Carg19980 (gene) Silver-seed gourd

Overview
NameCarg19980
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionmitogen-activated protein kinase-binding protein 1 isoform X4
LocationCucurbita_argyrosperma_scaffold_167 : 214060 .. 214485 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAAGGTCAGATGACTCGATTACTATATTTTCCTCACCCCATGTTCTATATTGCTTTTGCATTCAGGGCCTCAACCTACAGTATTTATGTGGGATTTAGATGGCATGGTCTTTGCATCAGAACTTGAAGGTCATCTGTACGGTATTGCTTGCCCTGCTTTTTCCCCTGATGCTAGTTTTTTTCTTCTTTGGTTTCGGTTCTGCTGCTACTTGTTCACTTTTCCTTTTTCCAGCTTAAATAATTCGCTATTCTTTATTTATACGAGGGGAATATAGATTTGGCGGACTACGGCGTTGCTAGCAAAGCTCAAACCATGTTCATCTTAGACGGACATCTCATCTGTTTCCTTCTCATCAGATTCAAAACCTCTTTGAACTGCTGGGAAGAAGCACATGAAGTTCTGGACAATCACATCTCCTAG

mRNA sequence

ATGGTGAAAGGGCCTCAACCTACAGTATTTATGTGGGATTTAGATGGCATGGTCTTTGCATCAGAACTTGAAGGTCATCTGTACGATTTGGCGGACTACGGCGTTGCTAGCAAAGCTCAAACCATGTTCATCTTAGACGGACATCTCATCTGTTTCCTTCTCATCAGATTCAAAACCTCTTTGAACTGCTGGGAAGAAGCACATGAAGTTCTGGACAATCACATCTCCTAG

Coding sequence (CDS)

ATGGTGAAAGGGCCTCAACCTACAGTATTTATGTGGGATTTAGATGGCATGGTCTTTGCATCAGAACTTGAAGGTCATCTGTACGATTTGGCGGACTACGGCGTTGCTAGCAAAGCTCAAACCATGTTCATCTTAGACGGACATCTCATCTGTTTCCTTCTCATCAGATTCAAAACCTCTTTGAACTGCTGGGAAGAAGCACATGAAGTTCTGGACAATCACATCTCCTAG

Protein sequence

MVKGPQPTVFMWDLDGMVFASELEGHLYDLADYGVASKAQTMFILDGHLICFLLIRFKTSLNCWEEAHEVLDNHIS
Homology
[Close]
BLAST of Carg19980 vs. NCBI nr
Match: XP_011653680.1 (PREDICTED: mitogen-activated protein kinase-binding protein 1 isoform X2 [Cucumis sativus] >KGN54353.1 hypothetical protein Csa_4G307950 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 4   GPQPTVFMWDLDGMVFASELEGHLYDLADYGVASKAQTMFILDGHLICF------LLIRF 63
           GPQP VF+W+L GMVF SEL+GHLY +A    +   + +  + G++  +      LL + 
Sbjct: 90  GPQPAVFVWELSGMVFVSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRTTALLTKL 149

[Close]
BLAST of Carg19980 vs. NCBI nr
Match: XP_011653679.1 (PREDICTED: mitogen-activated protein kinase-binding protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 4   GPQPTVFMWDLDGMVFASELEGHLYDLADYGVASKAQTMFILDGHLICF------LLIRF 63
           GPQP VF+W+L GMVF SEL+GHLY +A    +   + +  + G++  +      LL + 
Sbjct: 90  GPQPAVFVWELSGMVFVSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRTTALLTKL 149

[Close]
BLAST of Carg19980 vs. NCBI nr
Match: XP_022151492.1 (mitogen-activated protein kinase-binding protein 1 isoform X1 [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 4   GPQPTVFMWDLDGMVFASELEGHLYDLADYGVASKAQTMFILDGHLICF------LLIRF 63
           GPQP VF+WDL GM F SEL+GHLY +A    +   + +  + G++  +      LL + 
Sbjct: 90  GPQPAVFVWDLAGMAFLSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRSTVLLTKL 149

[Close]
BLAST of Carg19980 vs. NCBI nr
Match: XP_022151493.1 (mitogen-activated protein kinase-binding protein 1 isoform X2 [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 4   GPQPTVFMWDLDGMVFASELEGHLYDLADYGVASKAQTMFILDGHLICF------LLIRF 63
           GPQP VF+WDL GM F SEL+GHLY +A    +   + +  + G++  +      LL + 
Sbjct: 90  GPQPAVFVWDLAGMAFLSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRSTVLLTKL 149

[Close]
BLAST of Carg19980 vs. NCBI nr
Match: XP_022931910.1 (mitogen-activated protein kinase-binding protein 1 [Cucurbita moschata])

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 26/66 (39.39%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 4   GPQPTVFMWDLDGMVFASELEGHLYDLADYGVASKAQTMFILDGHLICF------LLIRF 63
           GPQP VF+WDL GM F SEL+GHLY +A    +   + +  + G++  +      LL + 
Sbjct: 90  GPQPAVFVWDLAGMAFLSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRTSMLLTKL 149

[Close]
BLAST of Carg19980 vs. TrEMBL
Match: tr|A0A0A0KXV9|A0A0A0KXV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307950 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-04
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 0 

Query: 4   GPQPTVFMWDLDGMVFASELEGHLYDLADYGVASKAQTMFILDGHLICF------LLIRF 63
           GPQP VF+W+L GMVF SEL+GHLY +A    +   + +  + G++  +      LL + 
Sbjct: 90  GPQPAVFVWELSGMVFVSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRTTALLTKL 149

[Close]
BLAST of Carg19980 vs. TrEMBL
Match: tr|A0A1S3BL76|A0A1S3BL76_CUCME (mitogen-activated protein kinase-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491042 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-04
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 4   GPQPTVFMWDLDGMVFASELEGHLYDLADYGVASKAQTMFILDGHLICF------LLIRF 63
           GPQP VF+W+L GM F SEL+GHLY +A    +   + +  + G++  +      LL + 
Sbjct: 90  GPQPAVFVWELSGMAFVSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRTTALLTKL 149

[Close]
BLAST of Carg19980 vs. TrEMBL
Match: tr|A0A1S3BL95|A0A1S3BL95_CUCME (mitogen-activated protein kinase-binding protein 1 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103491042 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-04
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 4   GPQPTVFMWDLDGMVFASELEGHLYDLADYGVASKAQTMFILDGHLICF------LLIRF 63
           GPQP VF+W+L GM F SEL+GHLY +A    +   + +  + G++  +      LL + 
Sbjct: 90  GPQPAVFVWELSGMAFVSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRTTALLTKL 149

[Close]
BLAST of Carg19980 vs. TrEMBL
Match: tr|A0A1S3BM41|A0A1S3BM41_CUCME (mitogen-activated protein kinase-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491042 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-04
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 4   GPQPTVFMWDLDGMVFASELEGHLYDLADYGVASKAQTMFILDGHLICF------LLIRF 63
           GPQP VF+W+L GM F SEL+GHLY +A    +   + +  + G++  +      LL + 
Sbjct: 90  GPQPAVFVWELSGMAFVSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRTTALLTKL 149

[Close]
BLAST of Carg19980 vs. TrEMBL
Match: tr|A0A1S3BM48|A0A1S3BM48_CUCME (mitogen-activated protein kinase-binding protein 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491042 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-04
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 4   GPQPTVFMWDLDGMVFASELEGHLYDLADYGVASKAQTMFILDGHLICF------LLIRF 63
           GPQP VF+W+L GM F SEL+GHLY +A    +   + +  + G++  +      LL + 
Sbjct: 90  GPQPAVFVWELSGMAFVSELKGHLYGVACLAFSPDGKYLVSVGGYIYIWDWRTTALLTKL 149

The following BLAST results are available for this feature:
BLAST of Carg19980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653680.11.6e-0439.39PREDICTED: mitogen-activated protein kinase-binding protein 1 isoform X2 [Cucumi... [more]
XP_011653679.11.6e-0439.39PREDICTED: mitogen-activated protein kinase-binding protein 1 isoform X1 [Cucumi... [more]
XP_022151492.13.6e-0439.39mitogen-activated protein kinase-binding protein 1 isoform X1 [Momordica charant... [more]
XP_022151493.13.6e-0439.39mitogen-activated protein kinase-binding protein 1 isoform X2 [Momordica charant... [more]
XP_022931910.13.6e-0439.39mitogen-activated protein kinase-binding protein 1 [Cucurbita moschata][more]
BLAST of Carg19980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg19980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg19980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KXV9|A0A0A0KXV9_CUCSA1.1e-0439.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307950 PE=4 SV=1[more]
tr|A0A1S3BL76|A0A1S3BL76_CUCME3.1e-0437.88mitogen-activated protein kinase-binding protein 1 isoform X1 OS=Cucumis melo OX... [more]
tr|A0A1S3BL95|A0A1S3BL95_CUCME3.1e-0437.88mitogen-activated protein kinase-binding protein 1 isoform X4 OS=Cucumis melo OX... [more]
tr|A0A1S3BM41|A0A1S3BM41_CUCME3.1e-0437.88mitogen-activated protein kinase-binding protein 1 isoform X2 OS=Cucumis melo OX... [more]
tr|A0A1S3BM48|A0A1S3BM48_CUCME3.1e-0437.88mitogen-activated protein kinase-binding protein 1 isoform X3 OS=Cucumis melo OX... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19980-RACarg19980-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg19980Cucurbita maxima (Rimu)carcmaB0776
Carg19980Silver-seed gourdcarcarB022
Carg19980Silver-seed gourdcarcarB098
Carg19980Silver-seed gourdcarcarB195
Carg19980Silver-seed gourdcarcarB301
Carg19980Silver-seed gourdcarcarB514
Carg19980Silver-seed gourdcarcarB517
Carg19980Cucumber (Gy14) v2carcgybB0560
Carg19980Cucumber (Gy14) v2carcgybB0561
Carg19980Cucumber (Gy14) v2carcgybB0562
Carg19980Cucumber (Gy14) v1carcgyB0632
Carg19980Cucumber (Gy14) v1carcgyB0634
Carg19980Cucumber (Gy14) v1carcgyB0635
Carg19980Cucurbita maxima (Rimu)carcmaB0777
Carg19980Cucurbita maxima (Rimu)carcmaB0773
Carg19980Cucurbita maxima (Rimu)carcmaB0774
Carg19980Cucurbita maxima (Rimu)carcmaB0775
Carg19980Cucurbita maxima (Rimu)carcmaB0778
Carg19980Cucurbita moschata (Rifu)carcmoB0751
Carg19980Cucurbita moschata (Rifu)carcmoB0752
Carg19980Cucurbita moschata (Rifu)carcmoB0753
Carg19980Cucurbita moschata (Rifu)carcmoB0754
Carg19980Cucurbita moschata (Rifu)carcmoB0755
Carg19980Cucurbita moschata (Rifu)carcmoB0756
Carg19980Cucurbita moschata (Rifu)carcmoB0757
Carg19980Cucurbita pepo (Zucchini)carcpeB0785
Carg19980Cucurbita pepo (Zucchini)carcpeB0786
Carg19980Cucurbita pepo (Zucchini)carcpeB0790
Carg19980Cucurbita pepo (Zucchini)carcpeB0791
Carg19980Cucurbita pepo (Zucchini)carcpeB0792
Carg19980Wild cucumber (PI 183967)carcpiB0591
Carg19980Wild cucumber (PI 183967)carcpiB0592
Carg19980Cucumber (Chinese Long) v2carcuB0584
Carg19980Cucumber (Chinese Long) v2carcuB0585
Carg19980Cucumber (Chinese Long) v2carcuB0586
Carg19980Cucumber (Chinese Long) v3carcucB0594
Carg19980Cucumber (Chinese Long) v3carcucB0591
Carg19980Cucumber (Chinese Long) v3carcucB0592
Carg19980Bottle gourd (USVL1VR-Ls)carlsiB503
Carg19980Bottle gourd (USVL1VR-Ls)carlsiB504
Carg19980Bottle gourd (USVL1VR-Ls)carlsiB505
Carg19980Melon (DHL92) v3.5.1carmeB0559
Carg19980Melon (DHL92) v3.5.1carmeB0560
Carg19980Melon (DHL92) v3.5.1carmeB0561
Carg19980Melon (DHL92) v3.6.1carmedB0565
Carg19980Melon (DHL92) v3.6.1carmedB0566
Carg19980Melon (DHL92) v3.6.1carmedB0567
Carg19980Watermelon (Charleston Gray)carwcgB0540
Carg19980Watermelon (Charleston Gray)carwcgB0541
Carg19980Watermelon (Charleston Gray)carwcgB0542
Carg19980Watermelon (Charleston Gray)carwcgB0543
Carg19980Watermelon (97103) v1carwmB0553
Carg19980Watermelon (97103) v1carwmB0554
Carg19980Watermelon (97103) v1carwmB0555
Carg19980Watermelon (97103) v2carwmbB0581
Carg19980Watermelon (97103) v2carwmbB0582
Carg19980Watermelon (97103) v2carwmbB0583
Carg19980Wax gourdcarwgoB0664
Carg19980Wax gourdcarwgoB0665
Carg19980Wax gourdcarwgoB0666