Carg20439 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20439
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger C3HC4-type RING finger family protein
Location	Cucurbita_argyrosperma_scaffold_125 : 428684 .. 429368 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGGCTCGTGTTGCAGCTGAACGTGGTGATTTGGCCGATGCAGTCTCTGTCTTGGAGGACTGTTATAGAGCACTATCAGAAACTATCTCAGGACAAGCTGGTGATCATTTATGCACATCCCTTTGTGCTGAGCTAAAGGAGATGAAGCAAAGAATGGAAGACCAACGCATCTATGATACTTCAGGAAGGGCGTATGTTCTATCAGGACTAAGCTCTCATTCATGGCAGCGAGCCACCACTCGTGGTGATTCGACACGCAGCGGAAGCCTTATGCAATCGTACCAAACGCCATCAATGGTAGACATGTTGACACGGTCTCAAACCATGTTATTAGGGAACCCAACGCCACGGCCCCAAAGAACGCTCCGCCCTACAATGACATTTCCTGCTCGAACTTGTCAACGGTAATCCAACGGTACCATCTGTAACTTCATCCTTCCTGCCATTGTTGTAGACATTTCCTGTTTTTGTGGTATATGGAGTTTTGTTGGGGGGGTATATATTTACCTAGAGGTTTGGCTGGTATACTTCCTTGTTGTAAGCTGTAAATGAATAAGAATTGTGGGTGAAATATGTTAGTATAATTGGCGTTGTAACAACTATGACGAGACAAGCCGTGGTGGACGGGGAGACGCCACGCAAGGTGCAGGAATTACGATTCTTCCTCAGACTAGTCCTA

mRNA sequence

ATGGCGAAGGCTCGTGTTGCAGCTGAACGTGGTGATTTGGCCGATGCAGTCTCTGTCTTGGAGGACTGTTATAGAGCACTATCAGAAACTATCTCAGGACAAGCTGGTGATCATTTATGCACATCCCTTTGTGCTGAGCTAAAGGAGATGAAGCAAAGAATGGAAGACCAACGCATCTATGATACTTCAGGAAGGGCGTATGTTCTATCAGGACTAAGCTCTCATTCATGGCAGCGAGCCACCACTCGTGGTGATTCGACACGCAGCGGAAGCCTTATGCAATCGTACCAAACGCCATCAATGGTAGACATGTTGACACGGTCTCAAACCATGTTATTAGGGAACCCAACGCCACGGCCCCAAAGAACGCTCCGCCCTACAATGACATTTCCTGCTCGAACTTGTCAACGTATAATTGGCGTTGTAACAACTATGACGAGACAAGCCGTGGTGGACGGGGAGACGCCACGCAAGGTGCAGGAATTACGATTCTTCCTCAGACTAGTCCTA

Coding sequence (CDS)

ATGGCGAAGGCTCGTGTTGCAGCTGAACGTGGTGATTTGGCCGATGCAGTCTCTGTCTTGGAGGACTGTTATAGAGCACTATCAGAAACTATCTCAGGACAAGCTGGTGATCATTTATGCACATCCCTTTGTGCTGAGCTAAAGGAGATGAAGCAAAGAATGGAAGACCAACGCATCTATGATACTTCAGGAAGGGCGTATGTTCTATCAGGACTAAGCTCTCATTCATGGCAGCGAGCCACCACTCGTGGTGATTCGACACGCAGCGGAAGCCTTATGCAATCGTACCAAACGCCATCAATGGTAGACATGTTGACACGGTCTCAAACCATGTTATTAGGGAACCCAACGCCACGGCCCCAAAGAACGCTCCGCCCTACAATGACATTTCCTGCTCGAACTTGTCAACGTATAATTGGCGTTGTAACAACTATGACGAGACAAGCCGTGGTGGACGGGGAGACGCCACGCAAGGTGCAGGAATTACGATTCTTCCTCAGACTAGTCCTA

Protein sequence

MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIYDTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRPQRTLRPTMTFPARTCQRIIGVVTTMTRQAVVDGETPRKVQELRFFLRLVL

Homology

[Close]

BLAST of Carg20439 vs. NCBI nr
Match: XP_022949445.1 (uncharacterized protein LOC111452787 [Cucurbita moschata])

HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY
Sbjct: 574 MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 633

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 120
           DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP
Sbjct: 634 DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 693

Query: 121 QRTLRPTMTFPARTCQR 138
           QRTLRPTMTFPARTCQR
Sbjct: 694 QRTLRPTMTFPARTCQR 710

[Close]

BLAST of Carg20439 vs. NCBI nr
Match: XP_023524826.1 (uncharacterized protein LOC111788639 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 135/137 (98.54%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMK+RMEDQRIY
Sbjct: 575 MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKERMEDQRIY 634

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 120
           DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP
Sbjct: 635 DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 694

Query: 121 QRTLRPTMTFPARTCQR 138
           QRTLRPTMTFPART QR
Sbjct: 695 QRTLRPTMTFPARTRQR 711

[Close]

BLAST of Carg20439 vs. NCBI nr
Match: XP_022998856.1 (uncharacterized protein LOC111493389 [Cucurbita maxima])

HSP 1 Score: 256.1 bits (653), Expect = 8.1e-65
Identity = 133/137 (97.08%), Postives = 134/137 (97.81%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           MAKAR AAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSL AELKEMK+RMEDQRIY
Sbjct: 574 MAKARAAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLRAELKEMKERMEDQRIY 633

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 120
           DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP
Sbjct: 634 DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 693

Query: 121 QRTLRPTMTFPARTCQR 138
           QRTLRPTMTFPART QR
Sbjct: 694 QRTLRPTMTFPARTRQR 710

[Close]

BLAST of Carg20439 vs. NCBI nr
Match: XP_004139556.1 (PREDICTED: uncharacterized protein LOC101222940 [Cucumis sativus] >KGN64836.1 hypothetical protein Csa_1G124000 [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 1.6e-60
Identity = 123/137 (89.78%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           MAKARVAAERGDLA+AVSVLE+CYRALSETISGQAGDHLCT+LCAELKEMK+RME+QRIY
Sbjct: 586 MAKARVAAERGDLANAVSVLENCYRALSETISGQAGDHLCTALCAELKEMKERMENQRIY 645

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 120
           + SGRAYVLSGLSSHSWQRAT RGDSTR+GSL+Q+YQTPSMVDMLTRSQTML GNPTPRP
Sbjct: 646 EASGRAYVLSGLSSHSWQRATARGDSTRNGSLVQAYQTPSMVDMLTRSQTMLPGNPTPRP 705

Query: 121 QRTLRPTMTFPARTCQR 138
           QRTLRPTMTFPAR+ QR
Sbjct: 706 QRTLRPTMTFPARSRQR 722

[Close]

BLAST of Carg20439 vs. NCBI nr
Match: XP_008462750.1 (PREDICTED: uncharacterized protein LOC103501034 isoform X1 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 1.6e-60
Identity = 123/137 (89.78%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           MAKARVAAERGDLA+AVSVLE+CYRALSETISGQAGDHLCT+LCAELKEMK+RME+QRIY
Sbjct: 587 MAKARVAAERGDLANAVSVLENCYRALSETISGQAGDHLCTALCAELKEMKERMENQRIY 646

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 120
           + SGRAYVLSGLSSHSWQRAT RGDSTR+GSL+Q+YQTPSMVDMLTRSQTML GNPTPRP
Sbjct: 647 EASGRAYVLSGLSSHSWQRATARGDSTRNGSLVQAYQTPSMVDMLTRSQTMLPGNPTPRP 706

Query: 121 QRTLRPTMTFPARTCQR 138
           QRTLRPTMTFPAR+ QR
Sbjct: 707 QRTLRPTMTFPARSRQR 723

[Close]

BLAST of Carg20439 vs. TAIR10
Match: AT5G60710.1 (Zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 151.0 bits (380), Expect = 6.7e-37
Identity = 82/139 (58.99%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           +++ARV AERGDL +AVSVLE C   L+E++SG+AGD LC +LCAELKEM++RM  +++Y
Sbjct: 564 ISEARVLAERGDLTEAVSVLETCRGLLTESVSGRAGDQLCVTLCAELKEMQERMASRQVY 623

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLG------ 120
           + SGRAYVL+GLSSHSWQRAT RGD   S S   SYQT SMVDM+  SQTM  G      
Sbjct: 624 EASGRAYVLAGLSSHSWQRATARGD--MSDSTTTSYQTQSMVDMVNLSQTMTFGMPIASS 683

Query: 121 NPTPRPQRTLRPTMTFPAR 134
           N +P  QR LR  ++FPA+
Sbjct: 684 NSSPSGQRKLRQALSFPAK 700

[Close]

BLAST of Carg20439 vs. TAIR10
Match: AT3G54780.1 (Zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-29
Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           MA+AR  AE GDL  AV  +E+    L+ET++ ++ D  C +L +ELKEM+ RM    +Y
Sbjct: 541 MAQARTLAEHGDLEAAVKAIENFRLVLAETVAAKSCDRFCVALDSELKEMQGRMRSSHMY 600

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 120
           + SGRAY+LSGLSSHSWQRAT RG+S  S S +Q+YQTPSM +ML RSQ M L +P+   
Sbjct: 601 EASGRAYILSGLSSHSWQRATARGNSRDSSSFVQAYQTPSMAEMLRRSQAMFLVSPS--H 660

Query: 121 QRTLRPTMTFPAR 134
            R ++P ++F ++
Sbjct: 661 HRLIQPLLSFASQ 671

[Close]

BLAST of Carg20439 vs. TAIR10
Match: AT2G38970.1 (Zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-27
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           M KAR  AER DLA  V+ +++   AL+ET+S ++GD  C +L  ELKEM++RM  + +Y
Sbjct: 563 MVKARALAEREDLAAGVTAIQNFRVALAETVSAKSGDGFCVALDRELKEMQERMASRHVY 622

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQS-YQTPSMVDMLTRSQ 110
           + SGRAY+LSGLSSHSWQRAT+RG+S    S +Q+ YQTPSMV+ML RSQ
Sbjct: 623 EVSGRAYILSGLSSHSWQRATSRGESGDGSSFVQAYYQTPSMVEMLHRSQ 672

[Close]

BLAST of Carg20439 vs. TAIR10
Match: AT1G08050.1 (Zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-26
Identity = 66/123 (53.66%), Postives = 87/123 (70.73%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           M++ARV A+ GDL+ AV +L +  R LSET S Q+ D LC SL +EL  +++RM  +R+Y
Sbjct: 515 MSEARVLADGGDLSGAVGILRNRERELSETPSAQSSDRLCQSLSSELSALQERMTSRRMY 574

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPT-PR 120
            TSGRAY  S +SSHS QRAT RGDST+  S +Q+YQT  M  M+TRSQ ++L +PT P 
Sbjct: 575 RTSGRAYAFSSMSSHSAQRATARGDSTQGFSPVQAYQTSPMARMVTRSQLLVLESPTKPS 634

Query: 121 PQR 123
           P R
Sbjct: 635 PGR 637

[Close]

BLAST of Carg20439 vs. TrEMBL
Match: tr|A0A1S4E4I6|A0A1S4E4I6_CUCME (uncharacterized protein LOC103501034 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501034 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.1e-60
Identity = 123/137 (89.78%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           MAKARVAAERGDLA+AVSVLE+CYRALSETISGQAGDHLCT+LCAELKEMK+RME+QRIY
Sbjct: 553 MAKARVAAERGDLANAVSVLENCYRALSETISGQAGDHLCTALCAELKEMKERMENQRIY 612

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 120
           + SGRAYVLSGLSSHSWQRAT RGDSTR+GSL+Q+YQTPSMVDMLTRSQTML GNPTPRP
Sbjct: 613 EASGRAYVLSGLSSHSWQRATARGDSTRNGSLVQAYQTPSMVDMLTRSQTMLPGNPTPRP 672

Query: 121 QRTLRPTMTFPARTCQR 138
           QRTLRPTMTFPAR+ QR
Sbjct: 673 QRTLRPTMTFPARSRQR 689

[Close]

BLAST of Carg20439 vs. TrEMBL
Match: tr|A0A1S3CHN5|A0A1S3CHN5_CUCME (uncharacterized protein LOC103501034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501034 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.1e-60
Identity = 123/137 (89.78%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           MAKARVAAERGDLA+AVSVLE+CYRALSETISGQAGDHLCT+LCAELKEMK+RME+QRIY
Sbjct: 587 MAKARVAAERGDLANAVSVLENCYRALSETISGQAGDHLCTALCAELKEMKERMENQRIY 646

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 120
           + SGRAYVLSGLSSHSWQRAT RGDSTR+GSL+Q+YQTPSMVDMLTRSQTML GNPTPRP
Sbjct: 647 EASGRAYVLSGLSSHSWQRATARGDSTRNGSLVQAYQTPSMVDMLTRSQTMLPGNPTPRP 706

Query: 121 QRTLRPTMTFPARTCQR 138
           QRTLRPTMTFPAR+ QR
Sbjct: 707 QRTLRPTMTFPARSRQR 723

[Close]

BLAST of Carg20439 vs. TrEMBL
Match: tr|A0A0A0LXX5|A0A0A0LXX5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G124000 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.1e-60
Identity = 123/137 (89.78%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           MAKARVAAERGDLA+AVSVLE+CYRALSETISGQAGDHLCT+LCAELKEMK+RME+QRIY
Sbjct: 586 MAKARVAAERGDLANAVSVLENCYRALSETISGQAGDHLCTALCAELKEMKERMENQRIY 645

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 120
           + SGRAYVLSGLSSHSWQRAT RGDSTR+GSL+Q+YQTPSMVDMLTRSQTML GNPTPRP
Sbjct: 646 EASGRAYVLSGLSSHSWQRATARGDSTRNGSLVQAYQTPSMVDMLTRSQTMLPGNPTPRP 705

Query: 121 QRTLRPTMTFPARTCQR 138
           QRTLRPTMTFPAR+ QR
Sbjct: 706 QRTLRPTMTFPARSRQR 722

[Close]

BLAST of Carg20439 vs. TrEMBL
Match: tr|A0A2P4H9K9|A0A2P4H9K9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_51559 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 97/137 (70.80%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           MA+ARV+AERGDLA AVS LE C+R LSET S +AGD LC +LCAELKEM++RM ++++Y
Sbjct: 552 MAEARVSAERGDLAGAVSALESCHRVLSETPSARAGDRLCVALCAELKEMQERMANRQVY 611

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 120
           + SGRAYVLSGLSSHSWQRAT RGDST S SL+Q+YQTPSMVDM+TRSQTM+ GNP   P
Sbjct: 612 EASGRAYVLSGLSSHSWQRATARGDSTDSTSLVQAYQTPSMVDMVTRSQTMIFGNPA--P 671

Query: 121 QRTLRPTMTFPARTCQR 138
           QR+LRP  +FPAR+  R
Sbjct: 672 QRSLRPAQSFPARSRPR 686

[Close]

BLAST of Carg20439 vs. TrEMBL
Match: tr|A0A2P5FTU4|A0A2P5FTU4_9ROSA (Cdk-activating kinase assembly factor OS=Trema orientalis OX=63057 GN=TorRG33x02_029680 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.1e-44
Identity = 98/137 (71.53%), Postives = 113/137 (82.48%), Query Frame = 0


Query: 1   MAKARVAAERGDLADAVSVLEDCYRALSETISGQAGDHLCTSLCAELKEMKQRMEDQRIY 60
           MA+AR AAE GDLA AVSVLE C RALSET S Q GD LCT+LCAELKEM++RM ++R+Y
Sbjct: 590 MAEARAAAENGDLAGAVSVLESCCRALSETASSQTGDRLCTALCAELKEMQERMANRRVY 649

Query: 61  DTSGRAYVLSGLSSHSWQRATTRGDSTRSGSLMQSYQTPSMVDMLTRSQTMLLGNPTPRP 120
           + SGRAYVLSGLSSHSWQRAT RGDST S SL+QSYQTPSMVDM+ RSQTM+ GNP   P
Sbjct: 650 EESGRAYVLSGLSSHSWQRATARGDSTDSTSLVQSYQTPSMVDMVNRSQTMVFGNP---P 709

Query: 121 QRTLRPTMTFPARTCQR 138
           QR+L+P  +FP R+  R
Sbjct: 710 QRSLQPAQSFPGRSRPR 723

The following BLAST results are available for this feature:

BLAST of Carg20439 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949445.1	2.1e-68	100.00	uncharacterized protein LOC111452787 [Cucurbita moschata]	[more]
XP_023524826.1	1.1e-66	98.54	uncharacterized protein LOC111788639 [Cucurbita pepo subsp. pepo]	[more]
XP_022998856.1	8.1e-65	97.08	uncharacterized protein LOC111493389 [Cucurbita maxima]	[more]
XP_004139556.1	1.6e-60	89.78	PREDICTED: uncharacterized protein LOC101222940 [Cucumis sativus] >KGN64836.1 hy...	[more]
XP_008462750.1	1.6e-60	89.78	PREDICTED: uncharacterized protein LOC103501034 isoform X1 [Cucumis melo]	[more]

BLAST of Carg20439 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60710.1	6.7e-37	58.99	Zinc finger (C3HC4-type RING finger) family protein	[more]
AT3G54780.1	1.8e-29	50.38	Zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G38970.1	1.3e-27	57.27	Zinc finger (C3HC4-type RING finger) family protein	[more]
AT1G08050.1	1.1e-26	53.66	Zinc finger (C3HC4-type RING finger) family protein	[more]

BLAST of Carg20439 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20439 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E4I6\|A0A1S4E4I6_CUCME	1.1e-60	89.78	uncharacterized protein LOC103501034 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CHN5\|A0A1S3CHN5_CUCME	1.1e-60	89.78	uncharacterized protein LOC103501034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LXX5\|A0A0A0LXX5_CUCSA	1.1e-60	89.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G124000 PE=4 SV=1	[more]
tr\|A0A2P4H9K9\|A0A2P4H9K9_QUESU	1.4e-44	70.80	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_51559 PE=4 SV=1	[more]
tr\|A0A2P5FTU4\|A0A2P5FTU4_9ROSA	3.1e-44	71.53	Cdk-activating kinase assembly factor OS=Trema orientalis OX=63057 GN=TorRG33x02...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032838	Vwaint_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20439-RA	Carg20439-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032838	VWA-Hint protein, Vwaint domain	PFAM	PF14624	Vwaint	coord: 37..109 e-value: 2.7E-23 score: 81.8
None	No IPR available	PANTHER	PTHR10579	CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR	coord: 1..137
None	No IPR available	PANTHER	PTHR10579:SF97	C3H4 TYPE ZINC FINGER PROTEIN-RELATED	coord: 1..137

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20439	Cucurbita maxima (Rimu)	carcmaB0982
Carg20439	Cucurbita moschata (Rifu)	carcmoB0954
Carg20439	Cucurbita pepo (Zucchini)	carcpeB0982