Carg20267 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAAGATTTGACCTTTTTTGCAAATCCAGAGCTTCCACGGCGGTTCGTTCAAGCTTTGGCTGCCGTCCGGTCGCCGGAGATGTCAATTCCGGCGATGGGAGAAAAGTGCAGCTTCATTTTGAAAAGCCCAGAAAGAGTACGAGTGTTTCCTCTGTGAATCGAAAGGATCATATCGATTTACGAAGAAAAAGCTGTGCGGATATGGATGATTTGAAGAACAGCTCTGTTTCTGGTTCTTCTTCTCGTTATCTGTTGGGCGATTCGCCGTTCATTAACTGGCTTCCGGCAACCGCCGTCGAGGATTTTTCTCAGGCTCCGGCGACGATGAGCCATGGTTCTAAGAAGGCTTCTTCGTTGAGTCGTTCGTTAAGTGTACATGAATCTCCTTCCTCTGTTCTTGAATCCCCTGTTCTGAAAACTTCTTCTTCAGCTCACTCTCGTGTATGA ATGAAAAGATTTGACCTTTTTTGCAAATCCAGAGCTTCCACGGCGGTTCGTTCAAGCTTTGGCTGCCGTCCGGTCGCCGGAGATGTCAATTCCGGCGATGGGAGAAAAGTGCAGCTTCATTTTGAAAAGCCCAGAAAGAGTACGAGTGTTTCCTCTGTGAATCGAAAGGATCATATCGATTTACGAAGAAAAAGCTGTGCGGATATGGATGATTTGAAGAACAGCTCTGTTTCTGGTTCTTCTTCTCGTTATCTGTTGGGCGATTCGCCGTTCATTAACTGGCTTCCGGCAACCGCCGTCGAGGATTTTTCTCAGGCTCCGGCGACGATGAGCCATGGTTCTAAGAAGGCTTCTTCGTTGAGTCGTTCGTTAAGTGTACATGAATCTCCTTCCTCTGTTCTTGAATCCCCTGTTCTGAAAACTTCTTCTTCAGCTCACTCTCGTGTATGA ATGAAAAGATTTGACCTTTTTTGCAAATCCAGAGCTTCCACGGCGGTTCGTTCAAGCTTTGGCTGCCGTCCGGTCGCCGGAGATGTCAATTCCGGCGATGGGAGAAAAGTGCAGCTTCATTTTGAAAAGCCCAGAAAGAGTACGAGTGTTTCCTCTGTGAATCGAAAGGATCATATCGATTTACGAAGAAAAAGCTGTGCGGATATGGATGATTTGAAGAACAGCTCTGTTTCTGGTTCTTCTTCTCGTTATCTGTTGGGCGATTCGCCGTTCATTAACTGGCTTCCGGCAACCGCCGTCGAGGATTTTTCTCAGGCTCCGGCGACGATGAGCCATGGTTCTAAGAAGGCTTCTTCGTTGAGTCGTTCGTTAAGTGTACATGAATCTCCTTCCTCTGTTCTTGAATCCCCTGTTCTGAAAACTTCTTCTTCAGCTCACTCTCGTGTATGA MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAVEDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
BLAST of Carg20267 vs. NCBI nr
Match: XP_022947509.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 3-like [Cucurbita moschata]) HSP 1 Score: 277.3 bits (708), Expect = 3.0e-71 Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 0
BLAST of Carg20267 vs. NCBI nr
Match: XP_023532289.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 270.8 bits (691), Expect = 2.8e-69 Identity = 144/149 (96.64%), Postives = 145/149 (97.32%), Query Frame = 0
BLAST of Carg20267 vs. NCBI nr
Match: XP_023006946.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 2-like [Cucurbita maxima]) HSP 1 Score: 265.0 bits (676), Expect = 1.5e-67 Identity = 141/149 (94.63%), Postives = 142/149 (95.30%), Query Frame = 0
BLAST of Carg20267 vs. NCBI nr
Match: XP_022986932.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like [Cucurbita maxima]) HSP 1 Score: 179.9 bits (455), Expect = 6.5e-42 Identity = 108/155 (69.68%), Postives = 118/155 (76.13%), Query Frame = 0
BLAST of Carg20267 vs. NCBI nr
Match: XP_022944121.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like [Cucurbita moschata]) HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41 Identity = 108/155 (69.68%), Postives = 118/155 (76.13%), Query Frame = 0
BLAST of Carg20267 vs. TrEMBL
Match: tr|A0A0A0KG24|A0A0A0KG24_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G302690 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 1.4e-37 Identity = 100/160 (62.50%), Postives = 117/160 (73.12%), Query Frame = 0
BLAST of Carg20267 vs. TrEMBL
Match: tr|A0A2C9V283|A0A2C9V283_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G135800 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09 Identity = 66/171 (38.60%), Postives = 84/171 (49.12%), Query Frame = 0
BLAST of Carg20267 vs. TrEMBL
Match: tr|K7LPR8|K7LPR8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100807544 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 9.0e-08 Identity = 62/171 (36.26%), Postives = 82/171 (47.95%), Query Frame = 0
BLAST of Carg20267 vs. TrEMBL
Match: tr|A0A1S4BXF1|A0A1S4BXF1_TOBAC (uncharacterized protein LOC107812913 OS=Nicotiana tabacum OX=4097 GN=LOC107812913 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07 Identity = 60/167 (35.93%), Postives = 81/167 (48.50%), Query Frame = 0
BLAST of Carg20267 vs. TrEMBL
Match: tr|A0A1U7XHC4|A0A1U7XHC4_NICSY (uncharacterized protein DDB_G0271670 OS=Nicotiana sylvestris OX=4096 GN=LOC104234074 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07 Identity = 60/167 (35.93%), Postives = 81/167 (48.50%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |