Carg20544 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20544
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Alpha-ketoglutarate-dependent dioxygenase alkB-like protein 2
Location	Cucurbita_argyrosperma_scaffold_113 : 188530 .. 189807 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGCGTTCCTTCTGATATTCCACATGGTATACCAACACAGATAAACGTGATCCCTGGTGAAGAACCTTCAGTAAAGACAGCAAAGAAGATATACGACAAGAAATTTTCGGAGTTATCAGGAAACGACATCTTCAAAGGCGACGTTCCTCCGTCGTCTGCAGAGAAACCATTGAGCATCGCAAAATTACGCGAAATGAGCGGGAGCGACATATTTGCAGACGGGAAGGTAGAGACCCGAGACTACTTAGGCGGGGTACGCAAACCCCCGGGCGGAGAGAGCAGCATTGCATTGGTTTAAGTAATCTAGGTTCTAACCAAAACTCAATACTTTCAGTTGGTGGGGAGATGGATATTATGAAAATTGTGATCTGGTTTGGGTAATTATTATGTTTTAGGGTTAACTATGGAGTCTGCTAATTGAGTTATGTACTTGGTTAGTTGTGTGTGCAGTTTTATGTTGGTTGGTTGGTTGGTTGGTTGGTTGTCTTCTTTCTTCCTATTTTACTCTTTCCATCTCTTGGGGTTCTCAATTTGTTTATCATTATATTGATTAATTGATTCGGTTATTATGCTCAACCCTAAACCCTTTTTTTATTTCCTATTTTAATATTTTCATCTTTTAATTAGGATAAATAAAATTTTAATCTTAATGAGCCAATATAAAGTAGAGATGTCCACGGGATGAAGCGGGAACGGGGAAGTCTTCCCTGTTTCCATTCCCACTACCTATTTCATTTTTCGTCCTTACGAAATTCTCCATTTAACTTTGAAGATCAAGTCTGGGAAGTAAGCAGCCCCTTTGACATCTCTTTGTCTGCAAAGAATTCTCGATGCAGAAACATAGAGACAAAAGGCTGATCTTTGAATAGGAAAAAGAGTGGATTTGCAAAATCCCAAATGAATTGGCTTATTCGAAAAAAATATTGATCGTTGGAAGATGATCCGCAAGGTTGCACTCTGCAAGGACTTCGAATCATTCTTTTCATCAGAAATGATCCGCTTGCCCTAAAATGACCTTAATTTTTACCTGTTTATTATTCTTGAAAAAAATAGTTATTTCAAAATTTTCATTTCTTAATATAATCTTTTTTAAAAATCCTAATAAATCAATATTAGGTTATATCAATATAATTTTTAAAAATTTAAAATTTAATATCTTTAACCAAAAAAATTATAAGGGAAAGTAATATTTATAAATATAAAATTAAAAAAAAAATTAAATGGTTATCAATTTTTTTTTTTTTTTTTTTTTACAATAAAGATTAAAATTTAA

mRNA sequence

ATGGCCTGCGTTCCTTCTGATATTCCACATGGTATACCAACACAGATAAACGTGATCCCTGGTGAAGAACCTTCAGTAAAGACAGCAAAGAAGATATACGACAAGAAATTTTCGGAGTTATCAGGAAACGACATCTTCAAAGGCGACGTTCCTCCGTCGTCTGCAGAGAAACCATTGAGCATCGCAAAATTACGCGAAATGAGCGGGAGCGACATATTTGCAGACGGGAAGGTAGAGACCCGAGACTACTTAGGCGGGGTACGCAAACCCCCGGGCGGAGAGAGCAGCATTGCATTGATTAAAATTTAA

Coding sequence (CDS)

ATGGCCTGCGTTCCTTCTGATATTCCACATGGTATACCAACACAGATAAACGTGATCCCTGGTGAAGAACCTTCAGTAAAGACAGCAAAGAAGATATACGACAAGAAATTTTCGGAGTTATCAGGAAACGACATCTTCAAAGGCGACGTTCCTCCGTCGTCTGCAGAGAAACCATTGAGCATCGCAAAATTACGCGAAATGAGCGGGAGCGACATATTTGCAGACGGGAAGGTAGAGACCCGAGACTACTTAGGCGGGGTACGCAAACCCCCGGGCGGAGAGAGCAGCATTGCATTGATTAAAATTTAA

Protein sequence

MACVPSDIPHGIPTQINVIPGEEPSVKTAKKIYDKKFSELSGNDIFKGDVPPSSAEKPLSIAKLREMSGSDIFADGKVETRDYLGGVRKPPGGESSIALIKI

Homology

[Close]

BLAST of Carg20544 vs. NCBI nr
Match: XP_022132174.1 (uncharacterized protein LOC111005096 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-18
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 17  NVIPGEEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDG 76
           N IPGEEPSVKTAKKIYDKKFSELSGNDI XXXXXXXXXXXXXXXXXXXXXXXXXXXXDG
Sbjct: 209 NAIPGEEPSVKTAKKIYDKKFSELSGNDIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXDG 268

Query: 77  KVETRDYLGGVRKPPGGESSIALI 101
           KVETRDYLGGVRKPPGGESSIAL+
Sbjct: 269 KVETRDYLGGVRKPPGGESSIALV 292

[Close]

BLAST of Carg20544 vs. NCBI nr
Match: XP_022951840.1 (uncharacterized protein LOC111454570 [Cucurbita moschata] >XP_023002695.1 uncharacterized protein LOC111496478 [Cucurbita maxima] >XP_023537292.1 uncharacterized protein LOC111798406 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.1 bits (248), Expect = 4.5e-18
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 11  GIPTQINVIPGEEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXX 70
           G P  INVIPGEEPSVKTAKKIYDKKFSELSG   XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 202 GEPDNINVIPGEEPSVKTAKKIYDKKFSELSGXXXXXXXXXXXXXXXXXXXXXXXXXXXX 261

Query: 71  XXXXDGKVETRDYLGGVRKPPGGESSIALI 101
           XXXXDGKVETRDYLGGVRKPPGGESSIAL+
Sbjct: 262 XXXXDGKVETRDYLGGVRKPPGGESSIALV 291

[Close]

BLAST of Carg20544 vs. NCBI nr
Match: XP_022997233.1 (uncharacterized protein LOC111492197 [Cucurbita maxima])

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 81/90 (90.00%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 11  GIPTQINVIPGEEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXX 70
           G P    VIPGEEPSVKTAKKIYDKKFSELSGN  XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 202 GEPDDRCVIPGEEPSVKTAKKIYDKKFSELSGNXXXXXXXXXXXXXXXXXXXXXXXXXXX 261

Query: 71  XXXXDGKVETRDYLGGVRKPPGGESSIALI 101
           XXXXDGKVE RDYLGGVRKPPGGESSIAL+
Sbjct: 262 XXXXDGKVEARDYLGGVRKPPGGESSIALV 291

[Close]

BLAST of Carg20544 vs. NCBI nr
Match: XP_023547326.1 (uncharacterized protein LOC111806182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 81/90 (90.00%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 11  GIPTQINVIPGEEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXX 70
           G P    VIPGEEPSVKTAKKIYDKKFSELSGN  XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 202 GEPDDRCVIPGEEPSVKTAKKIYDKKFSELSGNXXXXXXXXXXXXXXXXXXXXXXXXXXX 261

Query: 71  XXXXDGKVETRDYLGGVRKPPGGESSIALI 101
           XXXXDGKVE RDYLGGVRKPPGGESSIAL+
Sbjct: 262 XXXXDGKVEARDYLGGVRKPPGGESSIALV 291

[Close]

BLAST of Carg20544 vs. NCBI nr
Match: XP_022961971.1 (uncharacterized protein LOC111462582 isoform X2 [Cucurbita moschata])

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 80/90 (88.89%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 11  GIPTQINVIPGEEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXX 70
           G P    VIPGEEPSVKTAKKIYDKKFSELSGN  XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 202 GEPDDRCVIPGEEPSVKTAKKIYDKKFSELSGNXXXXXXXXXXXXXXXXXXXXXXXXXXX 261

Query: 71  XXXXDGKVETRDYLGGVRKPPGGESSIALI 101
           XXXXDGKV  RDYLGGVRKPPGGESSIAL+
Sbjct: 262 XXXXDGKVGARDYLGGVRKPPGGESSIALV 291

[Close]

BLAST of Carg20544 vs. TAIR10
Match: AT1G78150.3 (unknown protein)

HSP 1 Score: 83.6 bits (205), Expect = 7.9e-17
Identity = 44/79 (55.70%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 22  EEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGKVETR 81
           E+ SVKTAKKIYDKKF+ELSGNDI                             DGKVE R
Sbjct: 225 EDSSVKTAKKIYDKKFAELSGNDIFKGDAASSNVEKHLSQAKLKEIGGNNIFADGKVEAR 284

Query: 82  DYLGGVRKPPGGESSIALI 101
           DYLGGVRKPPGGE+SIAL+
Sbjct: 285 DYLGGVRKPPGGETSIALV 303

[Close]

BLAST of Carg20544 vs. TAIR10
Match: AT4G39860.1 (unknown protein)

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-12
Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 15  QINVIPGEEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 74
           Q N++  EEP VKT+KKI+++KF EL+GN I    XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 214 QSNILFSEEPVVKTSKKIHNQKFQELTGNGIFKGDXXXXXXXXXXXXXXXXXXXXXXXXX 273

Query: 75  DGKVETRDYLGGVRKPPGGESSIALI 101
               E+RDY GGVRKPPGGESSI+L+
Sbjct: 274 XXXXESRDYFGGVRKPPGGESSISLV 299

[Close]

BLAST of Carg20544 vs. TAIR10
Match: AT1G35780.1 (unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.3e-10
Identity = 33/78 (42.31%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 26  VKTAKKIYDKKFSELSGNDI---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGKVETRD 85
           +KTAKKI D+KF++LSGN++                                D K ++RD
Sbjct: 209 LKTAKKIADRKFTDLSGNNVFKSDVSSPSSATAERLLSTAKLKEISGNDIFADAKAQSRD 268

Query: 86  YLGGVRKPPGGESSIALI 101
           Y GGVRKPPGGESSIAL+
Sbjct: 269 YFGGVRKPPGGESSIALV 286

[Close]

BLAST of Carg20544 vs. TAIR10
Match: AT2G22270.1 (unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.8e-06
Identity = 32/87 (36.78%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 17  NVIPGEEPSVKTAKKIYDKK--FSELSGNDI-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 76
           N +  EE  VK++KKI+++K  F  L+ N I                             
Sbjct: 242 NRLFSEEHVVKSSKKIHNQKSQFQGLTSNGIFKSDKIPPGYSEKMQSSAKKREMSGHNIF 301

Query: 77  XDGKVETRDYLGGVRKPPGGESSIALI 101
            DGK E RDY GG R+PPGGESSI+L+
Sbjct: 302 ADGKSEYRDYYGGARRPPGGESSISLV 328

[Close]

BLAST of Carg20544 vs. TrEMBL
Match: tr|A0A059BK90|A0A059BK90_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F003101 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.9e-15
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 15  QINVIPGEEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 74
           Q N++  EEP +KTAKKIYDKKF+ELSGNDI   XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 94  QSNIMSTEEPVLKTAKKIYDKKFTELSGNDIFKGXXXXXXXXXXXXXXXXXXXXXXXXXX 153

Query: 75  DGKVETRDYLGGVRKPPGGESSIALI 101
           DGKVE+RDYLGGVRKPPGGESSI+L+
Sbjct: 154 DGKVESRDYLGGVRKPPGGESSISLV 179

[Close]

BLAST of Carg20544 vs. TrEMBL
Match: tr|V4SHU2|V4SHU2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10001961mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 47/86 (54.65%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 15  QINVIPGEEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 74
           Q ++   EEP +KTAKKIYDKKFSELSGNDI                             
Sbjct: 220 QSSITSTEEPVMKTAKKIYDKKFSELSGNDIFKGDVPPSSAEKPLSVAKLREMSGSNIFA 279

Query: 75  DGKVETRDYLGGVRKPPGGESSIALI 101
           DGKVE+RDYLGGVRKPPGGESSIAL+
Sbjct: 280 DGKVESRDYLGGVRKPPGGESSIALV 305

[Close]

BLAST of Carg20544 vs. TrEMBL
Match: tr|A0A059BKX4|A0A059BKX4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00312 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-14
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 15  QINVIPGEEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 74
           Q N++  EEP +KTAKKIYDKK++ELSGNDI    XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 110 QSNIMSTEEPVLKTAKKIYDKKYTELSGNDIFKGDXXXXXXXXXXXXXXXXXXXXXXXXX 169

Query: 75  DGKVETRDYLGGVRKPPGGESSIALI 101
           DGKVE+RDYLGGVRKPPGGESSI+L+
Sbjct: 170 DGKVESRDYLGGVRKPPGGESSISLV 195

[Close]

BLAST of Carg20544 vs. TrEMBL
Match: tr|A5B480|A5B480_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030871 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-14
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 15  QINVIPGEEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 74
           Q N++ GEEP VKTAKKI+D+KF+EL+GNDI  XXXXXXXXXXXXXXXXXXXXXXXXXX 
Sbjct: 257 QSNILFGEEPVVKTAKKIHDQKFAELTGNDIFKXXXXXXXXXXXXXXXXXXXXXXXXXXA 316

Query: 75  DGKVETRDYLGGVRKPPGGESSIALI 101
           DGK E+RDYLGGVRKPPGGESSIALI
Sbjct: 317 DGKAESRDYLGGVRKPPGGESSIALI 342

[Close]

BLAST of Carg20544 vs. TrEMBL
Match: tr|D7KV81|D7KV81_ARALL (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_476982 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-14
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 21  GEEPSVKTAKKIYDKKFSELSGNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGKVET 80
           GEE SVKTAKKIYDKKF+ELSGNDI  XXXXXXXXXXXXXXXXXXXXXXXXXXXDGKVE 
Sbjct: 195 GEESSVKTAKKIYDKKFAELSGNDIFKXXXXXXXXXXXXXXXXXXXXXXXXXXXDGKVEA 254

Query: 81  RDYLGGVRKPPGGESSIALI 101
           RDYLGGVRKPPGGE+SIAL+
Sbjct: 255 RDYLGGVRKPPGGETSIALV 274

The following BLAST results are available for this feature:

BLAST of Carg20544 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132174.1	2.6e-18	96.43	uncharacterized protein LOC111005096 [Momordica charantia]	[more]
XP_022951840.1	4.5e-18	92.22	uncharacterized protein LOC111454570 [Cucurbita moschata] >XP_023002695.1 unchar...	[more]
XP_022997233.1	1.9e-16	90.00	uncharacterized protein LOC111492197 [Cucurbita maxima]	[more]
XP_023547326.1	1.9e-16	90.00	uncharacterized protein LOC111806182 [Cucurbita pepo subsp. pepo]	[more]
XP_022961971.1	1.2e-15	88.89	uncharacterized protein LOC111462582 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg20544 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78150.3	7.9e-17	55.70	unknown protein	[more]
AT4G39860.1	4.5e-12	70.93	unknown protein	[more]
AT1G35780.1	9.3e-10	42.31	unknown protein	[more]
AT2G22270.1	4.8e-06	36.78	unknown protein	[more]

BLAST of Carg20544 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20544 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A059BK90\|A0A059BK90_EUCGR	8.9e-15	83.72	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00...	[more]
tr\|V4SHU2\|V4SHU2_9ROSI	1.2e-14	54.65	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10001961mg PE=4 ...	[more]
tr\|A0A059BKX4\|A0A059BKX4_EUCGR	2.0e-14	81.40	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F00312 PE=4 SV...	[more]
tr\|A5B480\|A5B480_VITVI	2.0e-14	83.72	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030871 PE=4 SV=1	[more]
tr\|D7KV81\|D7KV81_ARALL	2.6e-14	91.25	Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025131	DUF4057

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20544-RA	Carg20544-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025131	Domain of unknown function DUF4057	PFAM	PF13266	DUF4057	coord: 15..98 e-value: 2.2E-44 score: 152.3
None	No IPR available	PANTHER	PTHR31132	FAMILY NOT NAMED	coord: 15..100
None	No IPR available	PANTHER	PTHR31132:SF2	EXPRESSED PROTEIN	coord: 15..100

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20544	Cucumber (Gy14) v2	carcgybB0648
Carg20544	Cucumber (Gy14) v1	carcgyB0725
Carg20544	Cucurbita maxima (Rimu)	carcmaB0920
Carg20544	Cucurbita maxima (Rimu)	carcmaB0921
Carg20544	Cucurbita moschata (Rifu)	carcmoB0893
Carg20544	Cucurbita moschata (Rifu)	carcmoB0894
Carg20544	Cucurbita pepo (Zucchini)	carcpeB0924
Carg20544	Cucurbita pepo (Zucchini)	carcpeB0925
Carg20544	Wild cucumber (PI 183967)	carcpiB0682
Carg20544	Cucumber (Chinese Long) v2	carcuB0672
Carg20544	Cucumber (Chinese Long) v3	carcucB0684
Carg20544	Bottle gourd (USVL1VR-Ls)	carlsiB593
Carg20544	Melon (DHL92) v3.5.1	carmeB0649
Carg20544	Melon (DHL92) v3.5.1	carmeB0650
Carg20544	Melon (DHL92) v3.6.1	carmedB0660
Carg20544	Melon (DHL92) v3.6.1	carmedB0659
Carg20544	Watermelon (Charleston Gray)	carwcgB0631
Carg20544	Watermelon (Charleston Gray)	carwcgB0633
Carg20544	Watermelon (97103) v1	carwmB0650
Carg20544	Watermelon (97103) v1	carwmB0649
Carg20544	Watermelon (97103) v2	carwmbB0677
Carg20544	Watermelon (97103) v2	carwmbB0679
Carg20544	Wax gourd	carwgoB0765
Carg20544	Wax gourd	carwgoB0767