Carg20243 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTATCTCCCTGCGTTACTCCTTTCTCAACAAACCTCTCTCTCTCTCTCTATAGCAAATACAGAACTCAGTCTTCCAACCTTCATCCATTCGCTGGTTTTATGAATGGATCATTCAAGCGGCCAACAAGTAAGGATTAGAATGGTTTTTGTTCAAGTTCTCAAGATATCCATTAATTTCAACTCCTGATTTGTTTGTTTAATTTTACTTCAGGAAGCTCAAGCCCGACCACTGGAGGACATGGTGGGCGTGATTTCATGTCCAAAAGTGCAGCAAGAAAACAGGAAGCCAATGAGGCCACAGCCAGAGCAAGTCCTGAGATGCCCAAGATGTGATTCTACCAACACCAAGTTCTGCTACTACAATAACTACAGTCTCTCCCAGCCAAGGTACTTTTGCAAGTCCTGTAGAAGGTATTGGACTAAAGGGGGAACTCTAAGAAATGTTCCTGTGGGTGGCTCTTGCAGGAAGAACAAAAGACCTTCACCTTCTACTTCATCTTCTTCCTCTCCATCTCCATCTTCAAAGAGATCACATGATCAGGTCGCCAATTCTAGCTATGCTAAGCTTCTAAATCAATCAAATGGAAGCATGGGTCTTTTTGATACCCACAGCAACTATCATAATATGTACAGTGGATTTGGTAATGGAAGCTCTGGGGAGGTTGAACATGGGTCTACAGAGACTGCTACAGCAATGAAGCAAGAGTTGCTACCCAATGGAGATCAAAATATGGTTTGTTGGGGATTTCCATGGCAGTTCAACAATGGGGATGGAAATTACATGGGTGATCTTGATTCTGGAAGAGAAAGCTGGAGTTTCAATGGAAATGGAATTGCTTCATCTTGGCATGGGCTTCTCAACAGTCCTCTAATGTAA TTTATCTCCCTGCGTTACTCCTTTCTCAACAAACCTCTCTCTCTCTCTCTATAGCAAATACAGAACTCAGTCTTCCAACCTTCATCCATTCGCTGGTTTTATGAATGGATCATTCAAGCGGCCAACAAGAAGCTCAAGCCCGACCACTGGAGGACATGGTGGGCGTGATTTCATGTCCAAAAGTGCAGCAAGAAAACAGGAAGCCAATGAGGCCACAGCCAGAGCAAGTCCTGAGATGCCCAAGATGTGATTCTACCAACACCAAGTTCTGCTACTACAATAACTACAGTCTCTCCCAGCCAAGGTACTTTTGCAAGTCCTGTAGAAGGTATTGGACTAAAGGGGGAACTCTAAGAAATGTTCCTGTGGGTGGCTCTTGCAGGAAGAACAAAAGACCTTCACCTTCTACTTCATCTTCTTCCTCTCCATCTCCATCTTCAAAGAGATCACATGATCAGGTCGCCAATTCTAGCTATGCTAAGCTTCTAAATCAATCAAATGGAAGCATGGGTCTTTTTGATACCCACAGCAACTATCATAATATGTACAGTGGATTTGGTAATGGAAGCTCTGGGGAGGTTGAACATGGGTCTACAGAGACTGCTACAGCAATGAAGCAAGAGTTGCTACCCAATGGAGATCAAAATATGGTTTGTTGGGGATTTCCATGGCAGTTCAACAATGGGGATGGAAATTACATGGGTGATCTTGATTCTGGAAGAGAAAGCTGGAGTTTCAATGGAAATGGAATTGCTTCATCTTGGCATGGGCTTCTCAACAGTCCTCTAATGTAA ATGGATCATTCAAGCGGCCAACAAGAAGCTCAAGCCCGACCACTGGAGGACATGGTGGGCGTGATTTCATGTCCAAAAGTGCAGCAAGAAAACAGGAAGCCAATGAGGCCACAGCCAGAGCAAGTCCTGAGATGCCCAAGATGTGATTCTACCAACACCAAGTTCTGCTACTACAATAACTACAGTCTCTCCCAGCCAAGGTACTTTTGCAAGTCCTGTAGAAGGTATTGGACTAAAGGGGGAACTCTAAGAAATGTTCCTGTGGGTGGCTCTTGCAGGAAGAACAAAAGACCTTCACCTTCTACTTCATCTTCTTCCTCTCCATCTCCATCTTCAAAGAGATCACATGATCAGGTCGCCAATTCTAGCTATGCTAAGCTTCTAAATCAATCAAATGGAAGCATGGGTCTTTTTGATACCCACAGCAACTATCATAATATGTACAGTGGATTTGGTAATGGAAGCTCTGGGGAGGTTGAACATGGGTCTACAGAGACTGCTACAGCAATGAAGCAAGAGTTGCTACCCAATGGAGATCAAAATATGGTTTGTTGGGGATTTCCATGGCAGTTCAACAATGGGGATGGAAATTACATGGGTGATCTTGATTCTGGAAGAGAAAGCTGGAGTTTCAATGGAAATGGAATTGCTTCATCTTGGCATGGGCTTCTCAACAGTCCTCTAATGTAA MDHSSGQQEAQARPLEDMVGVISCPKVQQENRKPMRPQPEQVLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGSCRKNKRPSPSTSSSSSPSPSSKRSHDQVANSSYAKLLNQSNGSMGLFDTHSNYHNMYSGFGNGSSGEVEHGSTETATAMKQELLPNGDQNMVCWGFPWQFNNGDGNYMGDLDSGRESWSFNGNGIASSWHGLLNSPLM
BLAST of Carg20243 vs. NCBI nr
Match: XP_022946981.1 (dof zinc finger protein DOF3.2-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 427.9 bits (1099), Expect = 2.1e-116 Identity = 224/229 (97.82%), Postives = 224/229 (97.82%), Query Frame = 0
BLAST of Carg20243 vs. NCBI nr
Match: XP_023532294.1 (dof zinc finger protein DOF3.2-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 419.9 bits (1078), Expect = 5.7e-114 Identity = 219/229 (95.63%), Postives = 225/229 (98.25%), Query Frame = 0
BLAST of Carg20243 vs. NCBI nr
Match: XP_023007417.1 (dof zinc finger protein DOF2.1-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 416.8 bits (1070), Expect = 4.9e-113 Identity = 218/229 (95.20%), Postives = 222/229 (96.94%), Query Frame = 0
BLAST of Carg20243 vs. NCBI nr
Match: XP_022946980.1 (dof zinc finger protein DOF3.2-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 413.3 bits (1061), Expect = 5.4e-112 Identity = 217/222 (97.75%), Postives = 217/222 (97.75%), Query Frame = 0
BLAST of Carg20243 vs. NCBI nr
Match: XP_023532292.1 (dof zinc finger protein DOF3.2-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 405.2 bits (1040), Expect = 1.5e-109 Identity = 212/222 (95.50%), Postives = 218/222 (98.20%), Query Frame = 0
BLAST of Carg20243 vs. TAIR10
Match: AT5G60200.1 (TARGET OF MONOPTEROS 6) HSP 1 Score: 144.8 bits (364), Expect = 6.5e-35 Identity = 93/220 (42.27%), Postives = 103/220 (46.82%), Query Frame = 0
BLAST of Carg20243 vs. TAIR10
Match: AT3G45610.1 (Dof-type zinc finger DNA-binding family protein) HSP 1 Score: 135.6 bits (340), Expect = 3.9e-32 Identity = 99/248 (39.92%), Postives = 122/248 (49.19%), Query Frame = 0
BLAST of Carg20243 vs. TAIR10
Match: AT4G24060.1 (Dof-type zinc finger DNA-binding family protein) HSP 1 Score: 118.2 bits (295), Expect = 6.5e-27 Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 0
BLAST of Carg20243 vs. TAIR10
Match: AT3G61850.4 (Dof-type zinc finger DNA-binding family protein) HSP 1 Score: 113.6 bits (283), Expect = 1.6e-25 Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of Carg20243 vs. TAIR10
Match: AT3G55370.3 (OBF-binding protein 3) HSP 1 Score: 112.8 bits (281), Expect = 2.7e-25 Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0
BLAST of Carg20243 vs. Swiss-Prot
Match: sp|Q84TE9|DOF53_ARATH (Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana OX=3702 GN=DOF5.3 PE=2 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.2e-33 Identity = 93/220 (42.27%), Postives = 103/220 (46.82%), Query Frame = 0
BLAST of Carg20243 vs. Swiss-Prot
Match: sp|Q9M1E6|DOF32_ARATH (Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana OX=3702 GN=DOF3.2 PE=1 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 7.1e-31 Identity = 99/248 (39.92%), Postives = 122/248 (49.19%), Query Frame = 0
BLAST of Carg20243 vs. Swiss-Prot
Match: sp|O24463|PBF_MAIZE (Dof zinc finger protein PBF OS=Zea mays OX=4577 GN=PBF PE=1 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27 Identity = 61/112 (54.46%), Postives = 72/112 (64.29%), Query Frame = 0
BLAST of Carg20243 vs. Swiss-Prot
Match: sp|Q8LAP8|DOF46_ARATH (Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana OX=3702 GN=DOF4.6 PE=2 SV=2) HSP 1 Score: 118.2 bits (295), Expect = 1.2e-25 Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 0
BLAST of Carg20243 vs. Swiss-Prot
Match: sp|Q6Z345|DOF4_ORYSJ (Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.3e-24 Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0
BLAST of Carg20243 vs. TrEMBL
Match: tr|A0A1S3CKB6|A0A1S3CKB6_CUCME (LOW QUALITY PROTEIN: dof zinc finger protein DOF5.3-like OS=Cucumis melo OX=3656 GN=LOC103501912 PE=4 SV=1) HSP 1 Score: 328.6 bits (841), Expect = 1.1e-86 Identity = 194/269 (72.12%), Postives = 211/269 (78.44%), Query Frame = 0
BLAST of Carg20243 vs. TrEMBL
Match: tr|A0A0A0KHN1|A0A0A0KHN1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G289740 PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 2.6e-86 Identity = 192/269 (71.38%), Postives = 209/269 (77.70%), Query Frame = 0
BLAST of Carg20243 vs. TrEMBL
Match: tr|A0A2N9FRI5|A0A2N9FRI5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17715 PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51 Identity = 137/291 (47.08%), Postives = 160/291 (54.98%), Query Frame = 0
BLAST of Carg20243 vs. TrEMBL
Match: tr|A0A1Q3BTQ1|A0A1Q3BTQ1_CEPFO (Zf-Dof domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_14850 PE=4 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 5.6e-49 Identity = 140/306 (45.75%), Postives = 159/306 (51.96%), Query Frame = 0
BLAST of Carg20243 vs. TrEMBL
Match: tr|I1LR01|I1LR01_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100799737 PE=4 SV=2) HSP 1 Score: 203.0 bits (515), Expect = 7.3e-49 Identity = 151/317 (47.63%), Postives = 175/317 (55.21%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |