Carg20248 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20248
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dna repair protein rad51 like 2
Location	Cucurbita_argyrosperma_scaffold_131 : 102670 .. 105964 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCATTCTAGGGTTTCGCATTTGGCGGGGAAGGAAAAGCGGACCGAGATAGCATGGTTTGACAGAGAGATTGAAGGAGATAGAATGACGAACAAATTAATGAATCAGATGGGATTACACCAATCGATAACTAATATTTTCGCAGAGCGAATTATTAACACAGCCAAGGTAATGATTGAACTTCGTGTATCTTCTTCATTAATTCCTCGATTTATTCGTCCACTTCGTGTTTAATACGCCATAGGAACCGATCTGAAGCTTTCAATTATGTAGTTTAGGCTAACTTCTTTTTTCAGTTTCTCGATTGACCGCTAATTGGAATTTCTTTACGTAGAAATTGAACAATGGCAATGGTTCTTAATTTAGACTTGGTTCATAATGTCATGTATTGAACGGGAGTTTCTCTTTTGAAATATTTTTCCAGGCTTGTTCTCTGTTCTTGGTTGGATTAGTTTTCGGCCCTGTAGCCGGTTTTAGCCTATAGAAAATTAAAAATTGCAGTATTGGTTTATTTAATTTGTTTCAGGAAGCTTTATCCTTAACTGAATTTGAGTTGATGGAGTTATTGGACGTGGGATTGTTGGAAGTTGCATCAGCAGTTGCGCACATTATTGAAATTGCTTCTCCTCCTTATCAGACGGTAAGAAATCAGTTGCTTCTATTTATTGATTGTCAAGCTCATTATACTTGTCTAAGAGGATTCTTTTTTGTTTATGCTTTCCACATCCCTGACTTCTGTTGCTTTTAGAGGTGATGATCTAGTTGCATCAATTGGTGCTTTCTCTAATGGATCAAAGACTTCAAAACGAGCATTTAACTGGCCATCTTTCTACATGTTTAAAAGGTTTAGACGAGGCCTTATTTGGTGGAATCCCATTTGGTGTCTTGACAGAGCTTGTTGGTCCAGCTTGAATTGGCCAAACGCAAGTGTGATTCTTTCCTAGTTTTCGGGTTTGTTAATTATCTTTTTGTTATATCAGAAAATTTTCGTTGATTGGATTGGAGTATTAATTGGAATATATGGTTGCTTAAGTTGAAGCATGTTCAACTACTTTCTGCTGACATGCGACTTTTTCTGGTTGTTGAATTTCAGTTTTGCTTGAAACTCTCTTTATTGGCTGCTCTGCCACCGAGCTATGGAAGTTTAGATGGCAGAGTAATATATATTGATGTAGAATCTAAGTTTAGTTCCAGAAGGTCTTTTAATTATACCATGCTACTGGTTGTTTACTCATTATATCTGTGTAATGGGCGCATGACTTTTTTGGTTTTTCAATTCCGTCTCTCTCGGCAGGATGATTGAAATTGACATGAGAAGCTTTCCTGATGTATTGGAAATGAAGGACATAGCACAAGAGGTATCAAACTGATATATATTCTCTTCCTTTCAAATTTTAATTTAAAATGCATAAGATGGATCATTCTCAATTTTCATTCCAGATGGCTGGTAGGATTCTTGTTTTGCCACCTGCTTCACTTTCTGAATTCAATGAGAGGTTTGGATCAAAGTCAAATAAATGTCATTTGGCCTAGACATGTCAATGATTTGAGAAAATGAAATGCTAAGGATAACACATTTAATCTACAAAATTTAGCAGAATATTTAGACGCATGTAATGCAGTTCGAGGTATGAACATATTAGCTCAATTGCAATGATTTACCTGCAATGGCATGGAATATTCAAATAGAACACAATTCAGGTGCTTGTTAGGACTGGGATTTCGTGGATTATCCATATATAGCCTATAGATAATCATCAATCATTGGTTAGAATAATGAAGATTGTAAACGGAAAAGAAAAATGAATGCTGAACTTACTCATATATTTTTAGAGTTTATTCCCAACCAATGTCTGATGTCAAGTTCCAGAGCGTTTATCTGATCACCTTCTGTATAGACAGGCACAAGTTTGCAACTCAAATGTGACTGGAGATTAAATGAAATGCAGTTATATGCATTCGTTTAAGTTATAGCAATGGATCTGAATAAGTCTGTATCATATAGTGCTTTTGCGAGAGATTGACTGTGCACACTTGACTTGCATCTCTCAAACTCGATTCAGTTATCTAATAAAATTGCTGTGAATTCTACATGTGGAGGCTCTTCTCTTTTCCCATTAACCTACAAACCCATGAAAGATTTTCAATATCTGTATTGTTATAGCACTATGGTTCATTGACTCATTCTGTGACAATTTGTTTGGTGCTTGAAGCAAAATCTGGTTGGAACACTTTTCACTGATTATTGCCATTTAGCTGATATAATGCTCAAATGGCTCTGATGTCAACGGATCTTTATGTTTAATGATATCTTCTCGACTTGTTTAAGTTTTAAGCAAGATAGGGGCAGTCGAAACTAGAGAAAGTGCTTCTAACAATGTTTCATAACTCATCATTTCCATCATCCCTCATAGGTCAGAGGTTCATCAAGATTGCAAAGTCTCCAATGTCTCCACCCCTACCTTTCCCTTTTATCATAACCTCATCCTGAATTTCATTGCCAAGTGACAATTGAAAAGAACCAAGTGGAGCTGAGATCAATGAGAATCACCGTCAAGGTTTCTGTTACTCCCTAGGAAGAACGGTACTAACATAAACAGCGCCTTCTCTTCAATTAAAAATCTAGATGGACATAAGTTAGAAGCTCAAGGACTCTCAAAACACTTTACTCTTTGTTTTCTCTAAAACATTTTGAACTGATAGTTGCAAATTCAATATCATTGCCTCTATGATGTTAATGACTTATCTCCCAGCTTCATTGTCTGAAATTTACCAAGAATGCTACGAGAAGTTGATGTTTTTAGTGTATTATATTCTATTATTAAGCCTAAGATATACTCCGTACTAGGTTTCTCTTTAGCTTTGTTGTTTTTTGGTTGTTTGACTGTATGACATTAATGCAGGACACGGTGATATTATCAGCTATTTTTGGAAAATGAGCAACGTGAATGGGACTGCTAAAAATCTCAGGCTTGTCATGCATATACGAGACTTATGCTGAATTGGTGGTTTCCTGTTGTTAATGGTCGGTTAATGAGGAAATAGTTCATTAATTTCGAATTATGATTTGGATTCTCATTTCATGTTCAATTTTAACATTTGAAATTACAGTGAATATTTTTCCTATTTCATGAGAATCCATGATTATTCTACCATTTTCTTTTTTATCAGGTTATATTAAGCGGATAGCTTAGAACTAACCAACCAAACATGGAAGATGGAAAAGATATCAAAGCTGCGGATGATTTTTGTGGAGAGGAATCGTTTGCCTAGTTTCTTAGTGATAAAAATGTT

mRNA sequence

AAACCATTCTAGGGTTTCGCATTTGGCGGGGAAGGAAAAGCGGACCGAGATAGCATGGTTTGACAGAGAGATTGAAGGAGATAGAATGACGAACAAATTAATGAATCAGATGGGATTACACCAATCGATAACTAATATTTTCGCAGAGCGAATTATTAACACAGCCAAGGAAGCTTTATCCTTAACTGAATTTGAGTTGATGGAGTTATTGGACGTGGGATTGTTGGAAGTTGCATCAGCAGTTGCGCACATTATTGAAATTGCTTCTCCTCCTTATCAGACGGTGCTTTCTCTAATGGATCAAAGACTTCAAAACGAGCATTTAACTGGCCATCTTTCTACATGTTTAAAAGGTTTAGACGAGGCCTTATTTGGTGGAATCCCATTTGGTGTCTTGACAGAGCTTGTTGGTCCAGCTTGAATTGGCCAAACGCAATTTTGCTTGAAACTCTCTTTATTGGCTGCTCTGCCACCGAGCTATGGAAGTTTAGATGGCAGAGTAATATATATTGATGTAGAATCTAAGTTTAGTTCCAGAAGGTCTTTTAATTATACCATGCTACTGGTTGTTTACTCATTATATCTGTGTAATGGGCGCATGACTTTTTTGGTTTTTCAATTCCGTCTCTCTCGGCAGGATGATTGAAATTGACATGAGAAGCTTTCCTGATGTATTGGAAATGAAGGACATAGCACAAGAGGTCAGAGGTTCATCAAGATTGCAAAGTCTCCAATGTCTCCACCCCTACCTTTCCCTTTTATCATAACCTCATCCTGAATTTCATTGCCAAGTGACAATTGAAAAGAACCAAGTGGAGCTGAGATCAATGAGAATCACCGTCAAGGTTTCTGTTACTCCCTAGGAAGAACGGTACTAACATAAACAGCGCCTTCTCTTCAATTAAAAATCTAGATGGACATAAGTTAGAAGCTCAAGGACTCTCAAAACACTTTACTCTTTGTTTTCTCTAAAACATTTTGAACTGATAGTTGCAAATTCAATATCATTGCCTCTATGATGTTAATGACTTATCTCCCAGCTTCATTGTCTGAAATTTACCAAGAATGCTACGAGAAGTTGATGTTTTTAGTGTATTATATTCTATTATTAAGCCTAAGATATACTCCGTACTAGGTTTCTCTTTAGCTTTGTTGTTTTTTGGTTGTTTGACTGTATGACATTAATGCAGGACACGGTGATATTATCAGCTATTTTTGGAAAATGAGCAACGTGAATGGGACTGCTAAAAATCTCAGGCTTGTCATGCATATACGAGACTTATGCTGAATTGGTGGTTTCCTGTTGTTAATGGTTATATTAAGCGGATAGCTTAGAACTAACCAACCAAACATGGAAGATGGAAAAGATATCAAAGCTGCGGATGATTTTTGTGGAGAGGAATCGTTTGCCTAGTTTCTTAGTGATAAAAATGTT

Coding sequence (CDS)

ATGACGAACAAATTAATGAATCAGATGGGATTACACCAATCGATAACTAATATTTTCGCAGAGCGAATTATTAACACAGCCAAGGAAGCTTTATCCTTAACTGAATTTGAGTTGATGGAGTTATTGGACGTGGGATTGTTGGAAGTTGCATCAGCAGTTGCGCACATTATTGAAATTGCTTCTCCTCCTTATCAGACGGTGCTTTCTCTAATGGATCAAAGACTTCAAAACGAGCATTTAACTGGCCATCTTTCTACATGTTTAAAAGGTTTAGACGAGGCCTTATTTGGTGGAATCCCATTTGGTGTCTTGACAGAGCTTGTTGGTCCAGCTTGA

Protein sequence

MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIASPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGPA

Homology

[Close]

BLAST of Carg20248 vs. NCBI nr
Match: XP_022943313.1 (DNA repair protein RAD51 homolog 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 190.7 bits (483), Expect = 2.7e-45
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M NKL+NQMGL +SI NIFA R INTAKEALSLTEFELMELLDVGL EVASAVAHI EIA
Sbjct: 1   MANKLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIA 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGPA 112
           SPPYQTVLSLM+QRLQNEHL GHLSTCLKGLDEALFGGIPFGVLTELVGPA
Sbjct: 61  SPPYQTVLSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPA 111

[Close]

BLAST of Carg20248 vs. NCBI nr
Match: XP_022943309.1 (DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita moschata] >XP_022943310.1 DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita moschata] >XP_022943311.1 DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita moschata] >XP_022943312.1 DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita moschata] >XP_023511983.1 DNA repair protein RAD51 homolog 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.7 bits (483), Expect = 2.7e-45
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M NKL+NQMGL +SI NIFA R INTAKEALSLTEFELMELLDVGL EVASAVAHI EIA
Sbjct: 1   MANKLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIA 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGPA 112
           SPPYQTVLSLM+QRLQNEHL GHLSTCLKGLDEALFGGIPFGVLTELVGPA
Sbjct: 61  SPPYQTVLSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPA 111

[Close]

BLAST of Carg20248 vs. NCBI nr
Match: XP_022986663.1 (DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita maxima] >XP_022986664.1 DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita maxima] >XP_022986665.1 DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 190.7 bits (483), Expect = 2.7e-45
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M NKL+NQMGL +SI NIFA R INTAKEALSLTEFELMELLDVGL EVASAVAHI EIA
Sbjct: 1   MANKLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIA 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGPA 112
           SPPYQTVLSLM+QRLQNEHL GHLSTCLKGLDEALFGGIPFGVLTELVGPA
Sbjct: 61  SPPYQTVLSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPA 111

[Close]

BLAST of Carg20248 vs. NCBI nr
Match: XP_022986666.1 (DNA repair protein RAD51 homolog 2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 190.7 bits (483), Expect = 2.7e-45
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M NKL+NQMGL +SI NIFA R INTAKEALSLTEFELMELLDVGL EVASAVAHI EIA
Sbjct: 1   MANKLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIA 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGPA 112
           SPPYQTVLSLM+QRLQNEHL GHLSTCLKGLDEALFGGIPFGVLTELVGPA
Sbjct: 61  SPPYQTVLSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPA 111

[Close]

BLAST of Carg20248 vs. NCBI nr
Match: XP_004149537.1 (PREDICTED: DNA repair protein RAD51 homolog 2 isoform X1 [Cucumis sativus] >KGN47322.1 hypothetical protein Csa_6G296460 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M N+L+NQMGL +SI NIFA R INTAKEALSLTEFELMELLDVGL EVASAVAHI EIA
Sbjct: 1   MANRLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIA 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGPA 112
           SPPYQT LSLM+QRLQNEHL GHLSTCLKGLDEALFGGIPFGVLTELVGPA
Sbjct: 61  SPPYQTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPA 111

[Close]

BLAST of Carg20248 vs. TAIR10
Match: AT2G28560.1 (DNA repair (Rad51) family protein)

HSP 1 Score: 143.7 bits (361), Expect = 7.0e-35
Identity = 72/110 (65.45%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M NKL+ +MGLH  I+NIFA R I TAK+ALS+TEFELMELLDVG+ E+ SA++ I E  
Sbjct: 1   MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGP 111
           SPP Q+  SL++++++NEHL+GHL T LKGLD+ L GGIPFGVLTELVGP
Sbjct: 61  SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGP 110

[Close]

BLAST of Carg20248 vs. Swiss-Prot
Match: sp|Q9SK02|RA51B_ARATH (DNA repair protein RAD51 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=RAD51B PE=2 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-33
Identity = 72/110 (65.45%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M NKL+ +MGLH  I+NIFA R I TAK+ALS+TEFELMELLDVG+ E+ SA++ I E  
Sbjct: 1   MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGP 111
           SPP Q+  SL++++++NEHL+GHL T LKGLD+ L GGIPFGVLTELVGP
Sbjct: 61  SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGP 110

[Close]

BLAST of Carg20248 vs. Swiss-Prot
Match: sp|O15315|RA51B_HUMAN (DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 35/110 (31.82%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M +K + ++GL Q + +  +   I T ++ L L+  ELM++  +    V   +  +    
Sbjct: 1   MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGP 111
           +P  QT   +  QR   +     LST L  LDEAL GG+  G LTE+ GP
Sbjct: 61  APKMQTAYGIKAQR-SADFSPAFLSTTLSALDEALHGGVACGSLTEITGP 109

[Close]

BLAST of Carg20248 vs. Swiss-Prot
Match: sp|O35719|RA51B_MOUSE (DNA repair protein RAD51 homolog 2 OS=Mus musculus OX=10090 GN=Rad51b PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M++K + ++GL   + +  +   I   +  LSL+  ELM++  +    V   +  + +  
Sbjct: 1   MSSKKLRRVGLSPELCDRLSRYQIVNCQHFLSLSPLELMKVTGLSYRGVHELLHTVSKAC 60

Query: 61  SPPYQTVLSLMDQRLQNEHLT-GHLSTCLKGLDEALFGGIPFGVLTELVGP 111
           +P  QT   L  +R  + HL+   LST L  LDEAL GG+P G LTE+ GP
Sbjct: 61  APQMQTAYELKTRR--SAHLSPAFLSTTLCALDEALHGGVPCGSLTEITGP 109

[Close]

BLAST of Carg20248 vs. TrEMBL
Match: tr|A0A0A0KFZ1|A0A0A0KFZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G296460 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-44
Identity = 98/111 (88.29%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M N+L+NQMGL +SI NIFA R INTAKEALSLTEFELMELLDVGL EVASAVAHI EIA
Sbjct: 1   MANRLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIA 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGPA 112
           SPPYQT LSLM+QRLQNEHL GHLSTCLKGLDEALFGGIPFGVLTELVGPA
Sbjct: 61  SPPYQTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPA 111

[Close]

BLAST of Carg20248 vs. TrEMBL
Match: tr|A0A1S3CKQ5|A0A1S3CKQ5_CUCME (DNA repair protein RAD51 homolog 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501904 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.6e-44
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M N+L+NQMGL +SI NIFA R INTAKEALSLTEFELMELLDVGL +VASAVAHI EIA
Sbjct: 1   MANRLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSDVASAVAHISEIA 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGPA 112
           SPPYQT LSLM+QRLQNEHL GHLSTCLKGLDEALFGGIPFGVLTELVGPA
Sbjct: 61  SPPYQTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPA 111

[Close]

BLAST of Carg20248 vs. TrEMBL
Match: tr|A0A1S4E4D5|A0A1S4E4D5_CUCME (DNA repair protein RAD51 homolog 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501904 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 97/132 (73.48%), Postives = 102/132 (77.27%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAK---------------------EALSLTEFELM 60
           M N+L+NQMGL +SI NIFA R INTAK                     EALSLTEFELM
Sbjct: 1   MANRLINQMGLPRSIANIFAARNINTAKSEFVMSPIEWDSLFWVLFPGSEALSLTEFELM 60

Query: 61  ELLDVGLLEVASAVAHIIEIASPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGI 112
           ELLDVGL +VASAVAHI EIASPPYQT LSLM+QRLQNEHL GHLSTCLKGLDEALFGGI
Sbjct: 61  ELLDVGLSDVASAVAHISEIASPPYQTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGI 120

[Close]

BLAST of Carg20248 vs. TrEMBL
Match: tr|A0A251KZT3|A0A251KZT3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G027100 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.4e-36
Identity = 83/111 (74.77%), Postives = 93/111 (83.78%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M NKL+++MGL +SI NIFA R INTAK+ALSLTEFELMELLDVG+ +V SAVAHI  + 
Sbjct: 1   MANKLISEMGLPKSIANIFAARNINTAKDALSLTEFELMELLDVGMADVTSAVAHISAVV 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGPA 112
           SPPYQT L LM+QRLQNE   GHL T LKGLD+AL GGIPFGVLTELVGPA
Sbjct: 61  SPPYQTALFLMEQRLQNEQFAGHLPTRLKGLDDALCGGIPFGVLTELVGPA 111

[Close]

BLAST of Carg20248 vs. TrEMBL
Match: tr|A0A251L0B5|A0A251L0B5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G027100 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 3.4e-36
Identity = 83/111 (74.77%), Postives = 93/111 (83.78%), Query Frame = 0


Query: 1   MTNKLMNQMGLHQSITNIFAERIINTAKEALSLTEFELMELLDVGLLEVASAVAHIIEIA 60
           M NKL+++MGL +SI NIFA R INTAK+ALSLTEFELMELLDVG+ +V SAVAHI  + 
Sbjct: 1   MANKLISEMGLPKSIANIFAARNINTAKDALSLTEFELMELLDVGMADVTSAVAHISAVV 60

Query: 61  SPPYQTVLSLMDQRLQNEHLTGHLSTCLKGLDEALFGGIPFGVLTELVGPA 112
           SPPYQT L LM+QRLQNE   GHL T LKGLD+AL GGIPFGVLTELVGPA
Sbjct: 61  SPPYQTALFLMEQRLQNEQFAGHLPTRLKGLDDALCGGIPFGVLTELVGPA 111

The following BLAST results are available for this feature:

BLAST of Carg20248 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943313.1	2.7e-45	90.09	DNA repair protein RAD51 homolog 2 isoform X2 [Cucurbita moschata]	[more]
XP_022943309.1	2.7e-45	90.09	DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita moschata] >XP_022943310...	[more]
XP_022986663.1	2.7e-45	90.09	DNA repair protein RAD51 homolog 2 isoform X1 [Cucurbita maxima] >XP_022986664.1...	[more]
XP_022986666.1	2.7e-45	90.09	DNA repair protein RAD51 homolog 2 isoform X2 [Cucurbita maxima]	[more]
XP_004149537.1	1.8e-44	88.29	PREDICTED: DNA repair protein RAD51 homolog 2 isoform X1 [Cucumis sativus] >KGN4...	[more]

BLAST of Carg20248 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28560.1	7.0e-35	65.45	DNA repair (Rad51) family protein	[more]

BLAST of Carg20248 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SK02\|RA51B_ARATH	1.3e-33	65.45	DNA repair protein RAD51 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=RAD51B PE=...	[more]
sp\|O15315\|RA51B_HUMAN	1.0e-06	31.82	DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2	[more]
sp\|O35719\|RA51B_MOUSE	1.0e-06	33.33	DNA repair protein RAD51 homolog 2 OS=Mus musculus OX=10090 GN=Rad51b PE=2 SV=2	[more]

BLAST of Carg20248 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFZ1\|A0A0A0KFZ1_CUCSA	1.2e-44	88.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G296460 PE=4 SV=1	[more]
tr\|A0A1S3CKQ5\|A0A1S3CKQ5_CUCME	2.6e-44	87.39	DNA repair protein RAD51 homolog 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A1S4E4D5\|A0A1S4E4D5_CUCME	1.3e-40	73.48	DNA repair protein RAD51 homolog 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A251KZT3\|A0A251KZT3_MANES	3.4e-36	74.77	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G027100 PE=4 SV=...	[more]
tr\|A0A251L0B5\|A0A251L0B5_MANES	3.4e-36	74.77	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G027100 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008094	DNA-dependent ATPase activity
GO:0005524	ATP binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair
GO:0000724	double-strand break repair via homologous recombination

Vocabulary: **Cellular Component**
Term	Definition
GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex

Vocabulary: **INTERPRO**
Term	Definition
IPR020588	RecA_ATP-bd
IPR030548	RAD51B

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008094	DNA-dependent ATPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20248-RA	Carg20248-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030548	DNA repair protein RAD51 homologue 2	PANTHER	PTHR22942:SF15	DNA REPAIR PROTEIN RAD51 HOMOLOG 2	coord: 1..111
None	No IPR available	PANTHER	PTHR22942	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	coord: 1..111
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 80..111 score: 14.181

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20248	Cla013251	Watermelon (97103) v1	carwmB0302
Carg20248	Csa6G296460	Cucumber (Chinese Long) v2	carcuB0334
Carg20248	MELO3C025727	Melon (DHL92) v3.5.1	carmeB0307
Carg20248	ClCG02G020790	Watermelon (Charleston Gray)	carwcgB0299
Carg20248	CSPI06G16430	Wild cucumber (PI 183967)	carcpiB0340
Carg20248	CmaCh20G004590	Cucurbita maxima (Rimu)	carcmaB0424
Carg20248	CmaCh02G008610	Cucurbita maxima (Rimu)	carcmaB0425
Carg20248	CmoCh02G008610	Cucurbita moschata (Rifu)	carcmoB0421
Carg20248	CmoCh20G004940	Cucurbita moschata (Rifu)	carcmoB0420
Carg20248	Lsi10G013110	Bottle gourd (USVL1VR-Ls)	carlsiB279
Carg20248	Cp4.1LG16g05650	Cucurbita pepo (Zucchini)	carcpeB0423
Carg20248	CsGy6G015960	Cucumber (Gy14) v2	carcgybB0318
Carg20248	MELO3C025727.2	Melon (DHL92) v3.6.1	carmedB0317
Carg20248	CsaV3_6G021820	Cucumber (Chinese Long) v3	carcucB0339
Carg20248	Cla97C02G046820	Watermelon (97103) v2	carwmbB0315
Carg20248	Bhi10G000495	Wax gourd	carwgoB0392

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20248	Carg03268	Silver-seed gourd	carcarB330

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20248	Silver-seed gourd	carcarB185
Carg20248	Silver-seed gourd	carcarB332
Carg20248	Silver-seed gourd	carcarB337
Carg20248	Cucumber (Gy14) v1	carcgyB0358
Carg20248	Cucurbita maxima (Rimu)	carcmaB0427
Carg20248	Cucurbita maxima (Rimu)	carcmaB0428
Carg20248	Cucurbita maxima (Rimu)	carcmaB0429
Carg20248	Cucurbita maxima (Rimu)	carcmaB0422
Carg20248	Cucurbita moschata (Rifu)	carcmoB0418
Carg20248	Cucurbita moschata (Rifu)	carcmoB0422
Carg20248	Cucurbita moschata (Rifu)	carcmoB0423
Carg20248	Cucurbita pepo (Zucchini)	carcpeB0424
Carg20248	Cucurbita pepo (Zucchini)	carcpeB0427
Carg20248	Cucurbita pepo (Zucchini)	carcpeB0429
Carg20248	Cucurbita pepo (Zucchini)	carcpeB0430
Carg20248	Wild cucumber (PI 183967)	carcpiB0338
Carg20248	Cucumber (Chinese Long) v2	carcuB0332
Carg20248	Bottle gourd (USVL1VR-Ls)	carlsiB282
Carg20248	Melon (DHL92) v3.5.1	carmeB0305
Carg20248	Melon (DHL92) v3.5.1	carmeB0310
Carg20248	Melon (DHL92) v3.6.1	carmedB0319
Carg20248	Watermelon (Charleston Gray)	carwcgB0297
Carg20248	Watermelon (97103) v1	carwmB0297
Carg20248	Watermelon (97103) v2	carwmbB0313
Carg20248	Watermelon (97103) v2	carwmbB0318
Carg20248	Wax gourd	carwgoB0391