Carg20237 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20237
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RBR-type E3 ubiquitin transferase
Location	Cucurbita_argyrosperma_scaffold_131 : 35936 .. 38135 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATGGGACAGTAATCCTTGATTCCGGCCTAGATGACGATGAACTCGCCTATGACCTCCAGTTGAAAGAAGTCATTGCCCTTTCACAGACCCAGTTTTCTCCCCCTACTTCCTACTCTCCTCCACCATCGGCTTCATCCCGATCGTCGCCCTTTCTCGACGACGATAACGAGATGCGCTATGCGACTAACCTATGGACGTATCTGACCTCCGATGACGACGGGATGGGATACGATTATCGGATGCCCTCTGATACGGACGTATCTGCTCTCCTCGATCCTTTATTTGATTCTGAAAGTTACAGATTGTATTTCAAGGGTTTGGTCGGCAAAGAGACCGCCGGAGACGTAACGATCATTGCGGTGGCTGTTTTCGATTCGAGAGACGATTTATTGATACATGTGAGGAAGCCATTGGAAGCTGCTCGAGAAAACGAGGCCGTCAGTCCCGAGGTTGCTGAGCTTATGGCCTTAATCAAAGGGCTTGAGGCGGCTCTTTCCCTTCACTTGGAACGAGTTTCCTTCTTCTGCGATGACTATATGCTTCACCAATATGTGAGTTAGCGTACATTTCGAGCAAACATTATGAAATATTTGATTCTGCCGTTTCATGTTCTTGTTCGTTTTGCTGTAGATGTTAATTCTGTTCTTGTTCACTGTTGGATTGTTCCAATCCCTGATTGTGTTCATTGTTAGATTTCGTAGCATAAACATTATAATATTTTATTCTTCCCTTTCATGTTGGTGTTCATTTGGCTGTAGACGTTAATTCTGTTCTTGTTCACTGTTGGATTGTTCCAATCCCTGATTGTGTTCATTGTTAAATTTCATAGCATAAACATTATGGAATATTTGGTTCTGCCGTTTCATGTTCTTGTTCATTTTGCTGTAGATGTTAATTCTGTTCTTGTTCATTGCTGGATTGTTCCAAGCCCTGATTGTGTTCATTGTTAGATTTGGTAGCATAAACATTTAGTGCTATGAGTGATTGATTACCGAATGCAGGTTACAGGCAGATTACGGCCAAAACTGAGCAAGATTGCAAGTTTAGTCGAAAAAGTAGCTTTTCTACGAGTGCAATTCTCTTATTGTGAACCCTTTTTGGTAGAACAAAATGTCATGAAGAGTGCCTTTAAATTAGTAGAACAAGCCACAGCTTCTCAGATCACCTTGCCTGATGCAGAAACTAGCAATACCCATGACTTGCTAGAGAACTGCGAGATTTGCTATGTAGATAACGAATTGGATCAGATGTATACTGTTAATGACTGCCTTCATAGATACTGCTTCTCTTGCATGAAAAAGCATGTGGAAGTGAAGTTTCTTGATGGATCTGAGGCAAAATGTCCTCATGAAGGCTGTAAATCGACAGTGGGTATTGAGAATTTTGAAAAACTTTTCCCCCCAAAAGTAATTGAAATCATTCATCAACGCTTCAAAGAATCTTCCATCCCTTTTTCAGAGAAAGTTTATTGCCCACAACCCAGATGCTCTGCTTTGATGTCGAAGACTGAAGTTTTGGATTATACAAAAGACATTCTTGGAAATGCAGAGCAATCTGGAGCTAGGAAGTGCATGAAATGCCATGGACTTTTTTGCATCAAATGCAAAGCCACTTGGCACAACGACATGACGTGTGAGGAGTACAGGAAGTCAAGCCATGGCACTCAAACGGAAGACGCAAAGCTGAATTCTCTGGCCAAGGAGAAGCTCTGGCAGCCATGTCTGAGATGTGGCCATTTGGTTGAGCTTGCAGAAGGATGCTTCCACATCGTTTGCAGGTTTGCTTTCTTCTTTCTCCTCTTGCATTTCTTTTGCTTGCAGAAGGAAGTTACCTCATTATTTGCTGATGTTCTTCAGATGTGGACATGAATTCTGCTATTCCTGTGGAGCTGAGTGGAAGAACAGGCAGCCAACATGTTTGTGTCCGATGTGGGATGAACATCTTATCTTAAATGATGAACAGTAATGGATGAATGTTGGGGAGATTGCTTGAAGAATTCAGGGCGGATTATAGGTTTCTCTCTAATCTTAGTCATCATCATATCTTTTTACTATTAATTACAACATTGATTGGCTGTGCTAAGCTTAATAATTACATTCTTATAAGGCAATAATCTTGAACTATGCAGGTAAATTAAGTCGTTTTTGTAACTCGCCCAAACTCATTCTTAATCGATATTGTCAGTTTTGGCTT

mRNA sequence

ATGGTGGATGGGACAGTAATCCTTGATTCCGGCCTAGATGACGATGAACTCGCCTATGACCTCCAGTTGAAAGAAGTCATTGCCCTTTCACAGACCCAGTTTTCTCCCCCTACTTCCTACTCTCCTCCACCATCGGCTTCATCCCGATCGTCGCCCTTTCTCGACGACGATAACGAGATGCGCTATGCGACTAACCTATGGACGTATCTGACCTCCGATGACGACGGGATGGGATACGATTATCGGATGCCCTCTGATACGGACGTATCTGCTCTCCTCGATCCTTTATTTGATTCTGAAAGTTACAGATTGTATTTCAAGGGTTTGGTCGGCAAAGAGACCGCCGGAGACGTAACGATCATTGCGGTGGCTGTTTTCGATTCGAGAGACGATTTATTGATACATGTGAGGAAGCCATTGGAAGCTGCTCGAGAAAACGAGGCCGTCAGTCCCGAGGTTGCTGAGCTTATGGCCTTAATCAAAGGGCTTGAGGCGGCTCTTTCCCTTCACTTGGAACGAGTTTCCTTCTTCTGCGATGACTATATGCTTCACCAATATGTTACAGGCAGATTACGGCCAAAACTGAGCAAGATTGCAAGTTTAGTCGAAAAAGTAGCTTTTCTACGAGTGCAATTCTCTTATTGTGAACCCTTTTTGGTAGAACAAAATGTCATGAAGAGTGCCTTTAAATTAGTAGAACAAGCCACAGCTTCTCAGATCACCTTGCCTGATGCAGAAACTAGCAATACCCATGACTTGCTAGAGAACTGCGAGATTTGCTATGTAGATAACGAATTGGATCAGATGTATACTGTTAATGACTGCCTTCATAGATACTGCTTCTCTTGCATGAAAAAGCATGTGGAAGTGAAGTTTCTTGATGGATCTGAGGCAAAATGTCCTCATGAAGGCTGTAAATCGACAGTGGGTATTGAGAATTTTGAAAAACTTTTCCCCCCAAAAGTAATTGAAATCATTCATCAACGCTTCAAAGAATCTTCCATCCCTTTTTCAGAGAAAGTTTATTGCCCACAACCCAGATGCTCTGCTTTGATGTCGAAGACTGAAGTTTTGGATTATACAAAAGACATTCTTGGAAATGCAGAGCAATCTGGAGCTAGGAAGTGCATGAAATGCCATGGACTTTTTTGCATCAAATGCAAAGCCACTTGGCACAACGACATGACGTGTGAGGAGTACAGGAAGTCAAGCCATGGCACTCAAACGGAAGACGCAAAGCTGAATTCTCTGGCCAAGGAGAAGCTCTGGCAGCCATGTCTGAGATGTGGCCATTTGGTTGAGCTTGCAGAAGGATGCTTCCACATCGTTTGCAGATGTGGACATGAATTCTGCTATTCCTGTGGAGCTGAGTGGAAGAACAGGCAGCCAACATGTTTGTGTCCGATGTGGGATGAACATCTTATCTTAAATGATGAACAGTAATGGATGAATGTTGGGGAGATTGCTTGAAGAATTCAGGGCGGATTATAGGTTTCTCTCTAATCTTAGTCATCATCATATCTTTTTACTATTAATTACAACATTGATTGGCTGTGCTAAGCTTAATAATTACATTCTTATAAGGCAATAATCTTGAACTATGCAGGTAAATTAAGTCGTTTTTGTAACTCGCCCAAACTCATTCTTAATCGATATTGTCAGTTTTGGCTT

Coding sequence (CDS)

ATGGTGGATGGGACAGTAATCCTTGATTCCGGCCTAGATGACGATGAACTCGCCTATGACCTCCAGTTGAAAGAAGTCATTGCCCTTTCACAGACCCAGTTTTCTCCCCCTACTTCCTACTCTCCTCCACCATCGGCTTCATCCCGATCGTCGCCCTTTCTCGACGACGATAACGAGATGCGCTATGCGACTAACCTATGGACGTATCTGACCTCCGATGACGACGGGATGGGATACGATTATCGGATGCCCTCTGATACGGACGTATCTGCTCTCCTCGATCCTTTATTTGATTCTGAAAGTTACAGATTGTATTTCAAGGGTTTGGTCGGCAAAGAGACCGCCGGAGACGTAACGATCATTGCGGTGGCTGTTTTCGATTCGAGAGACGATTTATTGATACATGTGAGGAAGCCATTGGAAGCTGCTCGAGAAAACGAGGCCGTCAGTCCCGAGGTTGCTGAGCTTATGGCCTTAATCAAAGGGCTTGAGGCGGCTCTTTCCCTTCACTTGGAACGAGTTTCCTTCTTCTGCGATGACTATATGCTTCACCAATATGTTACAGGCAGATTACGGCCAAAACTGAGCAAGATTGCAAGTTTAGTCGAAAAAGTAGCTTTTCTACGAGTGCAATTCTCTTATTGTGAACCCTTTTTGGTAGAACAAAATGTCATGAAGAGTGCCTTTAAATTAGTAGAACAAGCCACAGCTTCTCAGATCACCTTGCCTGATGCAGAAACTAGCAATACCCATGACTTGCTAGAGAACTGCGAGATTTGCTATGTAGATAACGAATTGGATCAGATGTATACTGTTAATGACTGCCTTCATAGATACTGCTTCTCTTGCATGAAAAAGCATGTGGAAGTGAAGTTTCTTGATGGATCTGAGGCAAAATGTCCTCATGAAGGCTGTAAATCGACAGTGGGTATTGAGAATTTTGAAAAACTTTTCCCCCCAAAAGTAATTGAAATCATTCATCAACGCTTCAAAGAATCTTCCATCCCTTTTTCAGAGAAAGTTTATTGCCCACAACCCAGATGCTCTGCTTTGATGTCGAAGACTGAAGTTTTGGATTATACAAAAGACATTCTTGGAAATGCAGAGCAATCTGGAGCTAGGAAGTGCATGAAATGCCATGGACTTTTTTGCATCAAATGCAAAGCCACTTGGCACAACGACATGACGTGTGAGGAGTACAGGAAGTCAAGCCATGGCACTCAAACGGAAGACGCAAAGCTGAATTCTCTGGCCAAGGAGAAGCTCTGGCAGCCATGTCTGAGATGTGGCCATTTGGTTGAGCTTGCAGAAGGATGCTTCCACATCGTTTGCAGATGTGGACATGAATTCTGCTATTCCTGTGGAGCTGAGTGGAAGAACAGGCAGCCAACATGTTTGTGTCCGATGTGGGATGAACATCTTATCTTAAATGATGAACAGTAA

Protein sequence

MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPTSYSPPPSASSRSSPFLDDDNEMRYATNLWTYLTSDDDGMGYDYRMPSDTDVSALLDPLFDSESYRLYFKGLVGKETAGDVTIIAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAELMALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFSYCEPFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIPFSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGAEWKNRQPTCLCPMWDEHLILNDEQ

Homology

[Close]

BLAST of Carg20237 vs. NCBI nr
Match: XP_022947938.1 (probable E3 ubiquitin-protein ligase ARI9 [Cucurbita moschata])

HSP 1 Score: 965.3 bits (2494), Expect = 7.7e-278
Identity = 475/480 (98.96%), Postives = 477/480 (99.38%), Query Frame = 0


Query: 1   MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM 60
           MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM
Sbjct: 1   MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM 60

Query: 61  RYATNLWTYLTSDDDGMGYDYRMPSDTDVSALLDPLFDSESYRLYFKGLVGKETAGDVTI 120
           RYATNLWTYLTSDDDGMGYDYRMPSDTDVSALLDPLFDSESYRLYFKGLVGKETAGDVTI
Sbjct: 61  RYATNLWTYLTSDDDGMGYDYRMPSDTDVSALLDPLFDSESYRLYFKGLVGKETAGDVTI 120

Query: 121 IAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAELMALIKGLEAALSLHLERVSFFCDD 180
           IAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAELMALIKGLEAALSLHLERVSFFCDD
Sbjct: 121 IAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAELMALIKGLEAALSLHLERVSFFCDD 180

Query: 181 YMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFSYCEPFLVEQNVMKSAFKLVEQATASQI 240
           Y+LHQYVTGRLRPKLSKIASLVEKVAFLR+QFSYCEPFLVEQNVMKSAFKLVEQATASQI
Sbjct: 181 YILHQYVTGRLRPKLSKIASLVEKVAFLRMQFSYCEPFLVEQNVMKSAFKLVEQATASQI 240

Query: 241 TLPDAETSNTHDLLENCEICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLDGSEAKC 300
           TLPDAETSNTH LLENCEICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLDGSEAKC
Sbjct: 241 TLPDAETSNTHHLLENCEICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLDGSEAKC 300

Query: 301 PHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIPFSEKVYCPQPRCSALMSKTEVLDY 360
           PHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIPFSEKVYCPQPRCSALMSKTEVLDY
Sbjct: 301 PHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIPFSEKVYCPQPRCSALMSKTEVLDY 360

Query: 361 TKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKE 420
           TKDILGNAEQSGARKCMKC G FCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKE
Sbjct: 361 TKDILGNAEQSGARKCMKCQGFFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKE 420

Query: 421 KLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGAEWKNRQPTCLCPMWDEHLILNDEQ 480
           KLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGAEWKNRQPTCLCPMWDEHLILNDEQ
Sbjct: 421 KLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGAEWKNRQPTCLCPMWDEHLILNDEQ 480

[Close]

BLAST of Carg20237 vs. NCBI nr
Match: XP_023007395.1 (probable E3 ubiquitin-protein ligase ARI9 [Cucurbita maxima])

HSP 1 Score: 961.1 bits (2483), Expect = 1.4e-276
Identity = 473/480 (98.54%), Postives = 476/480 (99.17%), Query Frame = 0


Query: 1   MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM 60
           MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM
Sbjct: 1   MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM 60

Query: 61  RYATNLWTYLTSDDDGMGYDYRMPSDTDVSALLDPLFDSESYRLYFKGLVGKETAGDVTI 120
           RYATNLWTYLTSDDD MGYDYRMPSDTDVSALLDPLFDSESYRLYFKGLVGKETAGDVTI
Sbjct: 61  RYATNLWTYLTSDDDRMGYDYRMPSDTDVSALLDPLFDSESYRLYFKGLVGKETAGDVTI 120

Query: 121 IAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAELMALIKGLEAALSLHLERVSFFCDD 180
           IAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAELMALI+GLEAA SLHLERVSFFCDD
Sbjct: 121 IAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAELMALIEGLEAARSLHLERVSFFCDD 180

Query: 181 YMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFSYCEPFLVEQNVMKSAFKLVEQATASQI 240
           YMLHQYVTGRLRPKLSKIASLVEKVAFLR+QFSYCEPFLVEQNVMKSAFKLVEQATASQI
Sbjct: 181 YMLHQYVTGRLRPKLSKIASLVEKVAFLRMQFSYCEPFLVEQNVMKSAFKLVEQATASQI 240

Query: 241 TLPDAETSNTHDLLENCEICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLDGSEAKC 300
           TLPDAETSNTH LLENC+ICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLDGSEAKC
Sbjct: 241 TLPDAETSNTHHLLENCKICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLDGSEAKC 300

Query: 301 PHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIPFSEKVYCPQPRCSALMSKTEVLDY 360
           PHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIPFSEKVYCPQPRCSALMSKTEVLDY
Sbjct: 301 PHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIPFSEKVYCPQPRCSALMSKTEVLDY 360

Query: 361 TKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKE 420
           TKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGT TEDAKLNSLAKE
Sbjct: 361 TKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTHTEDAKLNSLAKE 420

Query: 421 KLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGAEWKNRQPTCLCPMWDEHLILNDEQ 480
           KLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGAEWKNRQPTCLCPMWDEHLILNDEQ
Sbjct: 421 KLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGAEWKNRQPTCLCPMWDEHLILNDEQ 480

[Close]

BLAST of Carg20237 vs. NCBI nr
Match: XP_023532221.1 (ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 952.6 bits (2461), Expect = 5.1e-274
Identity = 471/480 (98.12%), Postives = 476/480 (99.17%), Query Frame = 0


Query: 1   MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM 60
           MVDG+VILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM
Sbjct: 1   MVDGSVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM 60

Query: 61  RYATNLWTYLTSDDDGMGYDYRMPSDTDVSALLDPLFDSESYRLYFKGLVGKETAGDVTI 120
           RYATNLWTYLTSDDDGMGYDYRMPSDTDVSALLDPLFDSESYRLYFKGLVGKETAGDVTI
Sbjct: 61  RYATNLWTYLTSDDDGMGYDYRMPSDTDVSALLDPLFDSESYRLYFKGLVGKETAGDVTI 120

Query: 121 IAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAELMALIKGLEAALSLHLERVSFFCDD 180
           IAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAELMALIKGLEAALSLHLERVSFFCDD
Sbjct: 121 IAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAELMALIKGLEAALSLHLERVSFFCDD 180

Query: 181 YMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFSYCEPFLVEQNVMKSAFKLVEQATASQI 240
           YMLHQYVTGRLRPKLSKIASLVEKVAFLR+QFSYCEPFLVEQNVMKSAFKLVEQATASQI
Sbjct: 181 YMLHQYVTGRLRPKLSKIASLVEKVAFLRMQFSYCEPFLVEQNVMKSAFKLVEQATASQI 240

Query: 241 TLPDAETSNTHDLLENCEICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLDGSEAKC 300
              +AETSNT +LLENC+ICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLDGSEAKC
Sbjct: 241 ---NAETSNTQNLLENCKICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLDGSEAKC 300

Query: 301 PHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIPFSEKVYCPQPRCSALMSKTEVLDY 360
           PHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIPFSEKVYCPQPRCSALMSKTEVLDY
Sbjct: 301 PHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIPFSEKVYCPQPRCSALMSKTEVLDY 360

Query: 361 TKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKE 420
           TKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKE
Sbjct: 361 TKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKE 420

Query: 421 KLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGAEWKNRQPTCLCPMWDEHLILNDEQ 480
           KLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGAEWKNRQPTCLCPMWDEHLILNDEQ
Sbjct: 421 KLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGAEWKNRQPTCLCPMWDEHLILNDEQ 477

[Close]

BLAST of Carg20237 vs. NCBI nr
Match: XP_008463910.1 (PREDICTED: E3 ubiquitin-protein ligase dbl4-like [Cucumis melo])

HSP 1 Score: 595.9 bits (1535), Expect = 1.2e-166
Identity = 302/503 (60.04%), Postives = 361/503 (71.77%), Query Frame = 0


Query: 1   MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM 60
           M  G   +DS LDDDELAYDLQ++EVIA S   F P       XXXX     F DDD+E 
Sbjct: 1   MASGATNIDSDLDDDELAYDLQMEEVIAAS-LNFLPSTSHSPPXXXXXXXXXFPDDDSEN 60

Query: 61  RYATNLWT----------------------YLTSDDDGMGYDYRMPSDTDVSA--LLDPL 120
             A  L                           SDD+  GYD+ M   T +SA  L +PL
Sbjct: 61  HDAIMLLDDDASVGDDGLEHRLNDLVAEDFINVSDDEWGGYDW-MSYRTSMSALKLCNPL 120

Query: 121 FDSESYRLYFKGLVGKETAGDVTIIAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAEL 180
           FD +S RLYFKGLV +E+  D T+  VAVFD R++L++ V++PLE  RE  A+SP VAEL
Sbjct: 121 FDPDSSRLYFKGLVNEESVRDETVTVVAVFDPRENLMMEVKRPLETVRERGAISPVVAEL 180

Query: 181 MALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFSYCE 240
           MALI+GLEAAL   L+RVSFFCDD  L++Y+TGRLRPKL ++  LV++V  LR  FSYCE
Sbjct: 181 MALIEGLEAALVFPLKRVSFFCDDRALYRYITGRLRPKLREVERLVDQVGLLRGYFSYCE 240

Query: 241 PFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQMYTVNDCL 300
           PFLVE N +K AF L           P  ET ++   +ENC+ICY D ELDQM+T++ CL
Sbjct: 241 PFLVEPNDVKYAFSLAN-------GFPAIETGDSRKFVENCKICYEDRELDQMFTIDGCL 300

Query: 301 HRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIP 360
           HRYCFSCM+KHVEVKFL GS AKCPHEGC+S V +E+ +KL PP VIEII QR KESSIP
Sbjct: 301 HRYCFSCMRKHVEVKFLGGSVAKCPHEGCESIVRVESCDKLLPPNVIEIIQQRLKESSIP 360

Query: 361 FSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMT 420
           FS+KVYCPQPRCSALMSKTEVL+YTK+I  NA+QSG RKC+KCH LFCIKCKA+WH +MT
Sbjct: 361 FSDKVYCPQPRCSALMSKTEVLEYTKEIYKNAKQSGTRKCVKCHQLFCIKCKASWHVNMT 420

Query: 421 CEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGA 480
           CE Y+KSSH TQT DAKL  LA+EKLW+ C RC HLVEL+EGC+HI+CRCG+EFCY+CGA
Sbjct: 421 CEAYKKSSHNTQTADAKLKILAREKLWRTCARCSHLVELSEGCYHIICRCGYEFCYTCGA 480

[Close]

BLAST of Carg20237 vs. NCBI nr
Match: XP_004149564.1 (PREDICTED: uncharacterized protein LOC101217459 [Cucumis sativus] >KGN47300.1 hypothetical protein Csa_6G290810 [Cucumis sativus])

HSP 1 Score: 591.7 bits (1524), Expect = 2.3e-165
Identity = 302/503 (60.04%), Postives = 358/503 (71.17%), Query Frame = 0


Query: 1   MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM 60
           M  G   +DS L+DDELAYDLQ++EVIA S     P      XXXXX       DDD+E 
Sbjct: 1   MASGATNIDSDLNDDELAYDLQMEEVIAAS-LNLLPSTSHSPXXXXXXXXXXXPDDDSEN 60

Query: 61  RYATNLWT----------------------YLTSDDDGMGYDYRMPSDTDVSA--LLDPL 120
             A  L                           SDD+  GYD+ M   T VSA  L +PL
Sbjct: 61  HDAVMLSDDDASVGDDGLDHRLNDLVAGDFINVSDDEWGGYDW-MSYRTSVSALKLCNPL 120

Query: 121 FDSESYRLYFKGLVGKETAGDVTIIAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAEL 180
           FD E  RLYFKGLV +++  D T+  VAVFD R++LL+ V+ PLE  RE  A++P VAEL
Sbjct: 121 FDPEGSRLYFKGLVNEDSVRDETVTVVAVFDPRENLLMEVKSPLETVRERMAINPVVAEL 180

Query: 181 MALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFSYCE 240
           MALI+GLEAAL   L RVSFFCDD  L++Y+TGRLRPKL ++  LV++V  LR  FSYCE
Sbjct: 181 MALIEGLEAALVFPLRRVSFFCDDRALYRYITGRLRPKLKEVERLVDQVGLLRGYFSYCE 240

Query: 241 PFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQMYTVNDCL 300
           PFLVE+N +K AF+L           P  ET ++   +ENC+ICY D ELDQM+T++DCL
Sbjct: 241 PFLVERNDVKYAFRLAN-------CYPAIETKDSRKFVENCKICYEDRELDQMFTIDDCL 300

Query: 301 HRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIP 360
           HRYCFSC +KHVEVKFL GS AKCPHEGC+S V +E+ +KL PP VIEII QR KESSIP
Sbjct: 301 HRYCFSCTRKHVEVKFLGGSVAKCPHEGCESVVKVESCDKLLPPNVIEIIQQRLKESSIP 360

Query: 361 FSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMT 420
           FS+KVYCPQPRCSALMSKTEVL+YTKDI  NAE SG RKC+KCH LFCIKCK++WH +MT
Sbjct: 361 FSDKVYCPQPRCSALMSKTEVLEYTKDIHENAEHSGTRKCVKCHQLFCIKCKSSWHVNMT 420

Query: 421 CEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGA 480
           CE Y+KS H TQTEDAKL  LA+EKLW+PC RC HLVEL+EGC+HI+CRCGHEFCYSCGA
Sbjct: 421 CEVYKKSIHNTQTEDAKLKILAREKLWRPCARCSHLVELSEGCYHIICRCGHEFCYSCGA 480

[Close]

BLAST of Carg20237 vs. TAIR10
Match: AT5G60250.1 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 351.7 bits (901), Expect = 7.3e-97
Identity = 169/385 (43.90%), Postives = 240/385 (62.34%), Query Frame = 0


Query: 102 YRLYFKGLVGKETA-GDVTII----AVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAEL 161
           YRLYFKGLV  E   G +T +     VA+ D RD+LL  ++ PL     +  +S + AEL
Sbjct: 145 YRLYFKGLVSDENGKGKMTDVVSGFGVAICDQRDNLLFEMKGPL----IDNGMSRQGAEL 204

Query: 162 MALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFSYCE 221
            ALI+GL  AL L ++ + FFCD Y + QYVTG+   K  KI+ L++ +  +   FS  +
Sbjct: 205 KALIRGLTEALKLGIKHIVFFCDSYPIFQYVTGKWMAKQKKISLLLDDLQSIMQHFSSYQ 264

Query: 222 PFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQMYTVNDCL 281
             LV +N +K A+KL  ++  S +T  +        L E C IC+ D   + M++V+ C 
Sbjct: 265 HVLVARNDVKFAYKLARESILSMVTPHEDPRQAKAVLKEECAICFNDIVAEGMFSVDKCR 324

Query: 282 HRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIP 341
           HR+CF C+K+HVEVK L G   KCPH+GCKS + I+   KL  PK+ ++  QR +E++IP
Sbjct: 325 HRFCFQCVKQHVEVKLLHGMAPKCPHDGCKSELVIDACGKLLTPKLSKLWQQRLQENAIP 384

Query: 342 FSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMT 401
            +E+VYCP PRCSALMSKT++ +  K +L    +SG R+C++C GLFC+ CK  WH +++
Sbjct: 385 VTERVYCPYPRCSALMSKTKISESAKSLLSLYPKSGVRRCVECRGLFCVDCKVPWHGNLS 444

Query: 402 CEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGA 461
           C EY+K       +D KL SLA  K+W+ C +C H++EL++GC HI CRCGHEFCY+CG 
Sbjct: 445 CTEYKKLHPEPPADDVKLKSLANNKMWRQCGKCQHMIELSQGCNHITCRCGHEFCYNCGG 504

Query: 462 EWKNRQPTCL--CPMWDEHLILNDE 480
            W     TCL  CP W+E  I   +
Sbjct: 505 GWNKIMGTCLNRCPTWNEEYITRQD 525

[Close]

BLAST of Carg20237 vs. TAIR10
Match: AT2G25370.1 (RING/U-box superfamily protein)

HSP 1 Score: 278.1 bits (710), Expect = 1.0e-74
Identity = 145/370 (39.19%), Postives = 214/370 (57.84%), Query Frame = 0


Query: 98  DSESYRLYFKGLVGKETAGDVTIIA------VAVFDSRDDLLIHVRKPLEAARENEAVSP 157
           D+  YRL FKGLV  E   D    A      VA+ D +D+LL  ++   E+ R+ E +S 
Sbjct: 150 DNVVYRLCFKGLVNYEAVADDVEKAVKAGFGVAICDEKDNLLHEIK---ESLRDIE-ISR 209

Query: 158 EVAELMALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQ 217
              E+MAL++GL  +  L +  V  +CDD  ++Q + GR + K  KI  LVE+V  +  +
Sbjct: 210 RGVEIMALVRGLSESFDLGMRNVVIYCDDDWIYQSIIGRGKSK-KKIDHLVEEVQGILEK 269

Query: 218 FSYCEPFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQMYT 277
            +  +  LV +N +K AF+L  +A        +AE        E C I + + +++ M+ 
Sbjct: 270 MACIDAVLVARNDVKFAFRLAREAIGRNSVDVNAEQG------ETCGIFFEETDVEHMFV 329

Query: 278 VNDCLHRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFK 337
              CLHR+CF C+K+HV+VK   G+E  C   GCK  + +E   K+   K+IE+  Q+ K
Sbjct: 330 TEKCLHRHCFPCVKQHVKVKLRSGTEPTCLEYGCKFKLTLERCSKVLTLKLIEMWKQKMK 389

Query: 338 ESSIPFSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATW 397
           E SIP +E++YCP P CS LMSKTE       +   A+ S  R C+KC GLFCI CK   
Sbjct: 390 EDSIPAAERIYCPYPNCSMLMSKTE-------LSSEADLSNVRTCVKCCGLFCIDCKVPS 449

Query: 398 HNDMTCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFC 457
           H D++ ++Y+K       +D KL SLA +K+W+ C++C H++EL+ GC H+ CRCG+EFC
Sbjct: 450 HTDLSYDDYKKLHPDPLVDDLKLKSLANDKMWRQCVKCRHMIELSHGCNHMTCRCGYEFC 501

Query: 458 YSCGAEWKNR 462
           Y CG EW+ R
Sbjct: 510 YECGIEWQKR 501

[Close]

BLAST of Carg20237 vs. TAIR10
Match: AT2G25360.1 (RING/U-box superfamily protein)

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-70
Identity = 126/310 (40.65%), Postives = 187/310 (60.32%), Query Frame = 0


Query: 157 MALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFSYCE 216
           MALI+GL  +  L + +V  +CDD +L+QY+ GR + K  K+  LV++   L  + +Y +
Sbjct: 1   MALIRGLRESFDLGIRQVVVYCDDQLLYQYIVGRGKIK-KKVVHLVDEFQLLLEEMTYTD 60

Query: 217 PFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQM-YTVNDC 276
             L+  N +  AFKL  +A  S+  +            E C IC+ + E ++M +T   C
Sbjct: 61  ADLIALNDVNFAFKLAREAIVSRDDVK----------AEICSICFEETEGERMFFTTEKC 120

Query: 277 LHRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSI 336
           +HR+CF C+K++VEVK L G+   C  +GCK  + +E+  K+   ++IE+  Q+ KE SI
Sbjct: 121 VHRHCFPCVKQYVEVKLLSGTVPTCLDDGCKFKLTLESCSKVLTLELIEMWKQKMKEDSI 180

Query: 337 PFSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDM 396
           P +E++YCP P CS LMSKTE       +   ++ S  R C+KC GLFCI CK   H+D+
Sbjct: 181 PAAERIYCPYPNCSMLMSKTE-------LSSESDLSNDRSCVKCCGLFCIDCKVPSHSDL 240

Query: 397 TCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCG 456
           +C EY+K  H    ++ KL SLAK+K W+ C  C H++EL+  C H+ CRCG++FCY C 
Sbjct: 241 SCAEYKKLHHDPLVDELKLKSLAKDKKWRQCKMCRHMIELSHACNHMTCRCGYQFCYQCE 292

Query: 457 AEWKNRQPTC 466
            EWKN Q TC
Sbjct: 301 VEWKNDQKTC 292

[Close]

BLAST of Carg20237 vs. TAIR10
Match: AT3G45580.1 (RING/U-box protein with C6HC-type zinc finger)

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-70
Identity = 135/369 (36.59%), Postives = 210/369 (56.91%), Query Frame = 0


Query: 100 ESYRLYFKGLVGKETAGDVTIIAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAELMAL 159
           +SYRLYFKGLV +ET   +    VA+ D  D+LL  +++ +  +R    V+    E+MAL
Sbjct: 26  DSYRLYFKGLVSEETVELLAGFGVAICDKDDNLLFQMKEQVHDSR----VTVLEVEIMAL 85

Query: 160 IKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFSYCEPFL 219
            +GL  A+ L ++ +S + D Y + + V  +        A L++ V  +R + +   P L
Sbjct: 86  KRGLTEAVGLGIDNISIYSDHYRIFELVMEKSASAEENFALLMDNVQHIRQRLTSSFPVL 145

Query: 220 VEQNVMKSAFKLVEQATASQIT--LPDAETSNTHDLLENCEICYVDN-ELDQMYTVNDCL 279
           V +N +K  ++L  +   S+I+  +PD      HD  + C IC  DN E + M++V  C 
Sbjct: 146 VTRNQIKFVYELAMETIVSEISIHIPD------HD--KTCSICSDDNFEPELMFSVALCG 205

Query: 280 HRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIP 339
           H +C  C+K+H+EV+ L G   +C H  C+S + + N   L   K+  +   R +E SIP
Sbjct: 206 HEFCVECVKRHIEVRLLAGGVPRCLHYQCESKLTLANCANLLTSKLKAMWELRIEEESIP 265

Query: 340 FSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMT 399
             E+VYCP PRCS+LMS T++ + T+      E    R C+KC   FCI CK  WH++++
Sbjct: 266 VEERVYCPNPRCSSLMSVTKLSNSTR------EDVTMRSCVKCGEPFCINCKLPWHSNLS 325

Query: 400 CEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGA 459
           C +Y+        +D KL +LA +K+W+ C  C +++EL+EGC HI CRCGH+FCY CGA
Sbjct: 326 CNDYKSLGPNPTADDIKLKALANQKMWRQCENCKNVIELSEGCMHITCRCGHQFCYKCGA 376

Query: 460 EWKNRQPTC 466
           +W   +  C
Sbjct: 386 KWITGRVFC 376

[Close]

BLAST of Carg20237 vs. TAIR10
Match: AT5G37560.1 (RING/U-box superfamily protein)

HSP 1 Score: 253.4 bits (646), Expect = 2.7e-67
Identity = 138/366 (37.70%), Postives = 198/366 (54.10%), Query Frame = 0


Query: 98  DSESYRLYFKGLVGKETAGDVTII-----AVAVFDSRDDLLIHVRKPLEAARENEAVSPE 157
           D+  Y+LYFKGLV  ETA D   I      VA+ D  D+L   + K L  A     ++ E
Sbjct: 32  DNVVYKLYFKGLVSGETATDKKAIVKVGFGVAICDEADNLFYGMNKSLYEA----VINRE 91

Query: 158 VAELMALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQF 217
            A+++ALI GL  ++   ++ V   CDD  ++Q + GR +P+  K   L+E+V  LR + 
Sbjct: 92  EADILALITGLYESIHRGVKNVVICCDDRQIYQTIIGREKPQ-QKNVHLLEEVQRLRGRL 151

Query: 218 SYCEPFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQMYTV 277
           +     LV       A +L            DA    T +    C IC    + + M   
Sbjct: 152 ASTGTVLVATRDDNFALRLA----------IDALVKATQEKPLTCSICSDKTDAEHMLLN 211

Query: 278 NDCLHRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFKE 337
           + CLHR+CFSC+K+ V+VK   G    C  +GCKS + +E+   +  PK+IE+  ++ +E
Sbjct: 212 DKCLHRHCFSCVKQQVKVKLRSGIVPPCLEDGCKSELTLESCSMVLTPKLIEMWKRKMEE 271

Query: 338 SSIPFSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATWH 397
             IP +EK+YCP   CS LMSKTE       +   AEQS  R C+KC  LFCI CK  WH
Sbjct: 272 DLIPDAEKIYCPYRSCSMLMSKTE-------LSREAEQSNVRACIKCSELFCIDCKVPWH 331

Query: 398 NDMTCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFCY 457
           +D++C +Y++        D  L  LA +++W+ C  C H++EL EGC HI CRCG+EFCY
Sbjct: 332 SDLSCADYKRIHSERLVNDMMLKVLANDQMWRQCSECKHMIELTEGCNHITCRCGYEFCY 375

Query: 458 SCGAEW 459
            CG +W
Sbjct: 392 RCGHKW 375

[Close]

BLAST of Carg20237 vs. Swiss-Prot
Match: sp|F4KGU4|DEAHC_ARATH (ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g10370 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.1e-17
Identity = 52/211 (24.64%), Postives = 89/211 (42.18%), Query Frame = 0


Query: 257  CEICYVDNELDQMYTVNDCLHRYCFSCMKKHVE--VKFLDGSEAKCPHEGCKSTVGIENF 316
            C IC   +E+D  Y++  C H +C +C+ +  E  ++  D     C H  C + + + + 
Sbjct: 1564 CPICL--SEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVLADM 1623

Query: 317  EKLFPPKVIEIIHQRFKESSIPFSEKV--YCPQPRCSALMSKTEVLDYTKDILGNAEQSG 376
              L   + ++ +      S +  S+    +C  P C ++            + G  E   
Sbjct: 1624 RALLSQEKLDELFSASLSSFVTSSDGKFRFCSTPDCPSVYR----------VAGPQESGE 1683

Query: 377  ARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHL 436
               C  CH   C +C   +H  +TCE Y+K     +  D  L   AK K  + C  C   
Sbjct: 1684 PFICGACHSEICTRCHLEYHPLITCERYKKFK---ENPDLSLKDWAKGKNVKECPICKST 1743

Query: 437  VELAEGCFHIVCRCGHEFCYSCGAEWKNRQP 464
            +E  +GC H+ CRCG   C++C   +   +P
Sbjct: 1744 IEKTDGCNHMKCRCGKHICWTCLDVFTQEEP 1759

[Close]

BLAST of Carg20237 vs. Swiss-Prot
Match: sp|P0CE10|DEAHB_ARATH (ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.9e-16
Identity = 53/202 (26.24%), Postives = 85/202 (42.08%), Query Frame = 0


Query: 257  CEICYVDNELDQMYTVNDCLHRYCFSCMKKHVE--VKFLDGSEAKCPHEGCKSTVGIENF 316
            C IC   +E+D  Y++  C H +C +C+ +  E  ++  D     C H  C + + + + 
Sbjct: 1561 CPICL--SEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVVADM 1620

Query: 317  EKLF-PPKVIEIIHQRFKESSIPFSEKV-YCPQPRCSALMSKTEVLDYTKDILGNAEQSG 376
              L    K+ E+I             K+ +C  P C ++            + G  E   
Sbjct: 1621 RALLSQEKLDELISASLSAFVTSSDGKLRFCSTPDCPSIYR----------VAGPQESGE 1680

Query: 377  ARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHL 436
               C  CH   C +C   +H  +TCE Y+K     +  D  L   AK K  + C  C   
Sbjct: 1681 PFICGACHSETCTRCHLEYHPLITCERYKKFK---ENPDLSLKDWAKGKDVKECPICKST 1740

Query: 437  VELAEGCFHIVCRCGHEFCYSC 455
            +E  +GC H+ CRCG   C++C
Sbjct: 1741 IEKTDGCNHLQCRCGKHICWTC 1747

[Close]

BLAST of Carg20237 vs. Swiss-Prot
Match: sp|A2VEA3|ARI1_BOVIN (E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus OX=9913 GN=ARIH1 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.1e-15
Identity = 54/211 (25.59%), Postives = 92/211 (43.60%), Query Frame = 0


Query: 257 CEICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLD---GSEAKCPHEGCKSTVGIEN 316
           C+ICY+ N  +  +T  +C H++C  C  +++  K ++   G    CP  GC   V    
Sbjct: 184 CQICYL-NYPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNT 243

Query: 317 FEKLFPPKVIEIIHQRFKESSIPFSEKV--YCPQPRCSALMSKTEVLDYTKDILGNAEQS 376
             +L     +++ +Q    +S     ++  +CP P C  ++ K +  D  K +       
Sbjct: 244 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVV-KVQYPD-AKPV------- 303

Query: 377 GARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGH 436
              +C KC   FC  C   WH+ + C+  +K       +    N +A     + C +C  
Sbjct: 304 ---RC-KCGRQFCFNCGENWHDPVKCKWLKKWIKKCDDDSETSNWIAANT--KECPKCHV 363

Query: 437 LVELAEGCFHIVCR---CGHEFCYSCGAEWK 460
            +E   GC H+VCR   C  EFC+ C   W+
Sbjct: 364 TIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 378

[Close]

BLAST of Carg20237 vs. Swiss-Prot
Match: sp|Q9Y4X5|ARI1_HUMAN (E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens OX=9606 GN=ARIH1 PE=1 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 5.1e-15
Identity = 54/211 (25.59%), Postives = 92/211 (43.60%), Query Frame = 0


Query: 257 CEICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLD---GSEAKCPHEGCKSTVGIEN 316
           C+ICY+ N  +  +T  +C H++C  C  +++  K ++   G    CP  GC   V    
Sbjct: 186 CQICYL-NYPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNT 245

Query: 317 FEKLFPPKVIEIIHQRFKESSIPFSEKV--YCPQPRCSALMSKTEVLDYTKDILGNAEQS 376
             +L     +++ +Q    +S     ++  +CP P C  ++ K +  D  K +       
Sbjct: 246 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVV-KVQYPD-AKPV------- 305

Query: 377 GARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGH 436
              +C KC   FC  C   WH+ + C+  +K       +    N +A     + C +C  
Sbjct: 306 ---RC-KCGRQFCFNCGENWHDPVKCKWLKKWIKKCDDDSETSNWIAANT--KECPKCHV 365

Query: 437 LVELAEGCFHIVCR---CGHEFCYSCGAEWK 460
            +E   GC H+VCR   C  EFC+ C   W+
Sbjct: 366 TIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 380

[Close]

BLAST of Carg20237 vs. Swiss-Prot
Match: sp|Q9Z1K5|ARI1_MOUSE (E3 ubiquitin-protein ligase ARIH1 OS=Mus musculus OX=10090 GN=Arih1 PE=1 SV=3)

HSP 1 Score: 84.0 bits (206), Expect = 5.1e-15
Identity = 54/211 (25.59%), Postives = 92/211 (43.60%), Query Frame = 0


Query: 257 CEICYVDNELDQMYTVNDCLHRYCFSCMKKHVEVKFLD---GSEAKCPHEGCKSTVGIEN 316
           C+ICY+ N  +  +T  +C H++C  C  +++  K ++   G    CP  GC   V    
Sbjct: 184 CQICYL-NYPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNT 243

Query: 317 FEKLFPPKVIEIIHQRFKESSIPFSEKV--YCPQPRCSALMSKTEVLDYTKDILGNAEQS 376
             +L     +++ +Q    +S     ++  +CP P C  ++ K +  D  K +       
Sbjct: 244 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVV-KVQYPD-AKPV------- 303

Query: 377 GARKCMKCHGLFCIKCKATWHNDMTCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGH 436
              +C KC   FC  C   WH+ + C+  +K       +    N +A     + C +C  
Sbjct: 304 ---RC-KCGRQFCFNCGENWHDPVKCKWLKKWIKKCDDDSETSNWIAANT--KECPKCHV 363

Query: 437 LVELAEGCFHIVCR---CGHEFCYSCGAEWK 460
            +E   GC H+VCR   C  EFC+ C   W+
Sbjct: 364 TIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 378

[Close]

BLAST of Carg20237 vs. TrEMBL
Match: tr|A0A1S3CKS8|A0A1S3CKS8_CUCME (RBR-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103501923 PE=3 SV=1)

HSP 1 Score: 595.9 bits (1535), Expect = 8.1e-167
Identity = 302/503 (60.04%), Postives = 361/503 (71.77%), Query Frame = 0


Query: 1   MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM 60
           M  G   +DS LDDDELAYDLQ++EVIA S   F P       XXXX     F DDD+E 
Sbjct: 1   MASGATNIDSDLDDDELAYDLQMEEVIAAS-LNFLPSTSHSPPXXXXXXXXXFPDDDSEN 60

Query: 61  RYATNLWT----------------------YLTSDDDGMGYDYRMPSDTDVSA--LLDPL 120
             A  L                           SDD+  GYD+ M   T +SA  L +PL
Sbjct: 61  HDAIMLLDDDASVGDDGLEHRLNDLVAEDFINVSDDEWGGYDW-MSYRTSMSALKLCNPL 120

Query: 121 FDSESYRLYFKGLVGKETAGDVTIIAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAEL 180
           FD +S RLYFKGLV +E+  D T+  VAVFD R++L++ V++PLE  RE  A+SP VAEL
Sbjct: 121 FDPDSSRLYFKGLVNEESVRDETVTVVAVFDPRENLMMEVKRPLETVRERGAISPVVAEL 180

Query: 181 MALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFSYCE 240
           MALI+GLEAAL   L+RVSFFCDD  L++Y+TGRLRPKL ++  LV++V  LR  FSYCE
Sbjct: 181 MALIEGLEAALVFPLKRVSFFCDDRALYRYITGRLRPKLREVERLVDQVGLLRGYFSYCE 240

Query: 241 PFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQMYTVNDCL 300
           PFLVE N +K AF L           P  ET ++   +ENC+ICY D ELDQM+T++ CL
Sbjct: 241 PFLVEPNDVKYAFSLAN-------GFPAIETGDSRKFVENCKICYEDRELDQMFTIDGCL 300

Query: 301 HRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIP 360
           HRYCFSCM+KHVEVKFL GS AKCPHEGC+S V +E+ +KL PP VIEII QR KESSIP
Sbjct: 301 HRYCFSCMRKHVEVKFLGGSVAKCPHEGCESIVRVESCDKLLPPNVIEIIQQRLKESSIP 360

Query: 361 FSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMT 420
           FS+KVYCPQPRCSALMSKTEVL+YTK+I  NA+QSG RKC+KCH LFCIKCKA+WH +MT
Sbjct: 361 FSDKVYCPQPRCSALMSKTEVLEYTKEIYKNAKQSGTRKCVKCHQLFCIKCKASWHVNMT 420

Query: 421 CEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGA 480
           CE Y+KSSH TQT DAKL  LA+EKLW+ C RC HLVEL+EGC+HI+CRCG+EFCY+CGA
Sbjct: 421 CEAYKKSSHNTQTADAKLKILAREKLWRTCARCSHLVELSEGCYHIICRCGYEFCYTCGA 480

[Close]

BLAST of Carg20237 vs. TrEMBL
Match: tr|A0A0A0KC52|A0A0A0KC52_CUCSA (RBR-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G290810 PE=3 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 1.5e-165
Identity = 302/503 (60.04%), Postives = 358/503 (71.17%), Query Frame = 0


Query: 1   MVDGTVILDSGLDDDELAYDLQLKEVIALSQTQFSPPXXXXXXXXXXSRSSPFLDDDNEM 60
           M  G   +DS L+DDELAYDLQ++EVIA S     P      XXXXX       DDD+E 
Sbjct: 1   MASGATNIDSDLNDDELAYDLQMEEVIAAS-LNLLPSTSHSPXXXXXXXXXXXPDDDSEN 60

Query: 61  RYATNLWT----------------------YLTSDDDGMGYDYRMPSDTDVSA--LLDPL 120
             A  L                           SDD+  GYD+ M   T VSA  L +PL
Sbjct: 61  HDAVMLSDDDASVGDDGLDHRLNDLVAGDFINVSDDEWGGYDW-MSYRTSVSALKLCNPL 120

Query: 121 FDSESYRLYFKGLVGKETAGDVTIIAVAVFDSRDDLLIHVRKPLEAARENEAVSPEVAEL 180
           FD E  RLYFKGLV +++  D T+  VAVFD R++LL+ V+ PLE  RE  A++P VAEL
Sbjct: 121 FDPEGSRLYFKGLVNEDSVRDETVTVVAVFDPRENLLMEVKSPLETVRERMAINPVVAEL 180

Query: 181 MALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFSYCE 240
           MALI+GLEAAL   L RVSFFCDD  L++Y+TGRLRPKL ++  LV++V  LR  FSYCE
Sbjct: 181 MALIEGLEAALVFPLRRVSFFCDDRALYRYITGRLRPKLKEVERLVDQVGLLRGYFSYCE 240

Query: 241 PFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQMYTVNDCL 300
           PFLVE+N +K AF+L           P  ET ++   +ENC+ICY D ELDQM+T++DCL
Sbjct: 241 PFLVERNDVKYAFRLAN-------CYPAIETKDSRKFVENCKICYEDRELDQMFTIDDCL 300

Query: 301 HRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFKESSIP 360
           HRYCFSC +KHVEVKFL GS AKCPHEGC+S V +E+ +KL PP VIEII QR KESSIP
Sbjct: 301 HRYCFSCTRKHVEVKFLGGSVAKCPHEGCESVVKVESCDKLLPPNVIEIIQQRLKESSIP 360

Query: 361 FSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATWHNDMT 420
           FS+KVYCPQPRCSALMSKTEVL+YTKDI  NAE SG RKC+KCH LFCIKCK++WH +MT
Sbjct: 361 FSDKVYCPQPRCSALMSKTEVLEYTKDIHENAEHSGTRKCVKCHQLFCIKCKSSWHVNMT 420

Query: 421 CEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYSCGA 480
           CE Y+KS H TQTEDAKL  LA+EKLW+PC RC HLVEL+EGC+HI+CRCGHEFCYSCGA
Sbjct: 421 CEVYKKSIHNTQTEDAKLKILAREKLWRPCARCSHLVELSEGCYHIICRCGHEFCYSCGA 480

[Close]

BLAST of Carg20237 vs. TrEMBL
Match: tr|A0A2N9FRT2|A0A2N9FRT2_FAGSY (RBR-type E3 ubiquitin transferase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17727 PE=3 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.3e-127
Identity = 222/390 (56.92%), Postives = 286/390 (73.33%), Query Frame = 0


Query: 100 ESYRLYFKGLVGKETAGDVTIIA----VAVFDSRDDLLIHVRKPLEA-----ARENEAVS 159
           E +R+YFKGLV +E   D  +IA     AV DSRD+L++ V+KPLE+        ++ +S
Sbjct: 139 ECFRVYFKGLVSEERVRDRKVIAAGIGAAVCDSRDNLIVKVKKPLESEALVGGASDQVLS 198

Query: 160 PEVAELMALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRL-RPKLSKIASLVEKVAFLR 219
            + A+L ALIKGLEAALS  L+R++FFCDDY+++QYV GRL RP+ SKIA L+++VA LR
Sbjct: 199 SQGADLYALIKGLEAALSFDLKRLTFFCDDYIIYQYVLGRLPRPRQSKIAELIDQVAILR 258

Query: 220 VQFSYCEPFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQM 279
            +F+YC P LV +N +K AFKL ++   +Q+T      S    L E C ICY DN++DQM
Sbjct: 259 SKFTYCNPSLVARNDIKLAFKLAKEVIITQVT-----WSAGKSLKETCVICYEDNDVDQM 318

Query: 280 YTVNDCLHRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQR 339
           ++V+ CLHRYC SCMK+HVEVK L+G  AKCPHEGCKS V I++ EK   PK+I+++ QR
Sbjct: 319 FSVDGCLHRYCLSCMKQHVEVKLLNGMGAKCPHEGCKSEVNIDSCEKFLDPKLIQVMTQR 378

Query: 340 FKESSIPFSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKA 399
            KESSIP +EKVYCP P+CSALMSK+EVL+YTK +   AEQSG RKC+KC   FCIKCK 
Sbjct: 379 SKESSIPVTEKVYCPYPKCSALMSKSEVLEYTKTVDFTAEQSGVRKCIKCLKRFCIKCKV 438

Query: 400 TWHNDMTCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHE 459
            WHN  TC +Y K+      EDAKL SLAK KLW+ C++C H+VELAEGC+HI CRCGHE
Sbjct: 439 PWHNGRTCRDYEKN---PSAEDAKLKSLAKNKLWRQCVKCNHMVELAEGCYHITCRCGHE 498

Query: 460 FCYSCGAEWKNRQPTCLCPMWDEHLILNDE 480
           FCY+CGA+WKN++  C CP WDE  I+ D+
Sbjct: 499 FCYTCGAKWKNKKARCSCPRWDERNIIRDQ 520

[Close]

BLAST of Carg20237 vs. TrEMBL
Match: tr|A0A2I4EHJ4|A0A2I4EHJ4_9ROSI (RBR-type E3 ubiquitin transferase OS=Juglans regia OX=51240 GN=LOC108989645 PE=3 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 8.2e-127
Identity = 214/389 (55.01%), Postives = 282/389 (72.49%), Query Frame = 0


Query: 96  LFDSESYRLYFKGLVGKETAGDVTI----IAVAVFDSRDDLLIHVRKPLEAARENEAVSP 155
           L D+E +RLYFKGLV +E+  D+ +      VA+ D RD L++  RK +EA  + + V+ 
Sbjct: 158 LVDTECFRLYFKGLVSEESVRDMKVTVAGAGVAICDPRDSLILEARKNVEALVDGQVVTN 217

Query: 156 EVAELMALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQ 215
           EVAEL ALI+GLE ALSL L+R++FFCDDYML+QYVTGR+ P+ S + +LV +V  L+ +
Sbjct: 218 EVAELEALIEGLENALSLDLKRLTFFCDDYMLYQYVTGRVLPRQSHVVTLVNQVTLLQRK 277

Query: 216 FSYCEPFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQMYT 275
           F +C P  V +N +K AFK    A  SQIT P+ ETS    L E C IC+ D + ++M++
Sbjct: 278 FVFCNPSFVARNDIKFAFKSARDAVVSQITWPE-ETSKGKSLKETCVICFEDTDANKMFS 337

Query: 276 VNDCLHRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFK 335
           V+ CLHRYCFSCMK+HVEVK L+G  AKCPHEGC S V +++  K   P+++E++ QR K
Sbjct: 338 VDGCLHRYCFSCMKQHVEVKLLNGMGAKCPHEGCNSEVNVDSCGKFLAPQLVEVMTQRMK 397

Query: 336 ESSIPFSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATW 395
           ESSIP  ++VYCP PRCSALMSK+EVL YTK+I   AEQSG RKCMKCH  FCI CK  W
Sbjct: 398 ESSIPVIQRVYCPYPRCSALMSKSEVLQYTKNINVTAEQSGLRKCMKCHYFFCINCKVPW 457

Query: 396 HNDMTCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFC 455
           H  M+C +Y++S+  +  EDAKL SLA  K W+ C +C H++ELAEGC+HI CRCG+EFC
Sbjct: 458 HFKMSCYDYKRSNPHSHPEDAKLKSLATTKHWRQCQKCNHVIELAEGCYHITCRCGYEFC 517

Query: 456 YSCGAEWKNRQPTCLCPMWDEHLILNDEQ 481
           Y+CGA+WKN++ TC CP+WD   I+ DEQ
Sbjct: 518 YTCGAQWKNKKATCSCPIWDVRNIIRDEQ 545

[Close]

BLAST of Carg20237 vs. TrEMBL
Match: tr|A0A251NMJ3|A0A251NMJ3_PRUPE (RBR-type E3 ubiquitin transferase OS=Prunus persica OX=3760 GN=PRUPE_6G094500 PE=3 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 5.5e-123
Identity = 208/386 (53.89%), Postives = 279/386 (72.28%), Query Frame = 0


Query: 98  DSESYRLYFKGLVGKETAGDVTII----AVAVFDSRDDLLIHVRKPLEAARENEAVSPEV 157
           ++E+ RLY KGLV +E   D+ ++     VA+ D RD+L+   RK LEA  +   +S E 
Sbjct: 159 ETENLRLYCKGLVSEERVRDMKVVVAGAGVAICDPRDNLIFEARKNLEAVADGVVLSNEA 218

Query: 158 AELMALIKGLEAALSLHLERVSFFCDDYMLHQYVTGRLRPKLSKIASLVEKVAFLRVQFS 217
           AEL A+I+GL  AL+L L+ V+F+CDDYML+QYVT R+RP  SK+A+LV +VA L+ +F 
Sbjct: 219 AELEAIIEGLNKALTLDLKSVTFYCDDYMLYQYVTNRVRPGNSKVATLVNQVALLQRKFE 278

Query: 218 YCEPFLVEQNVMKSAFKLVEQATASQITLPDAETSNTHDLLENCEICYVDNELDQMYTVN 277
           YC P LV +  +K A K+  +A  SQIT   A++SN   L E C IC+ + ++ +M++++
Sbjct: 279 YCSPSLVTRTDIKFALKVAREAIVSQITW-RADSSNGKSLKETCVICFEETDVAEMFSID 338

Query: 278 DCLHRYCFSCMKKHVEVKFLDGSEAKCPHEGCKSTVGIENFEKLFPPKVIEIIHQRFKES 337
            CLHRYC SCMK+HVEVKFL+G  A+CPHEGCK+ V I++  K   PK++E I QR KES
Sbjct: 339 GCLHRYCCSCMKQHVEVKFLNGMGAECPHEGCKNEVNIDSCAKFLAPKLVEAISQRIKES 398

Query: 338 SIPFSEKVYCPQPRCSALMSKTEVLDYTKDILGNAEQSGARKCMKCHGLFCIKCKATWHN 397
           SIP ++KVYCP PRCSALMSK EVL+YTK     AEQ+GAR+CMKCH  FCI CK  WH 
Sbjct: 399 SIPVTDKVYCPNPRCSALMSKKEVLEYTKTTFVRAEQTGARRCMKCHYYFCINCKVPWHF 458

Query: 398 DMTCEEYRKSSHGTQTEDAKLNSLAKEKLWQPCLRCGHLVELAEGCFHIVCRCGHEFCYS 457
           +MTC +Y++S      ED  LNSLA +KLW+ C++C H+VELAEGC+HI CRCG+EFCY+
Sbjct: 459 NMTCYDYKRSHPYPHREDQLLNSLATKKLWRQCVKCNHMVELAEGCYHITCRCGYEFCYT 518

Query: 458 CGAEWKNRQPTCLCPMWDEHLILNDE 480
           CGAEWKN++ TC C +WDE  I+ ++
Sbjct: 519 CGAEWKNKKATCSCRIWDERNIIREQ 543

The following BLAST results are available for this feature:

BLAST of Carg20237 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947938.1	7.7e-278	98.96	probable E3 ubiquitin-protein ligase ARI9 [Cucurbita moschata]	[more]
XP_023007395.1	1.4e-276	98.54	probable E3 ubiquitin-protein ligase ARI9 [Cucurbita maxima]	[more]
XP_023532221.1	5.1e-274	98.13	ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucurbita pepo subsp. pep...	[more]
XP_008463910.1	1.2e-166	60.04	PREDICTED: E3 ubiquitin-protein ligase dbl4-like [Cucumis melo]	[more]
XP_004149564.1	2.3e-165	60.04	PREDICTED: uncharacterized protein LOC101217459 [Cucumis sativus] >KGN47300.1 hy...	[more]

BLAST of Carg20237 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60250.1	7.3e-97	43.90	zinc finger (C3HC4-type RING finger) family protein	[more]
AT2G25370.1	1.0e-74	39.19	RING/U-box superfamily protein	[more]
AT2G25360.1	2.0e-70	40.65	RING/U-box superfamily protein	[more]
AT3G45580.1	2.0e-70	36.59	RING/U-box protein with C6HC-type zinc finger	[more]
AT5G37560.1	2.7e-67	37.70	RING/U-box superfamily protein	[more]

BLAST of Carg20237 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4KGU4\|DEAHC_ARATH	7.1e-17	24.64	ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
sp\|P0CE10\|DEAHB_ARATH	7.9e-16	26.24	ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
sp\|A2VEA3\|ARI1_BOVIN	5.1e-15	25.59	E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus OX=9913 GN=ARIH1 PE=2 SV=1	[more]
sp\|Q9Y4X5\|ARI1_HUMAN	5.1e-15	25.59	E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens OX=9606 GN=ARIH1 PE=1 SV=2	[more]
sp\|Q9Z1K5\|ARI1_MOUSE	5.1e-15	25.59	E3 ubiquitin-protein ligase ARIH1 OS=Mus musculus OX=10090 GN=Arih1 PE=1 SV=3	[more]

BLAST of Carg20237 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CKS8\|A0A1S3CKS8_CUCME	8.1e-167	60.04	RBR-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103501923 PE=3 S...	[more]
tr\|A0A0A0KC52\|A0A0A0KC52_CUCSA	1.5e-165	60.04	RBR-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G290810 PE=...	[more]
tr\|A0A2N9FRT2\|A0A2N9FRT2_FAGSY	1.3e-127	56.92	RBR-type E3 ubiquitin transferase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17727 ...	[more]
tr\|A0A2I4EHJ4\|A0A2I4EHJ4_9ROSI	8.2e-127	55.01	RBR-type E3 ubiquitin transferase OS=Juglans regia OX=51240 GN=LOC108989645 PE=3...	[more]
tr\|A0A251NMJ3\|A0A251NMJ3_PRUPE	5.5e-123	53.89	RBR-type E3 ubiquitin transferase OS=Prunus persica OX=3760 GN=PRUPE_6G094500 PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004842	ubiquitin-protein transferase activity
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0016567	protein ubiquitination

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR017907	Znf_RING_CS
IPR031127	E3_UB_ligase_RBR
IPR036397	RNaseH_sf
IPR013083	Znf_RING/FYVE/PHD
IPR002867	IBR_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20237-RA	Carg20237-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002867	IBR domain	SMART	SM00647	ibrneu5	coord: 407..465 e-value: 0.024 score: 19.9 coord: 324..397 e-value: 2.7E-15 score: 66.8
IPR002867	IBR domain	PFAM	PF01485	IBR	coord: 411..465 e-value: 2.5E-7 score: 30.7 coord: 327..397 e-value: 2.0E-12 score: 47.1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 254..338 e-value: 1.2E-13 score: 52.9
None	No IPR available	PFAM	PF13456	RVT_3	coord: 121..234 e-value: 8.9E-14 score: 51.3
None	No IPR available	GENE3D	G3DSA:1.20.120.1750		coord: 395..474 e-value: 8.0E-8 score: 34.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..55
None	No IPR available	PANTHER	PTHR11685:SF132	SUBFAMILY NOT NAMED	coord: 96..468
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 255..336
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 411..475
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 104..242 e-value: 3.8E-7 score: 31.9
IPR031127	E3 ubiquitin ligase RBR family	PANTHER	PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	coord: 96..468
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 275..284
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 257..301 score: 9.435
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 426..469 score: 8.609

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20237	Cla000546	Watermelon (97103) v1	carwmB0302
Carg20237	Csa6G290800	Cucumber (Chinese Long) v2	carcuB0336
Carg20237	MELO3C025743	Melon (DHL92) v3.5.1	carmeB0307
Carg20237	ClCG02G020920	Watermelon (Charleston Gray)	carwcgB0299
Carg20237	CSPI06G16220	Wild cucumber (PI 183967)	carcpiB0342
Carg20237	Cucsa.052730	Cucumber (Gy14) v1	carcgyB0355
Carg20237	CmaCh02G008720	Cucurbita maxima (Rimu)	carcmaB0425
Carg20237	CmaCh20G004680	Cucurbita maxima (Rimu)	carcmaB0424
Carg20237	CmoCh02G008710	Cucurbita moschata (Rifu)	carcmoB0421
Carg20237	CmoCh20G005030	Cucurbita moschata (Rifu)	carcmoB0420
Carg20237	Lsi10G012930	Bottle gourd (USVL1VR-Ls)	carlsiB279
Carg20237	Cp4.1LG16g05570	Cucurbita pepo (Zucchini)	carcpeB0423
Carg20237	Cp4.1LG05g08750	Cucurbita pepo (Zucchini)	carcpeB0429
Carg20237	CsGy6G015740	Cucumber (Gy14) v2	carcgybB0320
Carg20237	MELO3C025743.2	Melon (DHL92) v3.6.1	carmedB0317
Carg20237	CsaV3_6G021590	Cucumber (Chinese Long) v3	carcucB0341
Carg20237	Cla97C02G046940	Watermelon (97103) v2	carwmbB0315
Carg20237	Bhi10G000477	Wax gourd	carwgoB0392

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20237	Carg03258	Silver-seed gourd	carcarB330

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20237	Wax gourd	carwgoB0391
Carg20237	Silver-seed gourd	carcarB185
Carg20237	Cucumber (Gy14) v2	carcgybB0318
Carg20237	Cucurbita maxima (Rimu)	carcmaB0429
Carg20237	Cucurbita pepo (Zucchini)	carcpeB0430
Carg20237	Wild cucumber (PI 183967)	carcpiB0338
Carg20237	Wild cucumber (PI 183967)	carcpiB0340
Carg20237	Cucumber (Chinese Long) v2	carcuB0332
Carg20237	Cucumber (Chinese Long) v2	carcuB0334
Carg20237	Cucumber (Chinese Long) v3	carcucB0339
Carg20237	Bottle gourd (USVL1VR-Ls)	carlsiB282
Carg20237	Melon (DHL92) v3.5.1	carmeB0310
Carg20237	Melon (DHL92) v3.6.1	carmedB0319
Carg20237	Watermelon (Charleston Gray)	carwcgB0297
Carg20237	Watermelon (97103) v1	carwmB0297
Carg20237	Watermelon (97103) v2	carwmbB0313