITDEALLVLRKMPEFNLR 161

[Close]
BLAST of Carg20742 vs. TrEMBL
Match: tr|A0A2P5FIU2|A0A2P5FIU2_9ROSA (Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_066350 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 90/162 (55.56%), Postives = 116/162 (71.60%), Query Frame = 0 

Query: 1   MALFRIFYPRPSSFRFKISTLSTLQLSTVSSADLFYDHLQKNNGNVEKTLATVKTKLDSR 60
           MAL  I     SS R +    ST++ +  SSAD+F++HLQKN GN+EKTL TVK ++DS+
Sbjct: 25  MALCSISRLLSSSIRLQNPKFSTVRSTAASSADIFFNHLQKNGGNIEKTLVTVKAQVDSK 84

Query: 61  CVNQVLHKCSFELSQMGLRFFIWAGRQPNYRHSSFMYTRACELIGLNRSPCLLFNVIEDY 120
           CV+ VL++C    SQMGLRFFIWAG Q +YRH+S+MY++AC    + ++P LL++VIE Y
Sbjct: 85  CVSGVLYRCYPSQSQMGLRFFIWAGLQSDYRHTSYMYSKACNFYKITQNPKLLYDVIEAY 144

Query: 121 RREGCLVDIGMFKVILNLCKEGKLAKEALSILGKMAEFHLRA 163
           R E C V +  FKVILNL KE KLA EAL +L KM EF LRA
Sbjct: 145 RAERCSVTVKTFKVILNLYKEAKLADEALWVLRKMPEFGLRA 186

The following BLAST results are available for this feature:
BLAST of Carg20742 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022928928.12.9e-10499.37pentatricopeptide repeat-containing protein At5g47360 [Cucurbita moschata][more]
XP_023551479.15.0e-10498.95pentatricopeptide repeat-containing protein At5g47360 [Cucurbita pepo subsp. pep... [more]
XP_022969835.11.2e-9797.26pentatricopeptide repeat-containing protein At5g47360 [Cucurbita maxima][more]
XP_004139002.18.0e-8682.95PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Cucumis sativu... [more]
XP_008441677.11.9e-8278.32PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Cucumis melo] ... [more]
BLAST of Carg20742 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47360.14.8e-3244.37Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G65820.15.7e-0927.82Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G52640.12.2e-0828.57Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G49730.12.6e-0626.36Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Carg20742 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LVS3|PP422_ARATH8.6e-3144.37Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana OX... [more]
sp|Q9FH87|PP447_ARATH1.0e-0727.82Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th... [more]
sp|Q9SSR6|PPR78_ARATH3.9e-0728.57Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidop... [more]
sp|P0C8A0|PP275_ARATH4.7e-0526.36Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg20742 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LI44|A0A0A0LI44_CUCSA5.3e-8682.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123590 PE=4 SV=1[more]
tr|A0A1S3B4L9|A0A1S3B4L9_CUCME1.2e-8278.32pentatricopeptide repeat-containing protein At5g47360 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2P6P8M5|A0A2P6P8M5_ROSCH3.1e-4156.67Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0204361 P... [more]
tr|A0A061G4E0|A0A061G4E0_THECC6.8e-4156.38Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobro... [more]
tr|A0A2P5FIU2|A0A2P5FIU2_9ROSA2.0e-4055.56Pentatricopeptide repeat OS=Trema orientalis OX=63057 GN=TorRG33x02_066350 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20742-RACarg20742-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 343..372
e-value: 0.0056
score: 16.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 269..318
e-value: 5.8E-14
score: 51.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 235..264
e-value: 3.8E-5
score: 21.6
coord: 272..305
e-value: 1.0E-8
score: 32.8
coord: 166..198
e-value: 4.9E-6
score: 24.4
coord: 200..234
e-value: 2.0E-8
score: 31.9
coord: 343..375
e-value: 2.1E-6
score: 25.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..409
score: 6.588
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 412..446
score: 8.616
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 128..162
score: 6.533
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 163..197
score: 11.301
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 340..374
score: 9.778
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 233..267
score: 10.38
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 198..232
score: 12.77
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 270..304
score: 12.77
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 305..339
score: 8.966
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 338..471
e-value: 2.6E-16
score: 62.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 263..335
e-value: 3.1E-19
score: 71.2
coord: 193..262
e-value: 5.3E-20
score: 73.7
coord: 36..192
e-value: 1.1E-14
score: 56.3
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 122..261
e-value: 3.0E-15
score: 56.0
NoneNo IPR availablePANTHERPTHR24015:SF719SUBFAMILY NOT NAMEDcoord: 2..472
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 2..472

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20742ClCG06G010030Watermelon (Charleston Gray)carwcgB0717
Carg20742CmaCh15G014360Cucurbita maxima (Rimu)carcmaB1033
Carg20742CmoCh15G015130Cucurbita moschata (Rifu)carcmoB1004
Carg20742Lsi09G010700Bottle gourd (USVL1VR-Ls)carlsiB677
Carg20742Cla97C06G119440Watermelon (97103) v2carwmbB0775
Carg20742Bhi12G001204Wax gourdcarwgoB0874
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg20742Cucurbita pepo (Zucchini)carcpeB1040