Carg19997 (gene) Silver-seed gourd

Overview
NameCarg19997
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHigh mobility group B protein
LocationCucurbita_argyrosperma_scaffold_167 : 315336 .. 318184 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGTCACTGGACCGAGGGTCCAAATCCCACACGTGTGAGAAGATCGAACGTGCCAGATATTTATTTATATTAATATAATCTCTCTTTGTCGCTATCTGTATGGGATCGCTTTGGCGGCAATGATCATTTCCACAAAACCCAAAAGATAATTCCTTTGTGATCATATTCATATATTCTTCCTTCCTATTTATTTATTTTTCCAAAAAATTAGAATATCGGTTACTGGCTATAGCCAGTAAAAGGTCGCTCTTCGGTGGCTCGTGTGGCGGCAATTGTTGCATGTGTTACCGGTAGTTCCGGTTGCTCTAATCAATTTCCTTCTCTCCCCGGGTTCGAATTCAACCCTGGTTCTTTTGAACTCTTTTGTTTCTTCTATCACTCTCTCTCTCTCTCTCTGAGTCTTCGAAATATCTCTGTTGTTGATTCTCTATTCTCTATTTCCTTTCCGATTCCTTTTGGATCGGACGGCTTGGTTCATCGAAGGTAATCGATTCTCAGCTTTCTAGATCTCTTCTTTTCTTTGTTTTTTGTTCGTCGTTCTACTTTTCATCTACTTTGTTTGTTTTGCCTGCAAAATTATCGTCGGTTGAAGCTAATTTGTTGAGTTTTTAAGGTTGCGTTCGTTTTCTTTTCCTCTATTTCCGTGGAGAATAATCGTTGTTGATCTACATATGTTGTGTTTTTATGTATTTATCATCTTAATAATTGGTACTGGAGTTGTTAGTTGTTTAACAACTTCAACGGGAGAGTGAACTGAAGAAGTAGCAGCAAGGGTTCAAGAATTAAGTTATGTTAATTCAATTACATTTTAGGTTTATTTTTCAGTCTAAAGCTCTGTCCCCGATTAAACAAGTGATTTTTCATAGTTGTAATACGTAAGAATCTGCCGAGGCTTATTTTCCTTTTTGTATGTACTTTTTACTGTTAATCGTCTGTAGCTGGTTGATGTAGTTAGTCAAATGTAGAGAGGGTTTTTTCAATTGAAATTTAGGGATTCTAGTCTTGTTAAGGTCAAATATGTCTCAAGAACATGTATTATTACACTATTGACTTCCACTTGATTTGTTTGCTTCTGGATATTCCTCAATTAATACATATCATTGTTCCTTCTACTTCAACGGTTTCTAGAGGTTGCTTTCACTGCGTTTTTGTACTTTTGGCATGTACTTTTATGTTAACAATCTTGATTTATTGATTCTTGTCAGGACTGTTTGAGGTACTGCGCTTTCTTATTTTGCCTCAAATTGTTCTTGTCCTGATTGTCGTGCATGTAGGCTGTTTTTTAAACTATTGCACTTTTTAGTAACTCGCCGTATCATTATCCTGCTACTCCATAACTAGTCATTTTGAACAGGCATTTGTCTTGCATAATGAAGGGGCCCAAGGGTAAGGGAACATCAAGGGTCTCCAAGGAAGCTTTGAAGCCAGTGGATGATAGGTAGTTTTTTGCCCATTGTCCCACTAAGTTTTATTAGTCTGATAAAACCTTGCAATTGTTGGGTTAGGATTGTCTGCGATCCATGGCTGGCATCTTTTTTTTGGAGTATCGAATTTCCAGCAAGTTTTTTAGTTCTATTGAAATCTAATATCCACATACTCGGTGGTGTGTATACAGCATTTACAGGAGTTTTGTAGTGACGGATCATAAATATCTCTATTCTTTTCAGAAAGGTTGGGAAGCGAAAGGCTGCCATCAAGGCTGACAAGGGTATCAAACGACCGACAAAGAAAGAATTGAAAGCCTTGAAAGATCCCAACAAACCTAAGAGGCCTCCGAGTGCTTTTTTTGTCTTCCTGTTCGTATTGCCTTTTGCCATTTTGTCTTCAGGCTAAAATCTATTTGTTTGATTTCCTTCATGCAGCAAATTTTCTGATCTTTTTGAAATTTTATATAACAGTGAGGAGTTCAGACAGGAGTACAAGAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTATGTGATCTTTGAAATTGTTATAAAGATTCACACAAACTTGAGATGCAAATATACAGTCAATTGTTAACGTTTTCTCCACACCTGCAGGTCGGAAAAGCTGGAGGACAGAGGTGGCAATCATTGACTCATGATGTAAGTAATGTTGTGTATTACATAACAATTCAAGCGGGCTTAAAATGGTTGCCCTCATTTCATTTTTCCTGCATGTATATATGATGTTGATCAAGGAAACTCTGTTTTTAGAGGTGTGACATTTGTATTTTTCTGCCTCTGCAATGATATTTTCTTACCATGGGTGTTGCACAATATTCCATTTCTAATAATAACTGGCTGGGTTGAAAGGAAAAAGCACCCTATGAAGCTAAGGCGGCTAAGAGGAAGGCTGAATATGAAAAGCTTATGAGGGCATACGACAGCAAGAAGGTAGGCGCGCTCTGTATTTTGTGTATCGATCAAACTTATAAAACTTCACTGCAACAAACGCTTATACATGCTGTTATCTGGGAATAGGCTAGTGAAGCTGATGACGAAGAATTAGAGAGGTCGAAATCTGAAGTGAACGGCGAGGATGAGGCCAGTGAGGAGGTATTTTTGATACATAATAAGCAAATGCTTCAATGCTTGTACATGTCTATTTCAGTTCATATTATGCAAATTCAGATCGTATCTGCTGTTTCATGTGCGCATATTTCATTTTATAAGCCTACTGATTGTTTGAAGTTGAGAGTAACAAAGTTATGTTCTACCTACTTAGCTTGTTGCATACTATGAATAGTTGTTCGCTTCTCTATCAACACATGTTCAATACTCAACTCTTTGCAGGAACATCACGAAGACGATGAGGAGGAGGAGGACGACGACGAAGATGATGAAGAGGATGATTAA

mRNA sequence

ATGGAGGGTCACTGGACCGAGGGTCCAAATCCCACACGTCCAGTAAAAGGTCGCTCTTCGGTGGCTCGTGTGGCGGCAATTGTTGCATGTGTTACCGGTAGTTCCGGTTGCTCTAATCAATTTCCTTCTCTCCCCGGGTTCGAATTCAACCCTGGTTCTTTTGAACTCTTTTGTTTCTTCTATCACTCTCTCTCTCTCTCTCTGAGTCTTCGAAATATCTCTGTTGTTGATTCTCTATTCTCTATTTCCTTTCCGATTCCTTTTGGATCGGACGGCTTGGTTCATCGAAGGCATTTGTCTTGCATAATGAAGGGGCCCAAGGGTAAGGGAACATCAAGGGTCTCCAAGGAAGCTTTGAAGCCAGTGGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCCATCAAGGCTGACAAGGGTATCAAACGACCGACAAAGAAAGAATTGAAAGCCTTGAAAGATCCCAACAAACCTAAGAGGCCTCCGAGTGCTTTTTTTGTCTTCCTCAAATTTTCTGATCTTTTTGAAATTTTATATAACAGTGAGGAGTTCAGACAGGAGTACAAGAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTCGGAAAAGCTGGAGGACAGAGGTGGCAATCATTGACTCATGATGAAAAAGCACCCTATGAAGCTAAGGCGGCTAAGAGGAAGGCTGAATATGAAAAGCTTATGAGGGCATACGACAGCAAGAAGGCTAGTGAAGCTGATGACGAAGAATTAGAGAGGTCGAAATCTGAAGTGAACGGCGAGGATGAGGCCAGTGAGGAGGAACATCACGAAGACGATGAGGAGGAGGAGGACGACGACGAAGATGATGAAGAGGATGATTAA

Coding sequence (CDS)

ATGGAGGGTCACTGGACCGAGGGTCCAAATCCCACACGTCCAGTAAAAGGTCGCTCTTCGGTGGCTCGTGTGGCGGCAATTGTTGCATGTGTTACCGGTAGTTCCGGTTGCTCTAATCAATTTCCTTCTCTCCCCGGGTTCGAATTCAACCCTGGTTCTTTTGAACTCTTTTGTTTCTTCTATCACTCTCTCTCTCTCTCTCTGAGTCTTCGAAATATCTCTGTTGTTGATTCTCTATTCTCTATTTCCTTTCCGATTCCTTTTGGATCGGACGGCTTGGTTCATCGAAGGCATTTGTCTTGCATAATGAAGGGGCCCAAGGGTAAGGGAACATCAAGGGTCTCCAAGGAAGCTTTGAAGCCAGTGGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCCATCAAGGCTGACAAGGGTATCAAACGACCGACAAAGAAAGAATTGAAAGCCTTGAAAGATCCCAACAAACCTAAGAGGCCTCCGAGTGCTTTTTTTGTCTTCCTCAAATTTTCTGATCTTTTTGAAATTTTATATAACAGTGAGGAGTTCAGACAGGAGTACAAGAGGGAAAATCCTAATGTGAAGGCAGTATCTGCAGTCGGAAAAGCTGGAGGACAGAGGTGGCAATCATTGACTCATGATGAAAAAGCACCCTATGAAGCTAAGGCGGCTAAGAGGAAGGCTGAATATGAAAAGCTTATGAGGGCATACGACAGCAAGAAGGCTAGTGAAGCTGATGACGAAGAATTAGAGAGGTCGAAATCTGAAGTGAACGGCGAGGATGAGGCCAGTGAGGAGGAACATCACGAAGACGATGAGGAGGAGGAGGACGACGACGAAGATGATGAAGAGGATGATTAA

Protein sequence

MEGHWTEGPNPTRPVKGRSSVARVAAIVACVTGSSGCSNQFPSLPGFEFNPGSFELFCFFYHSLSLSLSLRNISVVDSLFSISFPIPFGSDGLVHRRHLSCIMKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPSAFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAKAAKRKAEYEKLMRAYDSKKASEADDEELERSKSEVNGEDEASEEEHHEDDEEEEDDDEDDEEDD
Homology
[Close]
BLAST of Carg19997 vs. NCBI nr
Match: XP_023545143.1 (high mobility group B protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.8 bits (673), Expect = 6.6e-67
Identity = 144/156 (92.31%), Postives = 144/156 (92.31%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS
Sbjct: 1   MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVFL            EEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK
Sbjct: 61  AFFVFL------------EEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 120

Query: 223 AAKRKAEYEKLMRAYDSKKASEADDEELERSKSEVN 259
           AAKRKAEYEKLMRAYDSKKASEADDEELERSKSEVN
Sbjct: 121 AAKRKAEYEKLMRAYDSKKASEADDEELERSKSEVN 144

[Close]
BLAST of Carg19997 vs. NCBI nr
Match: XP_022949766.1 (high mobility group B protein 1-like [Cucurbita moschata])

HSP 1 Score: 260.8 bits (665), Expect = 5.6e-66
Identity = 143/156 (91.67%), Postives = 143/156 (91.67%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MK PKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS
Sbjct: 1   MKRPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVFL            EEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK
Sbjct: 61  AFFVFL------------EEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 120

Query: 223 AAKRKAEYEKLMRAYDSKKASEADDEELERSKSEVN 259
           AAKRKAEYEKLMRAYDSKKASEADDEELERSKSEVN
Sbjct: 121 AAKRKAEYEKLMRAYDSKKASEADDEELERSKSEVN 144

[Close]
BLAST of Carg19997 vs. NCBI nr
Match: XP_022978298.1 (high mobility group B protein 1-like [Cucurbita maxima])

HSP 1 Score: 256.9 bits (655), Expect = 8.0e-65
Identity = 140/152 (92.11%), Postives = 140/152 (92.11%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS
Sbjct: 1   MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVFL            EEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK
Sbjct: 61  AFFVFL------------EEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 120

Query: 223 AAKRKAEYEKLMRAYDSKKASEADDEELERSK 255
           AAKRKAEYEKLMRAYDSKKASEADDEELERSK
Sbjct: 121 AAKRKAEYEKLMRAYDSKKASEADDEELERSK 140

[Close]
BLAST of Carg19997 vs. NCBI nr
Match: XP_011653690.1 (PREDICTED: high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 PREDICTED: high mobility group B protein 1 [Cucumis sativus] >KGN54377.1 hypothetical protein Csa_4G309150 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 7.8e-52
Identity = 114/137 (83.21%), Postives = 121/137 (88.32%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MKG KGKGTSRVSKEALKPVDDRKVGKRKA +KADKGIKRPTKK+LKA KDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVFL            EEFR+EYKRENPNVKAVSAVGKAGG++W+SL+H EKAPYEAK
Sbjct: 61  AFFVFL------------EEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAK 120

Query: 223 AAKRKAEYEKLMRAYDS 240
           AAKRKAEYEKLMRAYDS
Sbjct: 121 AAKRKAEYEKLMRAYDS 125

[Close]
BLAST of Carg19997 vs. NCBI nr
Match: XP_008449957.1 (PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDICTED: high mobility group B protein 1 [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-51
Identity = 113/137 (82.48%), Postives = 120/137 (87.59%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MKG KGKGTSRVSKEALKPVDDRKVGKRKA +KADKG KRPTKK+LKA KDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVFL            EEFR+EYKRENPNVKAVSAVGKAGG++W+SL+H EKAPYEAK
Sbjct: 61  AFFVFL------------EEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAK 120

Query: 223 AAKRKAEYEKLMRAYDS 240
           AAKRKAEYEKLMRAYDS
Sbjct: 121 AAKRKAEYEKLMRAYDS 125

[Close]
BLAST of Carg19997 vs. TAIR10
Match: AT1G20693.1 (high mobility group B2)

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-21
Identity = 62/138 (44.93%), Postives = 80/138 (57.97%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MKG K K  +R SK ++     +  G+ KA                 A KDPNKPKRP S
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKA-----------------AAKDPNKPKRPAS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVF+            E+FR+ +K+ENP  K+V+ VGKA G +W+SL+  EKAPY AK
Sbjct: 61  AFFVFM------------EDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAK 109

Query: 223 AAKRKAEYEKLMRAYDSK 241
           A KRK EYEK ++AY+ K
Sbjct: 121 AEKRKVEYEKNIKAYNKK 109

[Close]
BLAST of Carg19997 vs. TAIR10
Match: AT2G17560.1 (high mobility group B4)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-20
Identity = 64/137 (46.72%), Postives = 88/137 (64.23%), Query Frame = 0 

Query: 126 KVGKRKA-AIKADKGIK-RPTKKELKALKDPNKPKRPPSAFFVFLKFSDLFEILYNSEEF 185
           K G+ KA A   D+ +K R  K   K  KDPN+PKRPPSAFFVFL            E+F
Sbjct: 2   KGGESKAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFL------------EDF 61

Query: 186 RQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAKAAKRKAEYEKLMRAYDSKKAS 245
           R+E+   NPN K+V+ VGKA G RW+++T ++KAPY AKA  RK EY K ++ Y+ K AS
Sbjct: 62  RKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLAS 121

Query: 246 --EADDEELERSKSEVN 259
               ++++ ++SKSEV+
Sbjct: 122 GTNREEDDSDKSKSEVD 126

[Close]
BLAST of Carg19997 vs. TAIR10
Match: AT3G51880.2 (high mobility group B1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-16
Identity = 56/116 (48.28%), Postives = 65/116 (56.03%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MK  KGK   + +KEALKPVDDRKVGKRKA                             S
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PXXXXXXXXXXXXXXXXXXXXXXXXXXS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAP 219
           AFFVFL            E+FR  +K+ENPNVKAVSAVGKAGGQ+W+S++  EKAP
Sbjct: 61  AFFVFL------------EDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAP 102

[Close]
BLAST of Carg19997 vs. TAIR10
Match: AT1G20696.2 (high mobility group B3)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-15
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 0 

Query: 162 SAFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEA 221
           SAFFVF+            E+FR  YK E+P  K+V+AVGKAGG++W+SL+  EKAPY A
Sbjct: 40  SAFFVFM------------EDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVA 99

Query: 222 KAAKRKAEYEKLMRAYDSK 241
           KA KRK EYEK M+AY+ K
Sbjct: 100 KADKRKVEYEKNMKAYNKK 106

[Close]
BLAST of Carg19997 vs. TAIR10
Match: AT4G35570.1 (high mobility group B5)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-14
Identity = 46/124 (37.10%), Postives = 74/124 (59.68%), Query Frame = 0 

Query: 137 DKGIKRPTKKELKALKDPNKPKRPPSAFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKA 196
           D  +K    K  K  KDPN+PK+PPS FFVFL            ++FR+E+   NP+ K+
Sbjct: 14  DDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFL------------DDFRKEFNLANPDNKS 73

Query: 197 VSAVGKAGGQRWQSLTHDEKAPYEAKAAKRKAEYEKLMRAYDSKKA----SEADDEELER 256
           V  VG+A G++W+++T +E+AP+ AK+  +K EY   M+ Y+ + A    +  DDE+ E+
Sbjct: 74  VGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANGNKTTGDDEKQEK 125

[Close]
BLAST of Carg19997 vs. Swiss-Prot
Match: sp|P26585|HMGL_SOYBN (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-21
Identity = 70/140 (50.00%), Postives = 88/140 (62.86%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MKG K K  S+ +   L       V K+ AA KA    ++P  K  KA KDPNKPKRPPS
Sbjct: 1   MKGGKSKTESKRADPKL------AVNKKGAATKA----RKPAGKG-KAAKDPNKPKRPPS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVF+            EEFR+ + +E+P  KAVSAVGKA G +W++++  EKAPY AK
Sbjct: 61  AFFVFM------------EEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAK 117

Query: 223 AAKRKAEYEKLMRAYDSKKA 243
           + KRK EYEK MRAY+ K+A
Sbjct: 121 SEKRKVEYEKNMRAYNKKQA 117

[Close]
BLAST of Carg19997 vs. Swiss-Prot
Match: sp|P40619|HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-20
Identity = 60/116 (51.72%), Postives = 77/116 (66.38%), Query Frame = 0 

Query: 126 KVGKRKAAIKADKGIKR---PTKKELKALKDPNKPKRPPSAFFVFLKFSDLFEILYNSEE 185
           K GK KA       +K+    TKK  KA+KDPNKPKRPPSAFFVF+            E+
Sbjct: 2   KGGKSKAKSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFM------------ED 61

Query: 186 FRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAKAAKRKAEYEKLMRAYD 239
           FR+ YK ++PN K+V+ VGKAGG +W+ LT  EKAP+ +KA KRK EYEK ++AY+
Sbjct: 62  FRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYN 105

[Close]
BLAST of Carg19997 vs. Swiss-Prot
Match: sp|O49596|HMGB2_ARATH (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.4e-20
Identity = 62/138 (44.93%), Postives = 80/138 (57.97%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MKG K K  +R SK ++     +  G+ KA                 A KDPNKPKRP S
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKA-----------------AAKDPNKPKRPAS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVF+            E+FR+ +K+ENP  K+V+ VGKA G +W+SL+  EKAPY AK
Sbjct: 61  AFFVFM------------EDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAK 109

Query: 223 AAKRKAEYEKLMRAYDSK 241
           A KRK EYEK ++AY+ K
Sbjct: 121 AEKRKVEYEKNIKAYNKK 109

[Close]
BLAST of Carg19997 vs. Swiss-Prot
Match: sp|Q42344|HMGB4_ARATH (High mobility group B protein 4 OS=Arabidopsis thaliana OX=3702 GN=HMGB4 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.9e-19
Identity = 64/137 (46.72%), Postives = 88/137 (64.23%), Query Frame = 0 

Query: 126 KVGKRKA-AIKADKGIK-RPTKKELKALKDPNKPKRPPSAFFVFLKFSDLFEILYNSEEF 185
           K G+ KA A   D+ +K R  K   K  KDPN+PKRPPSAFFVFL            E+F
Sbjct: 2   KGGESKAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFL------------EDF 61

Query: 186 RQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAKAAKRKAEYEKLMRAYDSKKAS 245
           R+E+   NPN K+V+ VGKA G RW+++T ++KAPY AKA  RK EY K ++ Y+ K AS
Sbjct: 62  RKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLAS 121

Query: 246 --EADDEELERSKSEVN 259
               ++++ ++SKSEV+
Sbjct: 122 GTNREEDDSDKSKSEVD 126

[Close]
BLAST of Carg19997 vs. Swiss-Prot
Match: sp|O49595|HMGB1_ARATH (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-16
Identity = 58/118 (49.15%), Postives = 67/118 (56.78%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MK  KGK   + +KEALKPVDDRKVGKRKA                             S
Sbjct: 1   MKTAKGKDKVKTTKEALKPVDDRKVGKRKA--PXXXXXXXXXXXXXXXXXXXXXXXXXXS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYE 221
           AFFVFL            E+FR  +K+ENPNVKAVSAVGKAGGQ+W+S++  EKAPYE
Sbjct: 61  AFFVFL------------EDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYE 104

[Close]
BLAST of Carg19997 vs. TrEMBL
Match: tr|A0A0A0L1B2|A0A0A0L1B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 5.2e-52
Identity = 114/137 (83.21%), Postives = 121/137 (88.32%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MKG KGKGTSRVSKEALKPVDDRKVGKRKA +KADKGIKRPTKK+LKA KDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPPS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVFL            EEFR+EYKRENPNVKAVSAVGKAGG++W+SL+H EKAPYEAK
Sbjct: 61  AFFVFL------------EEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAK 120

Query: 223 AAKRKAEYEKLMRAYDS 240
           AAKRKAEYEKLMRAYDS
Sbjct: 121 AAKRKAEYEKLMRAYDS 125

[Close]
BLAST of Carg19997 vs. TrEMBL
Match: tr|A0A1S3BML2|A0A1S3BML2_CUCME (high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.0e-51
Identity = 113/137 (82.48%), Postives = 120/137 (87.59%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MKG KGKGTSRVSKEALKPVDDRKVGKRKA +KADKG KRPTKK+LKA KDPNKPKRPPS
Sbjct: 1   MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVVKADKGTKRPTKKDLKAKKDPNKPKRPPS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVFL            EEFR+EYKRENPNVKAVSAVGKAGG++W+SL+H EKAPYEAK
Sbjct: 61  AFFVFL------------EEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEKAPYEAK 120

Query: 223 AAKRKAEYEKLMRAYDS 240
           AAKRKAEYEKLMRAYDS
Sbjct: 121 AAKRKAEYEKLMRAYDS 125

[Close]
BLAST of Carg19997 vs. TrEMBL
Match: tr|A0A2R6QK74|A0A2R6QK74_ACTCH (High mobility group B protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc16794 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.9e-39
Identity = 97/146 (66.44%), Postives = 113/146 (77.40%), Query Frame = 0 

Query: 103 MKGPKGKG-TSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPP 162
           MK  +GKG T++VSKEALK VDDRKVGKRKAAIKADK  K+P KK   A KDPNKPKRPP
Sbjct: 1   MKPARGKGATNKVSKEALKAVDDRKVGKRKAAIKADKSSKKPVKKGKTATKDPNKPKRPP 60

Query: 163 SAFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEA 222
           SAFFVFL            EEFR+ +K+ENPNVKAVSAVGKAGG++W+S++  EK PY  
Sbjct: 61  SAFFVFL------------EEFRKTFKKENPNVKAVSAVGKAGGEKWKSMSVAEKTPYGV 120

Query: 223 KAAKRKAEYEKLMRAYDSKKASEADD 248
           KAAK+K+EYEKLM AY+ K+ S ADD
Sbjct: 121 KAAKKKSEYEKLMNAYNKKQESMADD 134

[Close]
BLAST of Carg19997 vs. TrEMBL
Match: tr|A0A1Q3C5V8|A0A1Q3C5V8_CEPFO (HMG_box domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18957 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.2e-38
Identity = 94/136 (69.12%), Postives = 105/136 (77.21%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MK  KGKGT+R +KE LKP DDRKVGKRKA    DK  KRPTKKE KA KDPNKPKRPPS
Sbjct: 1   MKTAKGKGTARTTKEVLKPTDDRKVGKRKAPAIVDKSSKRPTKKE-KAKKDPNKPKRPPS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVFL            EEFR  +K+E+P VKAVSAVGKAGGQ+W+S+++ EKAPYEAK
Sbjct: 61  AFFVFL------------EEFRLTFKKEHPTVKAVSAVGKAGGQKWKSMSNAEKAPYEAK 120

Query: 223 AAKRKAEYEKLMRAYD 239
           AAKRK EYEKLM AY+
Sbjct: 121 AAKRKVEYEKLMNAYN 123

[Close]
BLAST of Carg19997 vs. TrEMBL
Match: tr|A0A2I4F3P9|A0A2I4F3P9_9ROSI (high mobility group B protein 1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108995197 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.6e-37
Identity = 91/136 (66.91%), Postives = 109/136 (80.15%), Query Frame = 0 

Query: 103 MKGPKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKGIKRPTKKELKALKDPNKPKRPPS 162
           MK  KGKG ++ SKE+LKPVDDRKVGKRKAA KADK   +  KK+  A KDPNKPKRPPS
Sbjct: 1   MKSSKGKGAAKYSKESLKPVDDRKVGKRKAATKADKSSSQ--KKQRDAKKDPNKPKRPPS 60

Query: 163 AFFVFLKFSDLFEILYNSEEFRQEYKRENPNVKAVSAVGKAGGQRWQSLTHDEKAPYEAK 222
           AFFVFL            EEFR+++K+E+P+VKAVSAVGKAGGQRW+S++  EKAPYEAK
Sbjct: 61  AFFVFL------------EEFRKDFKKEHPDVKAVSAVGKAGGQRWKSMSDAEKAPYEAK 120

Query: 223 AAKRKAEYEKLMRAYD 239
           AAKRK++YEKLM+AY+
Sbjct: 121 AAKRKSDYEKLMKAYN 122

The following BLAST results are available for this feature:
BLAST of Carg19997 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023545143.16.6e-6792.31high mobility group B protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022949766.15.6e-6691.67high mobility group B protein 1-like [Cucurbita moschata][more]
XP_022978298.18.0e-6592.11high mobility group B protein 1-like [Cucurbita maxima][more]
XP_011653690.17.8e-5283.21PREDICTED: high mobility group B protein 1 [Cucumis sativus] >XP_011653691.1 PRE... [more]
XP_008449957.13.0e-5182.48PREDICTED: high mobility group B protein 1 [Cucumis melo] >XP_008449965.1 PREDIC... [more]
BLAST of Carg19997 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G20693.13.0e-2144.93high mobility group B2[more]
AT2G17560.13.3e-2046.72high mobility group B4[more]
AT3G51880.21.7e-1648.28high mobility group B1[more]
AT1G20696.21.4e-1555.70high mobility group B3[more]
AT4G35570.11.6e-1437.10high mobility group B5[more]
BLAST of Carg19997 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P26585|HMGL_SOYBN2.2e-2150.00HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1[more]
sp|P40619|HMGL_IPONI1.4e-2051.72HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1[more]
sp|O49596|HMGB2_ARATH5.4e-2044.93High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV... [more]
sp|Q42344|HMGB4_ARATH5.9e-1946.72High mobility group B protein 4 OS=Arabidopsis thaliana OX=3702 GN=HMGB4 PE=1 SV... [more]
sp|O49595|HMGB1_ARATH1.6e-1649.15High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV... [more]
BLAST of Carg19997 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L1B2|A0A0A0L1B2_CUCSA5.2e-5283.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G309150 PE=4 SV=1[more]
tr|A0A1S3BML2|A0A1S3BML2_CUCME2.0e-5182.48high mobility group B protein 1 OS=Cucumis melo OX=3656 GN=LOC103491684 PE=4 SV=... [more]
tr|A0A2R6QK74|A0A2R6QK74_ACTCH2.9e-3966.44High mobility group B protein OS=Actinidia chinensis var. chinensis OX=1590841 G... [more]
tr|A0A1Q3C5V8|A0A1Q3C5V8_CEPFO3.2e-3869.12HMG_box domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_... [more]
tr|A0A2I4F3P9|A0A2I4F3P9_9ROSI1.6e-3766.91high mobility group B protein 1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036910HMG_box_dom_sf
IPR009071HMG_box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19997-RACarg19997-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 156..239
e-value: 6.4E-18
score: 75.5
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 180..237
e-value: 1.4E-14
score: 54.2
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 157..238
score: 16.064
IPR036910High mobility group box domain superfamilyGENE3DG3DSA:1.10.30.10coord: 150..240
e-value: 2.2E-23
score: 84.4
IPR036910High mobility group box domain superfamilySUPERFAMILYSSF47095HMG-boxcoord: 144..237
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..286
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 263..286
NoneNo IPR availablePANTHERPTHR13711:SF292HIGH MOBILITY GROUP B PROTEIN 1coord: 103..285
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 103..285
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 157..235
e-value: 2.11005E-18
score: 76.1273

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19997Cla018108Watermelon (97103) v1carwmB0554
Carg19997Csa4G309150Cucumber (Chinese Long) v2carcuB0585
Carg19997CSPI04G15870Wild cucumber (PI 183967)carcpiB0591
Carg19997Cucsa.067200Cucumber (Gy14) v1carcgyB0632
Carg19997CmaCh07G010510Cucurbita maxima (Rimu)carcmaB0778
Carg19997CmoCh03G003650Cucurbita moschata (Rifu)carcmoB0753
Carg19997CmoCh07G011010Cucurbita moschata (Rifu)carcmoB0757
Carg19997Lsi01G015420Bottle gourd (USVL1VR-Ls)carlsiB503
Carg19997Cp4.1LG19g02890Cucurbita pepo (Zucchini)carcpeB0789
Carg19997Cp4.1LG10g07980Cucurbita pepo (Zucchini)carcpeB0785
Carg19997CsGy4G015160Cucumber (Gy14) v2carcgybB0561
Carg19997CsaV3_4G026240Cucumber (Chinese Long) v3carcucB0592
Carg19997Cla97C04G073670Watermelon (97103) v2carwmbB0583
Carg19997Bhi03G001681Wax gourdcarwgoB0666
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19997Carg13277Silver-seed gourdcarcarB514
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19997Cucurbita maxima (Rimu)carcmaB0776
Carg19997Silver-seed gourdcarcarB022
Carg19997Silver-seed gourdcarcarB195
Carg19997Silver-seed gourdcarcarB301
Carg19997Silver-seed gourdcarcarB517
Carg19997Cucumber (Gy14) v2carcgybB0560
Carg19997Cucumber (Gy14) v2carcgybB0562
Carg19997Cucumber (Gy14) v1carcgyB0634
Carg19997Cucurbita maxima (Rimu)carcmaB0777
Carg19997Cucurbita maxima (Rimu)carcmaB0773
Carg19997Cucurbita maxima (Rimu)carcmaB0774
Carg19997Cucurbita maxima (Rimu)carcmaB0775
Carg19997Cucurbita moschata (Rifu)carcmoB0751
Carg19997Cucurbita moschata (Rifu)carcmoB0752
Carg19997Cucurbita moschata (Rifu)carcmoB0754
Carg19997Cucurbita moschata (Rifu)carcmoB0756
Carg19997Cucurbita pepo (Zucchini)carcpeB0786
Carg19997Cucurbita pepo (Zucchini)carcpeB0790
Carg19997Cucurbita pepo (Zucchini)carcpeB0791
Carg19997Cucurbita pepo (Zucchini)carcpeB0792
Carg19997Wild cucumber (PI 183967)carcpiB0590
Carg19997Wild cucumber (PI 183967)carcpiB0592
Carg19997Cucumber (Chinese Long) v2carcuB0584
Carg19997Cucumber (Chinese Long) v2carcuB0586
Carg19997Cucumber (Chinese Long) v3carcucB0594
Carg19997Bottle gourd (USVL1VR-Ls)carlsiB505
Carg19997Melon (DHL92) v3.5.1carmeB0559
Carg19997Melon (DHL92) v3.5.1carmeB0560
Carg19997Melon (DHL92) v3.6.1carmedB0565
Carg19997Melon (DHL92) v3.6.1carmedB0566
Carg19997Watermelon (Charleston Gray)carwcgB0540
Carg19997Watermelon (Charleston Gray)carwcgB0541
Carg19997Watermelon (Charleston Gray)carwcgB0542
Carg19997Watermelon (97103) v1carwmB0553
Carg19997Watermelon (97103) v1carwmB0555
Carg19997Watermelon (97103) v2carwmbB0581
Carg19997Watermelon (97103) v2carwmbB0582
Carg19997Wax gourdcarwgoB0664
Carg19997Wax gourdcarwgoB0665