Carg20579 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20579
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MADS-box protein CMB1
Location	Cucurbita_argyrosperma_scaffold_113 : 428525 .. 429216 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCTATGTATTCCTTTGAATGGGCAGTTGGAAGAAAGCAGTGCAGCTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGGTAAAATTTTATATTTATTATTATTATAAATTAATTAATTAATCAAAAAAAAAAAAACCCCTTTTATTTATTTATTTTATATAAATTTAAATATCTAATTTAATTTATGGGTTATTTATAGTTACAATCCAGCGGAGGTTTCAAATCAAGAAAACGCCATAAACTCGGAGCCAGAAGGTAATGAGTTGCCTTCGCATTGGATGATGCTTTGATCTTATCTTATAAAAATATATTACATTAAACCATACTCTATTTCAACCCATTGTGACAATAATATATGTAGTAATTAATACATGAACCATATATGATCTAATGCTCGATTTTCATCTAATTTTTTGTTCTCGAGTTCGGTTGAAATATGGTTACGTTGTTTAATTTCTTCGGTGGAAGACTGATTTTGGATAGCGAGATTTGAACCTCTGATCTTGTGATCGAGAGAAACTTACATTGACTTTTGATTTCTCTAGTTGACTTTTGGTCTTTTTGATTGAACGTTGCTAAAAATATGTTGAAATTTGTAATTCTCGATTGTATGACTGTATC

mRNA sequence

ATGTGGCTATGTATTCCTTTGAATGGGCAGTTGGAAGAAAGCAGTGCAGCTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCGGAGGTTTCAAATCAAGAAAACGCCATAAACTCGGAGCCAGAAGGTAATGAGTTGCCTTCGCATTGGATGATGCTTTGATCTTATCTTATAAAAATATATTACATTAAACCATACTCTATTTCAACCCATTGTGACAATAATATATGTAGTAATTAATACATGAACCATATATGATCTAATGCTCGATTTTCATCTAATTTTTTGTTCTCGAGTTCGGTTGAAATATGGTTACGTTGTTTAATTTCTTCGGTGGAAGACTGATTTTGGATAGCGAGATTTGAACCTCTGATCTTGTGATCGAGAGAAACTTACATTGACTTTTGATTTCTCTAGTTGACTTTTGGTCTTTTTGATTGAACGTTGCTAAAAATATGTTGAAATTTGTAATTCTCGATTGTATGACTGTATC

Coding sequence (CDS)

ATGTGGCTATGTATTCCTTTGAATGGGCAGTTGGAAGAAAGCAGTGCAGCTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGAGGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCGGAGGTTTCAAATCAAGAAAACGCCATAAACTCGGAGCCAGAAGGTAATGAGTTGCCTTCGCATTGGATGATGCTTTGA

Protein sequence

MWLCIPLNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML

Homology

[Close]

BLAST of Carg20579 vs. NCBI nr
Match: XP_023538103.1 (truncated transcription factor CAULIFLOWER A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-32
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 7   LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 66
           L  +LEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE
Sbjct: 167 LRRKLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 226

Query: 67  PEGNELPSHWMML 80
           PEGNELPSHWMML
Sbjct: 227 PEGNELPSHWMML 239

[Close]

BLAST of Carg20579 vs. NCBI nr
Match: XP_022951685.1 (truncated transcription factor CAULIFLOWER A [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 9.4e-32
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 7   LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 66
           L  +LEESSA LHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE
Sbjct: 167 LRRKLEESSAGLHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 226

Query: 67  PEGNELPSHWMML 80
           PEGNELPSHWMML
Sbjct: 227 PEGNELPSHWMML 239

[Close]

BLAST of Carg20579 vs. NCBI nr
Match: XP_023002153.1 (truncated transcription factor CAULIFLOWER A [Cucurbita maxima])

HSP 1 Score: 142.1 bits (357), Expect = 8.0e-31
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 7   LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSE 66
           L  +LEESSAALHSSWEASEPNNLHYCGQPEAFLQ NNIALENSYNPAEVSNQENAINSE
Sbjct: 167 LRRKLEESSAALHSSWEASEPNNLHYCGQPEAFLQSNNIALENSYNPAEVSNQENAINSE 226

Query: 67  PEGNELPSHWMML 80
           PEGNELP HWMML
Sbjct: 227 PEGNELPLHWMML 239

[Close]

BLAST of Carg20579 vs. NCBI nr
Match: XP_011657406.1 (PREDICTED: MADS-box protein CMB1 [Cucumis sativus] >XP_011657407.1 PREDICTED: MADS-box protein CMB1 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 4.1e-19
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 7   LNGQLEESSAAL-HSSWEASEPNNLHYCGQPEAFLQGNN--IALENSYNPAEVSNQENAI 66
           L  +LEESSAA+ H+SW++SEPNNL YC QPEAFLQ NN  IALENSYNP EV+N+EN +
Sbjct: 167 LRKKLEESSAAIHHTSWDSSEPNNLQYCRQPEAFLQLNNNIIALENSYNPTEVTNEENVV 226

Query: 67  NSEPEGNELPSHWMML 80
           NS  +GN L SHWM+L
Sbjct: 227 NSGADGNGLSSHWMLL 242

[Close]

BLAST of Carg20579 vs. NCBI nr
Match: KGN47661.1 (hypothetical protein Csa_6G367080 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 4.1e-19
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 7   LNGQLEESSAAL-HSSWEASEPNNLHYCGQPEAFLQGNN--IALENSYNPAEVSNQENAI 66
           L  +LEESSAA+ H+SW++SEPNNL YC QPEAFLQ NN  IALENSYNP EV+N+EN +
Sbjct: 114 LRKKLEESSAAIHHTSWDSSEPNNLQYCRQPEAFLQLNNNIIALENSYNPTEVTNEENVV 173

Query: 67  NSEPEGNELPSHWMML 80
           NS  +GN L SHWM+L
Sbjct: 174 NSGADGNGLSSHWMLL 189

[Close]

BLAST of Carg20579 vs. TrEMBL
Match: tr|A0A0A0KIR6|A0A0A0KIR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367080 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-19
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 0


Query: 7   LNGQLEESSAAL-HSSWEASEPNNLHYCGQPEAFLQGNN--IALENSYNPAEVSNQENAI 66
           L  +LEESSAA+ H+SW++SEPNNL YC QPEAFLQ NN  IALENSYNP EV+N+EN +
Sbjct: 114 LRKKLEESSAAIHHTSWDSSEPNNLQYCRQPEAFLQLNNNIIALENSYNPTEVTNEENVV 173

Query: 67  NSEPEGNELPSHWMML 80
           NS  +GN L SHWM+L
Sbjct: 174 NSGADGNGLSSHWMLL 189

[Close]

BLAST of Carg20579 vs. TrEMBL
Match: tr|A0A1S4DVG4|A0A1S4DVG4_CUCME (MADS-box protein CMB1 OS=Cucumis melo OX=3656 GN=LOC103488456 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-05
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 7   LNGQLEESSAAL-HSSWEASEPNNLHYCGQPEAFLQGNN--IALEN 50
           L  +LEESS A+ H+SW++SE NNL YC QPEAFLQ NN  IALEN
Sbjct: 167 LRKKLEESSGAIHHTSWDSSEANNLQYCRQPEAFLQLNNNIIALEN 212

The following BLAST results are available for this feature:

BLAST of Carg20579 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023538103.1	3.2e-32	95.89	truncated transcription factor CAULIFLOWER A [Cucurbita pepo subsp. pepo]	[more]
XP_022951685.1	9.4e-32	94.52	truncated transcription factor CAULIFLOWER A [Cucurbita moschata]	[more]
XP_023002153.1	8.0e-31	93.15	truncated transcription factor CAULIFLOWER A [Cucurbita maxima]	[more]
XP_011657406.1	4.1e-19	68.42	PREDICTED: MADS-box protein CMB1 [Cucumis sativus] >XP_011657407.1 PREDICTED: MA...	[more]
KGN47661.1	4.1e-19	68.42	hypothetical protein Csa_6G367080 [Cucumis sativus]	[more]

BLAST of Carg20579 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg20579 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20579 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KIR6\|A0A0A0KIR6_CUCSA	2.7e-19	68.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367080 PE=4 SV=1	[more]
tr\|A0A1S4DVG4\|A0A1S4DVG4_CUCME	1.7e-05	67.39	MADS-box protein CMB1 OS=Cucumis melo OX=3656 GN=LOC103488456 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20579-RA	Carg20579-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20579	Csa6G367080	Cucumber (Chinese Long) v2	carcuB0673
Carg20579	CsGy6G019330	Cucumber (Gy14) v2	carcgybB0649

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20579	Watermelon (97103) v2	carwmbB0679
Carg20579	Wax gourd	carwgoB0764
Carg20579	Wax gourd	carwgoB0766
Carg20579	Silver-seed gourd	carcarB164
Carg20579	Cucumber (Gy14) v1	carcgyB0729
Carg20579	Cucurbita maxima (Rimu)	carcmaB0920
Carg20579	Cucurbita maxima (Rimu)	carcmaB0921
Carg20579	Cucurbita moschata (Rifu)	carcmoB0893
Carg20579	Cucurbita moschata (Rifu)	carcmoB0894
Carg20579	Cucurbita pepo (Zucchini)	carcpeB0924
Carg20579	Cucurbita pepo (Zucchini)	carcpeB0925
Carg20579	Wild cucumber (PI 183967)	carcpiB0683
Carg20579	Cucumber (Chinese Long) v3	carcucB0685
Carg20579	Bottle gourd (USVL1VR-Ls)	carlsiB593
Carg20579	Melon (DHL92) v3.5.1	carmeB0649
Carg20579	Melon (DHL92) v3.6.1	carmedB0659
Carg20579	Watermelon (Charleston Gray)	carwcgB0633
Carg20579	Watermelon (97103) v1	carwmB0649