Carg20437 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20437
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box protein PP2-B10-like
Location	Cucurbita_argyrosperma_scaffold_125 : 408492 .. 408965 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATCACCAGGCACATTATATGCAGCCTATATGGTATTCAAGCTAACATCCTCGGACGGCTTCCAACGCCAGCCCGTCGAGGTTGGAGTCGGCCTTGTCGGGTCCGAAGCAACCAAGCAAACAGTTTATTTAGACAACGTAGATAGTGAATGGCGACAGCGCCACCCAATTGTGTCGAGGGGGATCGGCCTTTTCAACCTTAACAGACGACGCGTCACAATCGGCACACAGGTAGCTATGCCCCCCCATGAAACCACCAGGAACAATGCCCCAGCCGAGGACTGCAGTCACCGCGTCGTCCCGAAGGAGAGGGAGGACGGGTGGCTGGAGGTTCAGCTTGGTGTGTTCTTCCATGATGGGGGGGTCAATGGGGAGCTGGAGATGAGCGTGTTGGAGGTCAAGGGTGGGCATTGGAAGAGCGGTTTGCTTATACAGGGAATTGAAATCAGGCCAAAAGACTTGAAGACCTAA

mRNA sequence

ATGCTATCACCAGGCACATTATATGCAGCCTATATGGTATTCAAGCTAACATCCTCGGACGGCTTCCAACGCCAGCCCGTCGAGGTTGGAGTCGGCCTTGTCGGGTCCGAAGCAACCAAGCAAACAGTTTATTTAGACAACGTAGATAGTGAATGGCGACAGCGCCACCCAATTGTGTCGAGGGGGATCGGCCTTTTCAACCTTAACAGACGACGCGTCACAATCGGCACACAGGTAGCTATGCCCCCCCATGAAACCACCAGGAACAATGCCCCAGCCGAGGACTGCAGTCACCGCGTCGTCCCGAAGGAGAGGGAGGACGGGTGGCTGGAGGTTCAGCTTGGTGTGTTCTTCCATGATGGGGGGGTCAATGGGGAGCTGGAGATGAGCGTGTTGGAGGTCAAGGGTGGGCATTGGAAGAGCGGTTTGCTTATACAGGGAATTGAAATCAGGCCAAAAGACTTGAAGACCTAA

Coding sequence (CDS)

ATGCTATCACCAGGCACATTATATGCAGCCTATATGGTATTCAAGCTAACATCCTCGGACGGCTTCCAACGCCAGCCCGTCGAGGTTGGAGTCGGCCTTGTCGGGTCCGAAGCAACCAAGCAAACAGTTTATTTAGACAACGTAGATAGTGAATGGCGACAGCGCCACCCAATTGTGTCGAGGGGGATCGGCCTTTTCAACCTTAACAGACGACGCGTCACAATCGGCACACAGGTAGCTATGCCCCCCCATGAAACCACCAGGAACAATGCCCCAGCCGAGGACTGCAGTCACCGCGTCGTCCCGAAGGAGAGGGAGGACGGGTGGCTGGAGGTTCAGCTTGGTGTGTTCTTCCATGATGGGGGGGTCAATGGGGAGCTGGAGATGAGCGTGTTGGAGGTCAAGGGTGGGCATTGGAAGAGCGGTTTGCTTATACAGGGAATTGAAATCAGGCCAAAAGACTTGAAGACCTAA

Protein sequence

MLSPGTLYAAYMVFKLTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIVSRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFHDGGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT

Homology

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BLAST of Carg20437 vs. NCBI nr
Match: XP_022949540.1 (F-box protein PP2-B10-like [Cucurbita moschata])

HSP 1 Score: 323.9 bits (829), Expect = 2.9e-85
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFKLTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIVS 60
           MLSPGTLYAAYMVFKLTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIVS
Sbjct: 177 MLSPGTLYAAYMVFKLTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIVS 236

Query: 61  RGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFHD 120
           RGIGLFNLNRR VTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFHD
Sbjct: 237 RGIGLFNLNRRCVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFHD 296

Query: 121 GGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT 158
           GGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT
Sbjct: 297 GGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT 333

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BLAST of Carg20437 vs. NCBI nr
Match: XP_023521720.1 (F-box protein PP2-B10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.7 bits (779), Expect = 1.8e-79
Identity = 147/157 (93.63%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFKLTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIVS 60
           MLSPGTLYAAYMVF+L +++GFQRQPV+VGVGLVGSEAT+QTVYL+NVDSEWRQRHPIVS
Sbjct: 177 MLSPGTLYAAYMVFRLLTTNGFQRQPVKVGVGLVGSEATEQTVYLENVDSEWRQRHPIVS 236

Query: 61  RGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFHD 120
           RGIGLFNLNRRRVTIGTQVAM P+ETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFHD
Sbjct: 237 RGIGLFNLNRRRVTIGTQVAM-PNETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFHD 296

Query: 121 GGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT 158
           GGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT
Sbjct: 297 GGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT 332

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BLAST of Carg20437 vs. NCBI nr
Match: XP_022998814.1 (F-box protein PP2-B10-like [Cucurbita maxima])

HSP 1 Score: 302.4 bits (773), Expect = 9.1e-79
Identity = 146/157 (92.99%), Postives = 151/157 (96.18%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFKLTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIVS 60
           MLSPGTLYAAYMVFKLT+S+GFQRQPV+VGVGLVGSE TKQT YL+NVDSEWRQRHPIVS
Sbjct: 188 MLSPGTLYAAYMVFKLTTSNGFQRQPVKVGVGLVGSEVTKQTAYLENVDSEWRQRHPIVS 247

Query: 61  RGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFHD 120
           RGIGLFNLNRRRVTI TQVAM PHETTRNNAPAEDCSHR+VPKEREDGWLEVQLGVFFHD
Sbjct: 248 RGIGLFNLNRRRVTISTQVAM-PHETTRNNAPAEDCSHRIVPKEREDGWLEVQLGVFFHD 307

Query: 121 GGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT 158
           G VNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDL T
Sbjct: 308 GRVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLTT 343

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BLAST of Carg20437 vs. NCBI nr
Match: XP_004138901.1 (PREDICTED: F-box protein PP2-B10 [Cucumis sativus] >KGN61350.1 hypothetical protein Csa_2G094900 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 1.5e-57
Identity = 119/158 (75.32%), Postives = 130/158 (82.28%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFK-LTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIV 60
           MLSPGTLY+A++VFK  TSS GFQ+QPVEVGVGL G+E  K+TVYLD+V  +WRQRHPIV
Sbjct: 168 MLSPGTLYSAHLVFKPTTSSYGFQQQPVEVGVGLTGTEPVKRTVYLDDVSRDWRQRHPIV 227

Query: 61  SRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFH 120
            RG GLFNL  RR  IGTQV  PP E TRN+APA DC  R +PKERED WLEVQLG FFH
Sbjct: 228 HRGFGLFNLGGRRSMIGTQVGTPP-EITRNDAPAVDCG-RHIPKEREDRWLEVQLGEFFH 287

Query: 121 DGGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT 158
           DG  NGELE+SVLEVKGGHWK GLLIQGIEIRPK LKT
Sbjct: 288 DGD-NGELEISVLEVKGGHWKGGLLIQGIEIRPKGLKT 322

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BLAST of Carg20437 vs. NCBI nr
Match: XP_008441744.1 (PREDICTED: F-box protein PP2-B10-like [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 2.2e-56
Identity = 118/158 (74.68%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFK-LTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIV 60
           MLSPGTLYAAY+VFK  TSS GFQ+QPVEV VGL G+E  K+TVYLD+V+ +WRQRHPIV
Sbjct: 168 MLSPGTLYAAYLVFKPTTSSYGFQQQPVEVAVGLAGNETLKRTVYLDDVNRDWRQRHPIV 227

Query: 61  SRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFH 120
            RG GL NL RR + IGTQVA+ P E TRN+APA DC H  +PKERED WLEVQLG FFH
Sbjct: 228 HRGFGLLNLGRRGI-IGTQVAI-PREITRNDAPAVDCGHH-IPKEREDRWLEVQLGEFFH 287

Query: 121 DGGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT 158
           D GV+GELE+SV EVKGGHWK GLLIQGIEIRPK LKT
Sbjct: 288 D-GVSGELEISVSEVKGGHWKGGLLIQGIEIRPKGLKT 321

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BLAST of Carg20437 vs. TAIR10
Match: AT2G02230.1 (phloem protein 2-B1)

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-22
Identity = 66/162 (40.74%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFKLTS--SDGFQRQPVEVGVGLVGSEATKQTVYLD--NVDSEWRQRH 60
           MLS GT Y+ Y+VFK  +  S GF   PVE GVG VG  ATK++VY +  N DS     H
Sbjct: 175 MLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGVGFVGKVATKKSVYFESGNADSRSATSH 234

Query: 61  PIVSRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGV 120
                GI    ++R        + +                + V PKER DGW EV+LG 
Sbjct: 235 ---YSGISYAMVSRAFRMRRPWMQVQRXXXXXXXXXXXXGMNVVGPKERVDGWSEVELGK 294

Query: 121 FFHDGGVNG-----ELEMSVLEVKGGHWKSGLLIQGIEIRPK 154
           F+ + G  G     E+E+S++E + G+WKSGL+IQGIEIRP+
Sbjct: 295 FYINNGGCGDDGSDEIEISIMETQNGNWKSGLIIQGIEIRPE 333

[Close]

BLAST of Carg20437 vs. TAIR10
Match: AT2G02240.1 (F-box family protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-19
Identity = 59/153 (38.56%), Postives = 80/153 (52.29%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFKLTS-SDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIV 60
           +LSPGT Y+AY+VFK      G    PVEVG+GLVG E++K+ +Y               
Sbjct: 204 VLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLVGQESSKRFIYF-------------- 263

Query: 61  SRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFH 120
              IG  +   RR T          + T+             P +REDGW+E +LG FF+
Sbjct: 264 ---IGPRDRRGRRET---------RDVTK-------------PDQREDGWMEAELGEFFN 316

Query: 121 DGGVNGELEMSVLEVKGGHWKSGLLIQGIEIRP 153
           +   + E+E SV+E+K   WKSGL+IQGIE RP
Sbjct: 324 EERCD-EIEFSVIEIKSPSWKSGLIIQGIEFRP 316

[Close]

BLAST of Carg20437 vs. TAIR10
Match: AT2G02360.1 (phloem protein 2-B10)

HSP 1 Score: 90.5 bits (223), Expect = 9.9e-19
Identity = 59/155 (38.06%), Postives = 79/155 (50.97%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFK-LTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIV 60
           +LSP T Y+AY+VFK +    GFQ   +E  VG+VG E +++ +               +
Sbjct: 157 VLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVVGQEPSRRLICFSEA----------I 216

Query: 61  SRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFH 120
            RG       RR V                          V PK+REDGW+E++LG FF+
Sbjct: 217 RRG-------RRNV--------------------------VKPKQREDGWMEIELGEFFN 268

Query: 121 DGGV--NGELEMSVLEVKGGHWKSGLLIQGIEIRP 153
           DGG+  N E+EMS LE K  + K GL+IQGIEIRP
Sbjct: 277 DGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIRP 268

[Close]

BLAST of Carg20437 vs. TAIR10
Match: AT2G02340.1 (phloem protein 2-B8)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-18
Identity = 57/163 (34.97%), Postives = 87/163 (53.37%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVF-KLTSSDGFQRQPVEVGVGLVG---SEATKQTVYLD-NVDSEWRQR 60
           ++SP T Y+AY+V+ KL    GF+   VEV VG+VG    E+ ++ +  D  +D ++R+R
Sbjct: 181 VISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVGQDLEESCRRYICFDETMDEQFRRR 240

Query: 61  HPIVSRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLG 120
                RG  L                                  V P+ R+DGW+E+++G
Sbjct: 241 ----DRGKNL----------------------------------VKPERRKDGWMEIKIG 300

Query: 121 VFFHDGGV--NGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLK 157
            FF++GG+  + E+EM  LE K  HWK GL+IQGIEIRP +++
Sbjct: 301 EFFNEGGLLNDDEIEMVALEAKQRHWKRGLIIQGIEIRPTNIR 305

[Close]

BLAST of Carg20437 vs. TAIR10
Match: AT1G09155.1 (phloem protein 2-B15)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-16
Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 2   LSPGTLYAAYMVFKLTS-SDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIVS 61
           LSP T Y AY++ K+TS + G    P E  + +   E   ++ YL  +D++ +Q      
Sbjct: 147 LSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKVGNGEKKIKSTYLSCLDNKKQQ------ 206

Query: 62  RGIGLFNLNRRRVTIG-TQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVF-- 121
                      RV  G  +  M  HE  R        SHR  P+ R+DGW+E++LG F  
Sbjct: 207 ---------MERVFYGQREQRMATHEVVR--------SHRREPEVRDDGWMEIELGEFET 266

Query: 122 -FHDGGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLK 157
              +G  + E+ MS+ EVKG   K G+ I GIE+RPK LK
Sbjct: 267 GSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPKPLK 283

[Close]

BLAST of Carg20437 vs. Swiss-Prot
Match: sp|Q6NPT8|PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana OX=3702 GN=PP2B1 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.5e-21
Identity = 66/162 (40.74%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFKLTS--SDGFQRQPVEVGVGLVGSEATKQTVYLD--NVDSEWRQRH 60
           MLS GT Y+ Y+VFK  +  S GF   PVE GVG VG  ATK++VY +  N DS     H
Sbjct: 175 MLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGVGFVGKVATKKSVYFESGNADSRSATSH 234

Query: 61  PIVSRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGV 120
                GI    ++R        + +                + V PKER DGW EV+LG 
Sbjct: 235 ---YSGISYAMVSRAFRMRRPWMQVQRXXXXXXXXXXXXGMNVVGPKERVDGWSEVELGK 294

Query: 121 FFHDGGVNG-----ELEMSVLEVKGGHWKSGLLIQGIEIRPK 154
           F+ + G  G     E+E+S++E + G+WKSGL+IQGIEIRP+
Sbjct: 295 FYINNGGCGDDGSDEIEISIMETQNGNWKSGLIIQGIEIRPE 333

[Close]

BLAST of Carg20437 vs. Swiss-Prot
Match: sp|Q3E6P4|FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana OX=3702 GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.7e-18
Identity = 59/153 (38.56%), Postives = 80/153 (52.29%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFKLTS-SDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIV 60
           +LSPGT Y+AY+VFK      G    PVEVG+GLVG E++K+ +Y               
Sbjct: 204 VLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGLVGQESSKRFIYF-------------- 263

Query: 61  SRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFH 120
              IG  +   RR T          + T+             P +REDGW+E +LG FF+
Sbjct: 264 ---IGPRDRRGRRET---------RDVTK-------------PDQREDGWMEAELGEFFN 316

Query: 121 DGGVNGELEMSVLEVKGGHWKSGLLIQGIEIRP 153
           +   + E+E SV+E+K   WKSGL+IQGIE RP
Sbjct: 324 EERCD-EIEFSVIEIKSPSWKSGLIIQGIEFRP 316

[Close]

BLAST of Carg20437 vs. Swiss-Prot
Match: sp|Q9ZVQ6|P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3702 GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-17
Identity = 59/155 (38.06%), Postives = 79/155 (50.97%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFK-LTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIV 60
           +LSP T Y+AY+VFK +    GFQ   +E  VG+VG E +++ +               +
Sbjct: 157 VLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVGVVGQEPSRRLICFSEA----------I 216

Query: 61  SRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFH 120
            RG       RR V                          V PK+REDGW+E++LG FF+
Sbjct: 217 RRG-------RRNV--------------------------VKPKQREDGWMEIELGEFFN 268

Query: 121 DGGV--NGELEMSVLEVKGGHWKSGLLIQGIEIRP 153
           DGG+  N E+EMS LE K  + K GL+IQGIEIRP
Sbjct: 277 DGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIRP 268

[Close]

BLAST of Carg20437 vs. Swiss-Prot
Match: sp|Q9ZVQ8|PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana OX=3702 GN=PP2B8 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-17
Identity = 57/163 (34.97%), Postives = 87/163 (53.37%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVF-KLTSSDGFQRQPVEVGVGLVG---SEATKQTVYLD-NVDSEWRQR 60
           ++SP T Y+AY+V+ KL    GF+   VEV VG+VG    E+ ++ +  D  +D ++R+R
Sbjct: 181 VISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVGQDLEESCRRYICFDETMDEQFRRR 240

Query: 61  HPIVSRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLG 120
                RG  L                                  V P+ R+DGW+E+++G
Sbjct: 241 ----DRGKNL----------------------------------VKPERRKDGWMEIKIG 300

Query: 121 VFFHDGGV--NGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLK 157
            FF++GG+  + E+EM  LE K  HWK GL+IQGIEIRP +++
Sbjct: 301 EFFNEGGLLNDDEIEMVALEAKQRHWKRGLIIQGIEIRPTNIR 305

[Close]

BLAST of Carg20437 vs. Swiss-Prot
Match: sp|O80494|P2B15_ARATH (F-box protein PP2-B15 OS=Arabidopsis thaliana OX=3702 GN=PP2B15 PE=2 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 3.7e-15
Identity = 56/160 (35.00%), Postives = 80/160 (50.00%), Query Frame = 0


Query: 2   LSPGTLYAAYMVFKLTS-SDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIVS 61
           LSP T Y AY++ K+TS + G    P E  + +   E   ++ YL  +D++ +Q      
Sbjct: 147 LSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKVGNGEKKIKSTYLSCLDNKKQQ------ 206

Query: 62  RGIGLFNLNRRRVTIG-TQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVF-- 121
                      RV  G  +  M  HE  R        SHR  P+ R+DGW+E++LG F  
Sbjct: 207 ---------MERVFYGQREQRMATHEVVR--------SHRREPEVRDDGWMEIELGEFET 266

Query: 122 -FHDGGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLK 157
              +G  + E+ MS+ EVKG   K G+ I GIE+RPK LK
Sbjct: 267 GSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPKPLK 283

[Close]

BLAST of Carg20437 vs. TrEMBL
Match: tr|A0A0A0LHD7|A0A0A0LHD7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G094900 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.0e-57
Identity = 119/158 (75.32%), Postives = 130/158 (82.28%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFK-LTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIV 60
           MLSPGTLY+A++VFK  TSS GFQ+QPVEVGVGL G+E  K+TVYLD+V  +WRQRHPIV
Sbjct: 168 MLSPGTLYSAHLVFKPTTSSYGFQQQPVEVGVGLTGTEPVKRTVYLDDVSRDWRQRHPIV 227

Query: 61  SRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFH 120
            RG GLFNL  RR  IGTQV  PP E TRN+APA DC  R +PKERED WLEVQLG FFH
Sbjct: 228 HRGFGLFNLGGRRSMIGTQVGTPP-EITRNDAPAVDCG-RHIPKEREDRWLEVQLGEFFH 287

Query: 121 DGGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT 158
           DG  NGELE+SVLEVKGGHWK GLLIQGIEIRPK LKT
Sbjct: 288 DGD-NGELEISVLEVKGGHWKGGLLIQGIEIRPKGLKT 322

[Close]

BLAST of Carg20437 vs. TrEMBL
Match: tr|A0A1S3B458|A0A1S3B458_CUCME (F-box protein PP2-B10-like OS=Cucumis melo OX=3656 GN=LOC103485813 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.5e-56
Identity = 118/158 (74.68%), Postives = 131/158 (82.91%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFK-LTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIV 60
           MLSPGTLYAAY+VFK  TSS GFQ+QPVEV VGL G+E  K+TVYLD+V+ +WRQRHPIV
Sbjct: 168 MLSPGTLYAAYLVFKPTTSSYGFQQQPVEVAVGLAGNETLKRTVYLDDVNRDWRQRHPIV 227

Query: 61  SRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFH 120
            RG GL NL RR + IGTQVA+ P E TRN+APA DC H  +PKERED WLEVQLG FFH
Sbjct: 228 HRGFGLLNLGRRGI-IGTQVAI-PREITRNDAPAVDCGHH-IPKEREDRWLEVQLGEFFH 287

Query: 121 DGGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDLKT 158
           D GV+GELE+SV EVKGGHWK GLLIQGIEIRPK LKT
Sbjct: 288 D-GVSGELEISVSEVKGGHWKGGLLIQGIEIRPKGLKT 321

[Close]

BLAST of Carg20437 vs. TrEMBL
Match: tr|A0A061EZ24|A0A061EZ24_THECC (Phloem protein 2-B10, putative OS=Theobroma cacao OX=3641 GN=TCM_025281 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.9e-32
Identity = 85/154 (55.19%), Postives = 101/154 (65.58%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFKLTSSD--GFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPI 60
           MLSP T Y AY+VFK T+S   GF  Q VE  VGLVG+E  K+TVYLD+ +   R R PI
Sbjct: 166 MLSPMTHYKAYLVFKATTSGAYGFDLQSVEASVGLVGTEGQKRTVYLDS-ERRRRGRFPI 225

Query: 61  VSRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFF 120
             RGIGLFN +R     G Q ++P   TT         S    PK R DGWLE++LG FF
Sbjct: 226 APRGIGLFNRSR---FFGLQASVP---TT--------ASDDQYPKVRVDGWLEIELGEFF 285

Query: 121 HDGGVNGELEMSVLEVKGGHWKSGLLIQGIEIRP 153
           ++G  + ELEMSVLE+KGGHWK GL+IQGIEIRP
Sbjct: 286 NEGCTDEELEMSVLEIKGGHWKGGLVIQGIEIRP 304

[Close]

BLAST of Carg20437 vs. TrEMBL
Match: tr|A0A2P5FYZ7|A0A2P5FYZ7_9ROSA (Phloem protein OS=Trema orientalis OX=63057 GN=TorRG33x02_010500 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.3e-32
Identity = 80/155 (51.61%), Postives = 97/155 (62.58%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFKLTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIVS 60
           MLSP TLY A +VFKLT + GF+ QPV+  VGLVG E + + VYLD     W QR  IV 
Sbjct: 182 MLSPSTLYTANLVFKLTVAYGFEHQPVDARVGLVGGETSTRLVYLDTERRRW-QRSQIVP 241

Query: 61  RGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFHD 120
           R + +F  NR    I      PP E    N   E       PKER DGW+EV+LG F++D
Sbjct: 242 RRLEIFLRNR---AIQAYETSPPREEDNINNGHEH------PKERGDGWIEVELGEFYYD 301

Query: 121 GGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPKDL 156
           G   GELE+SVLEV GG+WK GL++QGIEIRPK +
Sbjct: 302 GRQEGELEVSVLEVAGGNWKGGLIVQGIEIRPKQV 326

[Close]

BLAST of Carg20437 vs. TrEMBL
Match: tr|B9RJ44|B9RJ44_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1031050 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.2e-32
Identity = 86/154 (55.84%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 1   MLSPGTLYAAYMVFK-LTSSDGFQRQPVEVGVGLVGSEATKQTVYLDNVDSEWRQRHPIV 60
           MLSP TLY AY VFK  T + GF+ QP E  VGLVGSE  K  VYLD  +   R+R  IV
Sbjct: 161 MLSPSTLYTAYFVFKSTTGAYGFEYQPAEAVVGLVGSETCKHNVYLD-AERGRRRRSQIV 220

Query: 61  SRGIGLFNLNRRRVTIGTQVAMPPHETTRNNAPAEDCSHRVVPKEREDGWLEVQLGVFFH 120
            R IGL  LNR R+  G Q ++   E+        DC +   PKER DGWLE++LG FF 
Sbjct: 221 RRRIGL--LNRGRI-FGLQASLRNGES--------DCKY---PKERGDGWLEIELGEFFK 280

Query: 121 DGGVNGELEMSVLEVKGGHWKSGLLIQGIEIRPK 154
             G +GELE+SVLEVKGGHWK GL +QGIEIRPK
Sbjct: 281 KKGEDGELELSVLEVKGGHWKGGLAVQGIEIRPK 299

The following BLAST results are available for this feature:

BLAST of Carg20437 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949540.1	2.9e-85	99.36	F-box protein PP2-B10-like [Cucurbita moschata]	[more]
XP_023521720.1	1.8e-79	93.63	F-box protein PP2-B10-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998814.1	9.1e-79	92.99	F-box protein PP2-B10-like [Cucurbita maxima]	[more]
XP_004138901.1	1.5e-57	75.32	PREDICTED: F-box protein PP2-B10 [Cucumis sativus] >KGN61350.1 hypothetical prot...	[more]
XP_008441744.1	2.2e-56	74.68	PREDICTED: F-box protein PP2-B10-like [Cucumis melo]	[more]

BLAST of Carg20437 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02230.1	2.5e-22	40.74	phloem protein 2-B1	[more]
AT2G02240.1	2.6e-19	38.56	F-box family protein	[more]
AT2G02360.1	9.9e-19	38.06	phloem protein 2-B10	[more]
AT2G02340.1	2.2e-18	34.97	phloem protein 2-B8	[more]
AT1G09155.1	2.1e-16	35.00	phloem protein 2-B15	[more]

BLAST of Carg20437 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NPT8\|PP2B1_ARATH	4.5e-21	40.74	F-box protein PP2-B1 OS=Arabidopsis thaliana OX=3702 GN=PP2B1 PE=1 SV=1	[more]
sp\|Q3E6P4\|FB95_ARATH	4.7e-18	38.56	F-box protein At2g02240 OS=Arabidopsis thaliana OX=3702 GN=At2g02240 PE=2 SV=1	[more]
sp\|Q9ZVQ6\|P2B10_ARATH	1.8e-17	38.06	F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3702 GN=PP2B10 PE=1 SV=1	[more]
sp\|Q9ZVQ8\|PP2B8_ARATH	4.0e-17	34.97	Putative F-box protein PP2-B8 OS=Arabidopsis thaliana OX=3702 GN=PP2B8 PE=4 SV=1	[more]
sp\|O80494\|P2B15_ARATH	3.7e-15	35.00	F-box protein PP2-B15 OS=Arabidopsis thaliana OX=3702 GN=PP2B15 PE=2 SV=2	[more]

BLAST of Carg20437 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHD7\|A0A0A0LHD7_CUCSA	1.0e-57	75.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G094900 PE=4 SV=1	[more]
tr\|A0A1S3B458\|A0A1S3B458_CUCME	1.5e-56	74.68	F-box protein PP2-B10-like OS=Cucumis melo OX=3656 GN=LOC103485813 PE=4 SV=1	[more]
tr\|A0A061EZ24\|A0A061EZ24_THECC	1.9e-32	55.19	Phloem protein 2-B10, putative OS=Theobroma cacao OX=3641 GN=TCM_025281 PE=4 SV=...	[more]
tr\|A0A2P5FYZ7\|A0A2P5FYZ7_9ROSA	3.3e-32	51.61	Phloem protein OS=Trema orientalis OX=63057 GN=TorRG33x02_010500 PE=4 SV=1	[more]
tr\|B9RJ44\|B9RJ44_RICCO	4.2e-32	55.84	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1031050 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025886	PP2-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20437-RA	Carg20437-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025886	Phloem protein 2-like	PFAM	PF14299	PP2	coord: 1..152 e-value: 2.2E-24 score: 86.1
None	No IPR available	PANTHER	PTHR32278	FAMILY NOT NAMED	coord: 1..154

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20437	Cla004148	Watermelon (97103) v1	carwmB0699
Carg20437	Csa2G094900	Cucumber (Chinese Long) v2	carcuB0719
Carg20437	MELO3C008578	Melon (DHL92) v3.5.1	carmeB0698
Carg20437	ClCG11G009790	Watermelon (Charleston Gray)	carwcgB0676
Carg20437	CSPI02G08040	Wild cucumber (PI 183967)	carcpiB0734
Carg20437	Cucsa.189330	Cucumber (Gy14) v1	carcgyB0782
Carg20437	CmaCh01G004920	Cucurbita maxima (Rimu)	carcmaB0982
Carg20437	CmoCh01G005260	Cucurbita moschata (Rifu)	carcmoB0954
Carg20437	Lsi11G009540	Bottle gourd (USVL1VR-Ls)	carlsiB639
Carg20437	Cp4.1LG11g07050	Cucurbita pepo (Zucchini)	carcpeB0980
Carg20437	Cp4.1LG02g12410	Cucurbita pepo (Zucchini)	carcpeB0982
Carg20437	CsGy2G008310	Cucumber (Gy14) v2	carcgybB0696
Carg20437	MELO3C008578.2	Melon (DHL92) v3.6.1	carmedB0711
Carg20437	CsaV3_2G010420	Cucumber (Chinese Long) v3	carcucB0737
Carg20437	Cla97C11G216140	Watermelon (97103) v2	carwmbB0729
Carg20437	Bhi06G000810	Wax gourd	carwgoB0822

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None