Carg20520 (gene) Silver-seed gourd

Overview
NameCarg20520
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat
LocationCucurbita_argyrosperma_scaffold_113 : 46213 .. 47073 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACTGGCTGGAGTTGAACCAAACAAGATCACTTTTGTGGGTGTTCTATCAGCTTGTAGCCATGGTGGTTTGGTGGATGAAGCACTGTATTACTTTGAAGTAATGCAGAAGCAGTACAAGATTGAGCCTGTAATGGACCATTTTGCATGCATGATTGACATGTATATGAGGTTGGGTCGGGTGGAAGAAGCTTTTGATGTAGTCAAGAAGATGAACTTTGAGCCTAATGAAGTTATATGGTCCATGATAATTGCAGGATGTCGAAGTCACGGGAACTCCGAATTGGGGTTTTACGCTGCCGAGCAGTTACTCAAACTCAGGCCGAAAGACACGGAGACCTATGTCTCTCTGTTAAATATGTACCTCTCTGCAGGGAGATGGAAGGATGTTTCCAAAGTGAGGAAATTAATGAAAGAAGAAAAGCTTGGAAAGTTGAAGGACTGGAGCTGGATTACCATCAAAGAAAAAGTTTATTCATTTAAACCCAATGACAAATCACACCATCAAACTGCAGAGATGTACGAGCTGTTGGAGACTTTACTCGACGAAGTAAAACCTCTTGGTTACGAGCCTGGTCAATATACAGAGGCAATCGAAGAGGAGAACGGCGAGGAAACAGTGTTCTCGTCCACCATTTATCACAGCGAAAAGTTAGCTGTTGCTTTTAGTTTGTTAAACCTGCCAACAGCTACCCCGATTCGGGTTGTCAAGAGCATCACCATGTGTAGGGATTGCCATAATTTTATCCGATTCATTTCATTATTGACAGGCAGGGAAATCGTTATCCGAGATAAAAAGCAGCTTCACAAGTTTTCGAACGGATACTGTTCTTGTAGAGGTTTCGGAGATCTTCTCTAA

mRNA sequence

ATGAGACTGGCTGGAGTTGAACCAAACAAGATCACTTTTGTGGGTGTTCTATCAGCTTGTAGCCATGGTGGTTTGGTGGATGAAGCACTGTATTACTTTGAAGTAATGCAGAAGCAGTACAAGATTGAGCCTGTAATGGACCATTTTGCATGCATGATTGACATGTATATGAGGTTGGGTCGGGTGGAAGAAGCTTTTGATGTAGTCAAGAAGATGAACTTTGAGCCTAATGAAGTTATATGGTCCATGATAATTGCAGGATGTCGAAGTCACGGGAACTCCGAATTGGGGTTTTACGCTGCCGAGCAGTTACTCAAACTCAGGCCGAAAGACACGGAGACCTATGTCTCTCTGTTAAATATGTACCTCTCTGCAGGGAGATGGAAGGATGTTTCCAAAGTGAGGAAATTAATGAAAGAAGAAAAGCTTGGAAAGTTGAAGGACTGGAGCTGGATTACCATCAAAGAAAAAGTTTATTCATTTAAACCCAATGACAAATCACACCATCAAACTGCAGAGATGTACGAGCTGTTGGAGACTTTACTCGACGAAGTAAAACCTCTTGGTTACGAGCCTGGTCAATATACAGAGGCAATCGAAGAGGAGAACGGCGAGGAAACAGTGTTCTCGTCCACCATTTATCACAGCGAAAAGTTAGCTGTTGCTTTTAGTTTGTTAAACCTGCCAACAGCTACCCCGATTCGGGTTGTCAAGAGCATCACCATGTGTAGGGATTGCCATAATTTTATCCGATTCATTTCATTATTGACAGGCAGGGAAATCGTTATCCGAGATAAAAAGCAGCTTCACAAGTTTTCGAACGGATACTGTTCTTGTAGAGGTTTCGGAGATCTTCTCTAA

Coding sequence (CDS)

ATGAGACTGGCTGGAGTTGAACCAAACAAGATCACTTTTGTGGGTGTTCTATCAGCTTGTAGCCATGGTGGTTTGGTGGATGAAGCACTGTATTACTTTGAAGTAATGCAGAAGCAGTACAAGATTGAGCCTGTAATGGACCATTTTGCATGCATGATTGACATGTATATGAGGTTGGGTCGGGTGGAAGAAGCTTTTGATGTAGTCAAGAAGATGAACTTTGAGCCTAATGAAGTTATATGGTCCATGATAATTGCAGGATGTCGAAGTCACGGGAACTCCGAATTGGGGTTTTACGCTGCCGAGCAGTTACTCAAACTCAGGCCGAAAGACACGGAGACCTATGTCTCTCTGTTAAATATGTACCTCTCTGCAGGGAGATGGAAGGATGTTTCCAAAGTGAGGAAATTAATGAAAGAAGAAAAGCTTGGAAAGTTGAAGGACTGGAGCTGGATTACCATCAAAGAAAAAGTTTATTCATTTAAACCCAATGACAAATCACACCATCAAACTGCAGAGATGTACGAGCTGTTGGAGACTTTACTCGACGAAGTAAAACCTCTTGGTTACGAGCCTGGTCAATATACAGAGGCAATCGAAGAGGAGAACGGCGAGGAAACAGTGTTCTCGTCCACCATTTATCACAGCGAAAAGTTAGCTGTTGCTTTTAGTTTGTTAAACCTGCCAACAGCTACCCCGATTCGGGTTGTCAAGAGCATCACCATGTGTAGGGATTGCCATAATTTTATCCGATTCATTTCATTATTGACAGGCAGGGAAATCGTTATCCGAGATAAAAAGCAGCTTCACAAGTTTTCGAACGGATACTGTTCTTGTAGAGGTTTCGGAGATCTTCTCTAA

Protein sequence

MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLGRVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLNMYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLETLLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSITMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDLL
Homology
[Close]
BLAST of Carg20520 vs. NCBI nr
Match: XP_022951266.1 (putative pentatricopeptide repeat-containing protein At5g52630 [Cucurbita moschata])

HSP 1 Score: 570.9 bits (1470), Expect = 2.5e-159
Identity = 277/286 (96.85%), Postives = 282/286 (98.60%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG
Sbjct: 479 MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 538

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
           RVEEAFDVVKKMNFEPNE+IWSM+IAGCRSHGNSELGFY+AEQLLKLRPKD ETYVSLLN
Sbjct: 539 RVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSELGFYSAEQLLKLRPKDAETYVSLLN 598

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           MY+SAGRWKDVSKVRKLM EEKLGKLKDWSWI+IKEKVYSFKPNDKSHHQT EMYELLET
Sbjct: 599 MYISAGRWKDVSKVRKLMTEEKLGKLKDWSWISIKEKVYSFKPNDKSHHQTTEMYELLET 658

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 240
           LLDEVKPLGYEP QYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI
Sbjct: 659 LLDEVKPLGYEPVQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 718

Query: 241 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDLL 287
           TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDLL
Sbjct: 719 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDLL 764

[Close]
BLAST of Carg20520 vs. NCBI nr
Match: XP_023001917.1 (putative pentatricopeptide repeat-containing protein At5g52630 [Cucurbita maxima])

HSP 1 Score: 554.3 bits (1427), Expect = 2.4e-154
Identity = 271/286 (94.76%), Postives = 275/286 (96.15%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           MRLAGVEPNKITFVGVLSACSHGG VDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG
Sbjct: 479 MRLAGVEPNKITFVGVLSACSHGGSVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 538

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
           RVEEAFDVVKKMNFE NEVIWSMIIAGCRSHGNSELGFYAA+QLLKLRPKDTETYVSLLN
Sbjct: 539 RVEEAFDVVKKMNFEANEVIWSMIIAGCRSHGNSELGFYAADQLLKLRPKDTETYVSLLN 598

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           MY+SAGRWKDVSKVRKLM EEKLGKLKDWSWITIKEKVYSFKP DKSH+QTAEMYELLET
Sbjct: 599 MYISAGRWKDVSKVRKLMTEEKLGKLKDWSWITIKEKVYSFKPKDKSHYQTAEMYELLET 658

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 240
           LLDEVKPLGYEP QY E  EEE GEET FSSTIYHSEKLAVAF LLNLPTATPIRVVKSI
Sbjct: 659 LLDEVKPLGYEPVQYMELTEEEKGEETAFSSTIYHSEKLAVAFGLLNLPTATPIRVVKSI 718

Query: 241 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDLL 287
           TMCRDCHNFIRFISLLTGREIVIRD+KQLHKFSNGYCSCRGFGDLL
Sbjct: 719 TMCRDCHNFIRFISLLTGREIVIRDRKQLHKFSNGYCSCRGFGDLL 764

[Close]
BLAST of Carg20520 vs. NCBI nr
Match: XP_023538360.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 547.7 bits (1410), Expect = 2.3e-152
Identity = 268/286 (93.71%), Postives = 274/286 (95.80%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG
Sbjct: 479 MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 538

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
            VEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGN ELGFYAAEQLLKLRPKDTETYVSLLN
Sbjct: 539 LVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNPELGFYAAEQLLKLRPKDTETYVSLLN 598

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           MY+SAGRWKDVSKVRKLM EEKLGKLKDWSWI+IKEKVYSFKPNDKSH+QTAEMY+LLET
Sbjct: 599 MYISAGRWKDVSKVRKLMTEEKLGKLKDWSWISIKEKVYSFKPNDKSHYQTAEMYKLLET 658

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 240
           LLDEVKPLGYEP QY E  EEE GEET  SS+IYHSEKLAVAF LLNLPTAT IRVVKSI
Sbjct: 659 LLDEVKPLGYEPVQYMELTEEEKGEETALSSSIYHSEKLAVAFGLLNLPTATLIRVVKSI 718

Query: 241 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDLL 287
           TMCRDCHNFIRFISLLTGREIVIRD+KQLHKFSNGYCSCRGFGDLL
Sbjct: 719 TMCRDCHNFIRFISLLTGREIVIRDRKQLHKFSNGYCSCRGFGDLL 764

[Close]
BLAST of Carg20520 vs. NCBI nr
Match: XP_023538358.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo] >XP_023538359.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 544.7 bits (1402), Expect = 1.9e-151
Identity = 262/286 (91.61%), Postives = 275/286 (96.15%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           MRLAGV+PN+ITFVGVLSACSH GLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG
Sbjct: 479 MRLAGVKPNQITFVGVLSACSHAGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 538

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
           RVEEAFDVVKKMNFEPNE+IWSM+IAGCRSHGNSELGFYAAEQLLKLRPKDTETY+SLLN
Sbjct: 539 RVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSELGFYAAEQLLKLRPKDTETYISLLN 598

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           MY+SAGRWKDVS VRK+MKEEKLGKLKDWSWI+IKEKVYSFKPNDKSH QTAEMY+LLET
Sbjct: 599 MYISAGRWKDVSTVRKVMKEEKLGKLKDWSWISIKEKVYSFKPNDKSHCQTAEMYKLLET 658

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 240
           LLDEVKPLGYEP QY E IEEE G+ETVFSSTIYHSEKLA+AF LLNLP AT IRVVK+I
Sbjct: 659 LLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYHSEKLAIAFGLLNLPKATQIRVVKNI 718

Query: 241 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDLL 287
           TMCRDCHNFIRF+SLLTGREIVIRD KQLHKFSNGYCSCRGFGDLL
Sbjct: 719 TMCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNGYCSCRGFGDLL 764

[Close]
BLAST of Carg20520 vs. NCBI nr
Match: XP_023001915.1 (pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita maxima] >XP_023001916.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita maxima])

HSP 1 Score: 536.2 bits (1380), Expect = 6.9e-149
Identity = 259/286 (90.56%), Postives = 273/286 (95.45%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           MRLAGV+PN+ITFVGVLSACSH GLVDEALYYFEVMQKQ +IEPVMDHFACMIDMYMRLG
Sbjct: 479 MRLAGVKPNQITFVGVLSACSHAGLVDEALYYFEVMQKQCRIEPVMDHFACMIDMYMRLG 538

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
           RVEEAFDVVKKMNFEPNE+IWSM+IAGCRSHGNSELGFYAAEQLLKLRPKDTE+Y+SLLN
Sbjct: 539 RVEEAFDVVKKMNFEPNEIIWSMLIAGCRSHGNSELGFYAAEQLLKLRPKDTESYISLLN 598

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           MY+SAGRWKDVS VRKLMKEEK+GKLKDWSWI+IKEKVYSFKPNDKSH QTAEMY+LLET
Sbjct: 599 MYISAGRWKDVSTVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQTAEMYKLLET 658

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 240
           LLDEVKPLGYEP QY E IEEE G+ETVFSSTIYHSEKLAVAF LLNLP AT IRVVK+I
Sbjct: 659 LLDEVKPLGYEPVQYMEVIEEEKGDETVFSSTIYHSEKLAVAFGLLNLPKATQIRVVKNI 718

Query: 241 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDLL 287
           TMCRDCHNFIRF+SLLTGREIVIRD KQLHKFSNGYCSC GFGDLL
Sbjct: 719 TMCRDCHNFIRFVSLLTGREIVIRDSKQLHKFSNGYCSCGGFGDLL 764

[Close]
BLAST of Carg20520 vs. TAIR10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 257.3 bits (656), Expect = 1.1e-68
Identity = 116/282 (41.13%), Postives = 188/282 (66.67%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           M + G+ P+ IT+VGV SAC+H GLV++   YF++M+   KI P + H+ACM+D++ R G
Sbjct: 506 MLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAG 565

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
            ++EA + ++KM  EP+ V W  +++ CR H N +LG  AAE+LL L P+++  Y +L N
Sbjct: 566 LLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALAN 625

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           +Y + G+W++ +K+RK MK+ ++ K + +SWI +K KV+ F   D +H +  E+Y  ++ 
Sbjct: 626 LYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKK 685

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 240
           + DE+K +GY P   T ++  +  EE       +HSEKLA+AF L++ P  T +R++K++
Sbjct: 686 IWDEIKKMGYVPD--TASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNL 745

Query: 241 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGF 283
            +C DCH  I+FIS L GREI++RD  + H F +G+CSCR +
Sbjct: 746 RVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDY 785

[Close]
BLAST of Carg20520 vs. TAIR10
Match: AT3G49170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 245.4 bits (625), Expect = 4.4e-65
Identity = 112/280 (40.00%), Postives = 177/280 (63.21%), Query Frame = 0 

Query: 5   GVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLGRVEE 64
           GV+PN++T+V +LSACSH GLV E   +F  M + +KI+P M+H+ACM+D+  R G + +
Sbjct: 570 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 629

Query: 65  AFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLNMYLS 124
           AF+ +  M F+ + ++W   +  CR H N+ELG  AA ++L+L P +   Y+ L N+Y  
Sbjct: 630 AFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 689

Query: 125 AGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLETLLDE 184
           AG+W++ +++R+ MKE  L K    SWI + +K++ F   D +H    ++Y+ L+ L+ E
Sbjct: 690 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITE 749

Query: 185 VKPLGYEPGQ--YTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSITM 244
           +K  GY P        +EEEN E         HSEK+AVAF L++   + P+RV K++ +
Sbjct: 750 IKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRV 809

Query: 245 CRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGF 283
           C DCHN +++IS ++GREIV+RD  + H F +G CSC  +
Sbjct: 810 CGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDY 849

[Close]
BLAST of Carg20520 vs. TAIR10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 242.3 bits (617), Expect = 3.7e-64
Identity = 116/280 (41.43%), Postives = 180/280 (64.29%), Query Frame = 0 

Query: 5   GVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLGRVEE 64
           G+ P++IT + VL+ACSH GLVD+   YF+ M+  Y+I P  DH+A +ID+  R G+  +
Sbjct: 513 GIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSD 572

Query: 65  AFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLNMYLS 124
           A  V++ + F+P   IW  +++GCR HGN ELG  AA++L  L P+   TY+ L NM+ +
Sbjct: 573 AESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAA 632

Query: 125 AGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLETLLDE 184
            G+W++V++VRKLM++  + K    SWI ++ +V++F  +D SH +   +Y  L+ L  E
Sbjct: 633 TGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKE 692

Query: 185 VKPLGYEPGQ--YTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSITM 244
           ++ LGY P        +E +  +E + ++   HSEK+AVAF L+ LP  T IR+ K++  
Sbjct: 693 MRRLGYVPDTSFVLHDVESDGHKEDMLTT---HSEKIAVAFGLMKLPPGTTIRIFKNLRT 752

Query: 245 CRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGF 283
           C DCHNF RF+S +  R+I++RD+K+ H F NG CSC  F
Sbjct: 753 CGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNF 789

[Close]
BLAST of Carg20520 vs. TAIR10
Match: AT1G16480.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 242.3 bits (617), Expect = 3.7e-64
Identity = 111/280 (39.64%), Postives = 180/280 (64.29%), Query Frame = 0 

Query: 5   GVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLGRVEE 64
           G++P  +TFV +L+ACSHGGLVD+ L Y++++ + + +EP ++H  C+ID+  R GR+ E
Sbjct: 661 GIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAE 720

Query: 65  AFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLNMYLS 124
           A   + KM  +PN+++W  ++A C+ HGN + G  AAE L KL P+D   YV   NM+ +
Sbjct: 721 AETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFAT 780

Query: 125 AGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLETLLDE 184
            GRW+DV  VRK M  + + K +  SW+ +K+KV SF   D++H QT E+Y  LE +   
Sbjct: 781 TGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKL 840

Query: 185 VKPLGY--EPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSITM 244
           +K  GY  +  Q  +  +EE  E  +++    HSE+LA+A++L++ P  + +R+ K++ +
Sbjct: 841 IKESGYVADTSQALQDTDEEQKEHNLWN----HSERLALAYALMSTPEGSTVRIFKNLRI 900

Query: 245 CRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGF 283
           C DCH+  +F+S + GR IV+RD+ + H F  G CSC+ +
Sbjct: 901 CSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDY 936

[Close]
BLAST of Carg20520 vs. TAIR10
Match: AT5G52630.1 (mitochondrial RNAediting factor 1)

HSP 1 Score: 239.6 bits (610), Expect = 2.4e-63
Identity = 115/283 (40.64%), Postives = 184/283 (65.02%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           M+L+G++PN ITF+ VL+ACSH GLVDE  YYF+ M K+ +IEP   H+A ++DM  R G
Sbjct: 309 MKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAG 368

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
           R++EA +V+  M  +P E +W  ++  C  H N+EL  +AA+++ +L P  +  ++SL N
Sbjct: 369 RLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSN 428

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
            Y + GR++D +K RKL+++    K    SW+  + KV++F   ++ H ++ E+YE L  
Sbjct: 429 AYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAE 488

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTI-YHSEKLAVAFSLLNLPTATPIRVVKS 240
           L +E++  GY     +  + E +G+E   + TI YHSE+LA+AF L+  P   PIRV+K+
Sbjct: 489 LGEEMEKAGY-IADTSYVLREVDGDEK--NQTIRYHSERLAIAFGLITFPADRPIRVMKN 548

Query: 241 ITMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGF 283
           + +C DCHN I+F+S+ T R I++RD  + H+F +G CSC  +
Sbjct: 549 LRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDY 587

[Close]
BLAST of Carg20520 vs. Swiss-Prot
Match: sp|Q9SHZ8|PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.0e-67
Identity = 116/282 (41.13%), Postives = 188/282 (66.67%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           M + G+ P+ IT+VGV SAC+H GLV++   YF++M+   KI P + H+ACM+D++ R G
Sbjct: 506 MLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAG 565

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
            ++EA + ++KM  EP+ V W  +++ CR H N +LG  AAE+LL L P+++  Y +L N
Sbjct: 566 LLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALAN 625

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           +Y + G+W++ +K+RK MK+ ++ K + +SWI +K KV+ F   D +H +  E+Y  ++ 
Sbjct: 626 LYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKK 685

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 240
           + DE+K +GY P   T ++  +  EE       +HSEKLA+AF L++ P  T +R++K++
Sbjct: 686 IWDEIKKMGYVPD--TASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNL 745

Query: 241 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGF 283
            +C DCH  I+FIS L GREI++RD  + H F +G+CSCR +
Sbjct: 746 RVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDY 785

[Close]
BLAST of Carg20520 vs. Swiss-Prot
Match: sp|Q5G1T1|PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 7.9e-64
Identity = 112/280 (40.00%), Postives = 177/280 (63.21%), Query Frame = 0 

Query: 5   GVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLGRVEE 64
           GV+PN++T+V +LSACSH GLV E   +F  M + +KI+P M+H+ACM+D+  R G + +
Sbjct: 570 GVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTD 629

Query: 65  AFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLNMYLS 124
           AF+ +  M F+ + ++W   +  CR H N+ELG  AA ++L+L P +   Y+ L N+Y  
Sbjct: 630 AFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYAC 689

Query: 125 AGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLETLLDE 184
           AG+W++ +++R+ MKE  L K    SWI + +K++ F   D +H    ++Y+ L+ L+ E
Sbjct: 690 AGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITE 749

Query: 185 VKPLGYEPGQ--YTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSITM 244
           +K  GY P        +EEEN E         HSEK+AVAF L++   + P+RV K++ +
Sbjct: 750 IKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRV 809

Query: 245 CRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGF 283
           C DCHN +++IS ++GREIV+RD  + H F +G CSC  +
Sbjct: 810 CGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDY 849

[Close]
BLAST of Carg20520 vs. Swiss-Prot
Match: sp|Q9FRI5|PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.7e-63
Identity = 116/280 (41.43%), Postives = 180/280 (64.29%), Query Frame = 0 

Query: 5   GVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLGRVEE 64
           G+ P++IT + VL+ACSH GLVD+   YF+ M+  Y+I P  DH+A +ID+  R G+  +
Sbjct: 513 GIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSD 572

Query: 65  AFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLNMYLS 124
           A  V++ + F+P   IW  +++GCR HGN ELG  AA++L  L P+   TY+ L NM+ +
Sbjct: 573 AESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAA 632

Query: 125 AGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLETLLDE 184
            G+W++V++VRKLM++  + K    SWI ++ +V++F  +D SH +   +Y  L+ L  E
Sbjct: 633 TGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKE 692

Query: 185 VKPLGYEPGQ--YTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSITM 244
           ++ LGY P        +E +  +E + ++   HSEK+AVAF L+ LP  T IR+ K++  
Sbjct: 693 MRRLGYVPDTSFVLHDVESDGHKEDMLTT---HSEKIAVAFGLMKLPPGTTIRIFKNLRT 752

Query: 245 CRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGF 283
           C DCHNF RF+S +  R+I++RD+K+ H F NG CSC  F
Sbjct: 753 CGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNF 789

[Close]
BLAST of Carg20520 vs. Swiss-Prot
Match: sp|Q9LTF4|PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 4.3e-62
Identity = 115/283 (40.64%), Postives = 184/283 (65.02%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           M+L+G++PN ITF+ VL+ACSH GLVDE  YYF+ M K+ +IEP   H+A ++DM  R G
Sbjct: 309 MKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAG 368

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
           R++EA +V+  M  +P E +W  ++  C  H N+EL  +AA+++ +L P  +  ++SL N
Sbjct: 369 RLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSN 428

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
            Y + GR++D +K RKL+++    K    SW+  + KV++F   ++ H ++ E+YE L  
Sbjct: 429 AYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAE 488

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTI-YHSEKLAVAFSLLNLPTATPIRVVKS 240
           L +E++  GY     +  + E +G+E   + TI YHSE+LA+AF L+  P   PIRV+K+
Sbjct: 489 LGEEMEKAGY-IADTSYVLREVDGDEK--NQTIRYHSERLAIAFGLITFPADRPIRVMKN 548

Query: 241 ITMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGF 283
           + +C DCHN I+F+S+ T R I++RD  + H+F +G CSC  +
Sbjct: 549 LRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDY 587

[Close]
BLAST of Carg20520 vs. Swiss-Prot
Match: sp|Q0WSH6|PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana OX=3702 GN=LOI1 PE=1 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 7.4e-62
Identity = 114/281 (40.57%), Postives = 173/281 (61.57%), Query Frame = 0 

Query: 2   RLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLGR 61
           R  G  PN +TFV +LSACS  G V+  +  F+ M+  Y IEP  +H++C++DM  R G 
Sbjct: 405 RGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGM 464

Query: 62  VEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLNM 121
           VE A++ +KKM  +P   +W  +   CR HG  +LG  AAE L KL PKD+  +V L N 
Sbjct: 465 VERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNT 524

Query: 122 YLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLETL 181
           + +AGRW + + VR+ +K   + K   +SWIT+K +V++F+  D+SH    E+   L  L
Sbjct: 525 FAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKL 584

Query: 182 LDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSIT 241
            +E++  GY+P       + E  EE   +   +HSEKLA+AF LL+LP + PIR+ K++ 
Sbjct: 585 RNEMEAAGYKPDLKLSLYDLE--EEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLR 644

Query: 242 MCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGF 283
           +C DCH+F +F+S    REI++RD  + H+F +G CSC+ +
Sbjct: 645 ICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDY 683

[Close]
BLAST of Carg20520 vs. TrEMBL
Match: tr|A0A0A0LRW6|A0A0A0LRW6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372180 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 1.2e-136
Identity = 236/286 (82.52%), Postives = 260/286 (90.91%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           MRL G++PN++TFVGVLSACSH GL DEALYYFE+MQKQY I+PVMDHFAC+IDMY+RLG
Sbjct: 470 MRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLG 529

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
           RVEEAFDVV KMNFEPNE IWSM+IAGCRSHG S+LGFYAAEQLLKL+PKD ETYVSLLN
Sbjct: 530 RVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLN 589

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           M++SAGRWKDVSKVRKLMKEEK+GKLKDWSWI+IKEKVYSFKPNDKSH Q+ EMY+LLET
Sbjct: 590 MHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSLEMYKLLET 649

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 240
           +L+EVK LGYEP +  E IE+E  EE V SST+ HSEKLA+AF LLNLPTATPIRVVKSI
Sbjct: 650 VLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKSI 709

Query: 241 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDLL 287
           TMCRDCHNFIRFISLL GREIVIRD KQLHKF NGYCSC G+GD L
Sbjct: 710 TMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSCGGYGDNL 755

[Close]
BLAST of Carg20520 vs. TrEMBL
Match: tr|A0A1S3BBK8|A0A1S3BBK8_CUCME (putative pentatricopeptide repeat-containing protein At5g52630 OS=Cucumis melo OX=3656 GN=LOC103488145 PE=4 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 1.4e-134
Identity = 231/286 (80.77%), Postives = 258/286 (90.21%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           MRL G++PN++TFVGVLSACSH GL DEALYYFE+MQKQY I+PVMDHFAC+IDMY+RLG
Sbjct: 469 MRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLG 528

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
           RVEEAFDVV+KMNFEPNE IWSM+IAGCRSHG S+LGFYAAEQLLKL+PKD ETYVSLLN
Sbjct: 529 RVEEAFDVVQKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDVETYVSLLN 588

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           M++SAGRWK+VSKVRKLMKEEK+GKLKDWSWI+IKEKVYSFKPNDKSH Q+AEMY LLET
Sbjct: 589 MHVSAGRWKEVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSAEMYNLLET 648

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 240
           + +EVK LGYEP +  E IE+E  E  V S TI+HSEKLA+AF LLNLPTATPIRVVKSI
Sbjct: 649 VFNEVKALGYEPVEDVELIEKEEDEGKVLSPTIHHSEKLAIAFGLLNLPTATPIRVVKSI 708

Query: 241 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDLL 287
           TMCRDCH FIRF+SLL GRE+VIRD KQLHKF NGYCSC G+GD L
Sbjct: 709 TMCRDCHKFIRFVSLLKGREVVIRDSKQLHKFLNGYCSCGGYGDYL 754

[Close]
BLAST of Carg20520 vs. TrEMBL
Match: tr|A0A2P4ILZ5|A0A2P4ILZ5_QUESU (Pentatricopeptide repeat-containing protein, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_49332 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 1.3e-119
Identity = 211/286 (73.78%), Postives = 245/286 (85.66%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           MRLAGV PN+ITFVGVLSACSH G+V EAL YFE+MQK YKI+PVMDHFAC+IDM++RLG
Sbjct: 474 MRLAGVRPNQITFVGVLSACSHAGMVKEALSYFEMMQKVYKIKPVMDHFACLIDMFVRLG 533

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
           ++ EAFD +KK +FEPNE IWS+++AGCRSHGN ELGFYAAEQLLKL+PKDTETYV +LN
Sbjct: 534 QLNEAFDFIKKNDFEPNEFIWSLLMAGCRSHGNLELGFYAAEQLLKLKPKDTETYVLVLN 593

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           MYLSAGRWKDVS+VRK+MKEEKL KL DWSWI+IK KVYSFKPNDKSH  +A++Y+LLE 
Sbjct: 594 MYLSAGRWKDVSRVRKIMKEEKLKKLHDWSWISIKNKVYSFKPNDKSHFHSADIYKLLEN 653

Query: 181 LLDEVKPLGYEPGQYTEAIEEENG-EETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKS 240
           LLD+VK LGYE     E +E  NG EE  +SST YHSEKLA+AF+LLN P A PIR++KS
Sbjct: 654 LLDQVKSLGYES---LETLEVTNGDEEKTYSSTAYHSEKLAIAFALLNTPNAAPIRIIKS 713

Query: 241 ITMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDL 286
           I MCRDCHNF++FISLLT REIVIRD K+LHKF NG+CSC  F  L
Sbjct: 714 IFMCRDCHNFVKFISLLTAREIVIRDSKRLHKFVNGHCSCGEFSCL 756

[Close]
BLAST of Carg20520 vs. TrEMBL
Match: tr|A0A2I4DLF1|A0A2I4DLF1_9ROSI (pentatricopeptide repeat-containing protein At4g14850-like OS=Juglans regia OX=51240 GN=LOC108981298 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 1.3e-116
Identity = 203/285 (71.23%), Postives = 240/285 (84.21%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           MRLAGV PN+ITFVGVLSACS  G+V+EAL YFE+MQK+YKI+PVMDHFAC+IDM++RLG
Sbjct: 485 MRLAGVRPNQITFVGVLSACSQAGMVNEALSYFEMMQKEYKIKPVMDHFACLIDMFVRLG 544

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
           R++EAFD ++KM+FEP E IWS++IAGCRSHGN ELGFYAAEQLLKL+PK+TETYV LLN
Sbjct: 545 RLKEAFDFIEKMDFEPTEFIWSLLIAGCRSHGNLELGFYAAEQLLKLKPKETETYVLLLN 604

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           MY+SAGRWKD S+VRK+MKEEKLGK +DWSWI IKEKVYSFKPNDKSH  +A++Y  LE 
Sbjct: 605 MYISAGRWKDASRVRKMMKEEKLGKFQDWSWINIKEKVYSFKPNDKSHFHSADLYTSLEN 664

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 240
           LL +   LGY+  + T  + +E+ EE   SST YHSEKLAVAF LLN P ATPIRV+KS+
Sbjct: 665 LLQQASSLGYKSLE-TMEVTDEDEEENTSSSTAYHSEKLAVAFGLLNTPNATPIRVIKSV 724

Query: 241 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDL 286
            MCRDCHNF ++ISLLT REI+IRD K+LHKF NG CSC  F  L
Sbjct: 725 FMCRDCHNFAKYISLLTDREIIIRDSKRLHKFVNGRCSCGDFSGL 768

[Close]
BLAST of Carg20520 vs. TrEMBL
Match: tr|W9RX12|W9RX12_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025549 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 3.9e-116
Identity = 198/286 (69.23%), Postives = 243/286 (84.97%), Query Frame = 0 

Query: 1   MRLAGVEPNKITFVGVLSACSHGGLVDEALYYFEVMQKQYKIEPVMDHFACMIDMYMRLG 60
           MRLAGV PN+ITFVG+LSACSH G+VDEAL YFE+MQK+Y+I PVMDH++C+IDM++RLG
Sbjct: 480 MRLAGVRPNQITFVGILSACSHAGMVDEALIYFEMMQKEYRIRPVMDHYSCLIDMFVRLG 539

Query: 61  RVEEAFDVVKKMNFEPNEVIWSMIIAGCRSHGNSELGFYAAEQLLKLRPKDTETYVSLLN 120
           R++EAFD++K M+FEP+E IWS ++AGCRSHGN ELGFYAAEQLLKL+PKD ETYV LLN
Sbjct: 540 RLDEAFDLIKTMDFEPSEFIWSNLVAGCRSHGNLELGFYAAEQLLKLKPKDAETYVLLLN 599

Query: 121 MYLSAGRWKDVSKVRKLMKEEKLGKLKDWSWITIKEKVYSFKPNDKSHHQTAEMYELLET 180
           MYLSAGRWKDVS+VRK+MKEEKLGKLKDWSWI+I++KVYSFKPNDK HHQ A+++  LE+
Sbjct: 600 MYLSAGRWKDVSRVRKMMKEEKLGKLKDWSWISIQDKVYSFKPNDKLHHQNADLHTFLES 659

Query: 181 LLDEVKPLGYEPGQYTEAIEEENGEETVFSSTIYHSEKLAVAFSLLNLPTATPIRVVKSI 240
           L+D+ K  GYE  +  E  +E+  E +  SST YHSEKLA+AF LLN+P++ PIRV+K+ 
Sbjct: 660 LIDQAKGAGYEKLEDLEMTDEDEVESS--SSTTYHSEKLAIAFGLLNMPSSAPIRVIKNF 719

Query: 241 TMCRDCHNFIRFISLLTGREIVIRDKKQLHKFSNGYCSCRGFGDLL 287
            MCRDCHNF++ ISLLT REI IRD K+LHK  NG CSC  FG L+
Sbjct: 720 IMCRDCHNFMKSISLLTAREITIRDSKRLHKIVNGKCSCGDFGILI 763

The following BLAST results are available for this feature:
BLAST of Carg20520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022951266.12.5e-15996.85putative pentatricopeptide repeat-containing protein At5g52630 [Cucurbita moscha... [more]
XP_023001917.12.4e-15494.76putative pentatricopeptide repeat-containing protein At5g52630 [Cucurbita maxima... [more]
XP_023538360.12.3e-15293.71pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp... [more]
XP_023538358.11.9e-15191.61pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp... [more]
XP_023001915.16.9e-14990.56pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita maxima] >X... [more]
BLAST of Carg20520 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G22070.11.1e-6841.13pentatricopeptide (PPR) repeat-containing protein[more]
AT3G49170.14.4e-6540.00Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G25360.13.7e-6441.43Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G16480.13.7e-6439.64Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G52630.12.4e-6340.64mitochondrial RNAediting factor 1[more]
BLAST of Carg20520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SHZ8|PP168_ARATH2.0e-6741.13Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX... [more]
sp|Q5G1T1|PP272_ARATH7.9e-6440.00Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop... [more]
sp|Q9FRI5|PPR57_ARATH6.7e-6341.43Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX... [more]
sp|Q9LTF4|PP429_ARATH4.3e-6240.64Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis th... [more]
sp|Q0WSH6|PP312_ARATH7.4e-6240.57Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg20520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRW6|A0A0A0LRW6_CUCSA1.2e-13682.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372180 PE=4 SV=1[more]
tr|A0A1S3BBK8|A0A1S3BBK8_CUCME1.4e-13480.77putative pentatricopeptide repeat-containing protein At5g52630 OS=Cucumis melo O... [more]
tr|A0A2P4ILZ5|A0A2P4ILZ5_QUESU1.3e-11973.78Pentatricopeptide repeat-containing protein, chloroplastic OS=Quercus suber OX=5... [more]
tr|A0A2I4DLF1|A0A2I4DLF1_9ROSI1.3e-11671.23pentatricopeptide repeat-containing protein At4g14850-like OS=Juglans regia OX=5... [more]
tr|W9RX12|W9RX12_9ROSA3.9e-11669.23Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_025549 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR032867DYW_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20520-RACarg20520-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032867DYW domainPFAMPF14432DYW_deaminasecoord: 148..272
e-value: 7.7E-28
score: 96.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 114..142
e-value: 0.0059
score: 16.7
coord: 12..38
e-value: 0.017
score: 15.3
coord: 51..72
e-value: 6.0E-4
score: 19.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..44
e-value: 2.8E-4
score: 18.8
coord: 49..72
e-value: 1.3E-4
score: 19.9
coord: 114..142
e-value: 9.6E-4
score: 17.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 7.114
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..145
score: 9.087
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..39
score: 7.826
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..207
e-value: 2.0E-28
score: 101.6
NoneNo IPR availablePANTHERPTHR24015:SF779SUBFAMILY NOT NAMEDcoord: 1..201
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..201

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20520Cla022174Watermelon (97103) v1carwmB0648
Carg20520ClCG08G011850Watermelon (Charleston Gray)carwcgB0632
Carg20520CSPI02G21830Wild cucumber (PI 183967)carcpiB0679
Carg20520Cucsa.160830Cucumber (Gy14) v1carcgyB0727
Carg20520CmaCh12G001770Cucurbita maxima (Rimu)carcmaB0920
Carg20520CmoCh12G001410Cucurbita moschata (Rifu)carcmoB0893
Carg20520CsaV3_2G030470Cucumber (Chinese Long) v3carcucB0681
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None