Carg19972 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19972
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein SSUH2 homolog
Location	Cucurbita_argyrosperma_scaffold_167 : 157769 .. 160856 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGTAGGTAACGATGTCTGTGAAGACTGTATTTATGGTGGAATACTCTGGATACTCTTACTAGAGAAGGGATGTCTAATTGTAAAACAAGAAAAACCGACCATAATTAAAGCGGTGCGATCGATGAGCGAAACAATGAACCGACATTGGAGTCATGGGAATTGGAGTGAACATCTGAGTAATTCCCAACCTCTTTATGTACCTTCTAAAGAATCAAGGAAAAGGATTCCTCATTCAGAAACCATTGAGAAGTGTTCAGGTGAGGATTCTGGAAGTTAATTTAGTAGCTAGTTGAATGCTTTCCCTTTTGAACTTAATAGGAATTTCTGATTGAACTTAATATGGATACTACTAAATCTAATTTCCTTTTGGCTTCCTTTCGGACCTTTCCCTCAAGTGTTTTAAAAAATGCGTCTCTAGGAGAGATTCCACACCTTATAAAACAATTCCGTATCTCCTCCTTAACACTAGGGGATCTCACAATCCACCCCCTTTCGAGGCCAGCGTCCTTTTGCACTTTTTACCTGTCTCACAATCGAGCTGTAGGAACCCTCCCAATCCAATTTCCTTTCAAGGCCTCAGTGCTCCCTTTTATGAGCCACACCCCTCGTGTCCACCCCCCATTGGGGCCCGTCTACTTAATGGCATATCGCCTGGTGCTGGCTCTAATCATTCAATGTAACTGCCCAGCGTCACGCTAGCAATATTTTTCTCTTTAGAAGCTCTTCCCTATCGGAACATAATACACTCCAAACGGTCTTTAAAACGCCCGTTCAATTTTCATTTCTCCTTCCAATCGATATAGATTCTCAAACAACTACTTAGTTGCGAAATTTTGGGGTTAAAGTGAATGCACAACGCAGCTTACTTATGCTATGTTAGGCTCACATAGCATTCGTCTTTAACTACTCGTGTTTGCAAATTCTCAGTCTGTCTGCACCGACGAGGAATCTCGTATCGTTTTTTATTCCGACATGTAACCCAAATCAAGAACCTGGATTTTACATTGGAAATCATATGGTCCAATGCCCTTCTTGTTATGGTCGAGGTTTGATAGCTCATCGAGATGGATCAGACTCCATGTAAGTTATTTAAGGATAGATTCTCATGTCTTGTGCATTTATTTGATTATTGGCTTCTTGGTCTATAGCTATGATAGAATGGGCTTCGAGCTCAAACGTCCCTTACCTTGGCATTTGATAATCTGAGCCTAAAATTTATCTGCTGCTGCTGGGTGACTGATAACTTCCTGTTTGACATATTATGTTTCGGTATGCTGAAAATTGCTACGTGCAGTGTGCATTGAGGCCAGGAAAACTTCACTTGTGCAACCACTCGCGACCTCCTCCGGGGCCTTAATTAAGTCCGTGAGACATGCAACATCAGTTCTCTCCTGACCGCAATGCCTGTGTTAAGCTGAGTGTGCATTCTAATATACATTTTAGAACGCTGTTTCTAGCATATAGTTTTACTTCATTGGAAGCAAGAGTAACATTCATTCGATCGAGTGAAATACGAACGGAAACAAGGATTCCCAAGTGAGCGAAGAGGGATTCCAAAAAAAATTCCCCCAGTTTTGTTTAATATAAAGAATCCTTATTACAACAGTGGCAAAGCTCTTTCGAAGAAAAGCATAAAACTCTATTTTAACGGCCAACCCGTCTGTAGGCATACAAGATTCATATCGTCTTCTTGGCTTTTTCAGGCTTTCCCTCAAAATTCTTATAACACGATTATTCATGAGGTTTCCACACCGCTTATAAAAAAATGTTTTGTCTCCCTCCCCCATGTAGGATCTCGGCAATCCACCCCCTCCGGGGGCGCCGCGTACCTTGCTGGCACTCATTGGCCTGCTCCATCGAATGTGGGATCCCCTAATTTCCCACCCCCTTCGAGGTCCAACATCCTGTTCCACACCGCCGTCCACCCCTCGGAGTTCAACTCTCTCGCTGCACACTCGCACCGACTGCTGGCTCTTGGTTCCATTTTCTTACAGCCCAAGCCCCACCTAATCCACACACTCACTCTTTATCTTTTATGAGCTTTTGACTTCTGGGTCTTCTGCCTCAAGTTTTAAAATGCGTCTACTAGGGAGAGGTTTCCACTCCCTTATAATGAATGCGTCGTTTTTCTCCCCAACCGATGTGAGATCTCACAATGATAGTTTGAAATATTATACATGCTTCTGGATTTATCGTGGGAAATTCTTCAGTTCCTTCTAATTCATACTTCCCAAAAGAGTCATTTAGCAGTTCCATACACCGTTGAACCAAAGCATATATTGAAGGCAACAAAAAAAAAAAGCTGCCACGGTCCATGACTTTTCAGTTATATTTTATATTCTCTTTTGCTGAAAAATGTGCACAACAACAACACGAAAGGAATTCTTCTTTTACAGGAGGACACTTTCGACACGAAAAGTAAGCGCTATGAGCGGAGCAGCATCTGTACCAGACGAAGTGTTCCACAGAGCCAAAGGTGTCCAATTATGCAACACTCAAGCCTACCAATGTACTCCAGCTTTCTTTGCAGATTCCTTCTTCCTCAACAAGTTCTCTTCTGAAGTGATTGCAGATCGAGCATCCATCGCTCCCACTGCACGTGTGATATGTGAACGACATATAATCTCAGTCGTACCGGTGACCCGCGTCACAATGGCTGACCATGGAAGGTCCTTCAGTTTCTACATTGTAGGTTTCAGCAAGGAAGTTTACTTGAAGGACTACTACCCCTCAAGGTTCTGCTGGGGGCTGTGCCCTTGCTTGGAGTGGCTGAGGTTGTAAAGAAAACCACATGGTGTGATGATGCACATGGCTGGCTGCCAGTTAGAATTGTATTGCGACTCTGAATTCTTCTCATGGTGGGCTTCTTCTTTGTTGTGTAATTTTATTCTCATTGTGCCATGGGTTATCTATCTTTTTGGCTAAGTCTCCTTTCTTTTTGCTTTGTGCTTTTCAGAGTGACTGTGAGAACCCCCTCTGTTTTGCTTTGCTTTGCTTCAAAGTTTGGCTTCAATTACATCACATTCACTTCTCTTTCAAGCTACATCTTCATGGGACCAGAATCTAAAACCGCTTTTTTCTAG

mRNA sequence

ATGCTCGTAGGTAACGATGTCTGTGAAGACTGTATTTATGGTGGAATACTCTGGATACTCTTACTAGAGAAGGGATGTCTAATTGTAAAACAAGAAAAACCGACCATAATTAAAGCGGTGCGATCGATGAGCGAAACAATGAACCGACATTGGAGTCATGGGAATTGGAGTGAACATCTGAGTAATTCCCAACCTCTTTATGTACCTTCTAAAGAATCAAGGAAAAGGATTCCTCATTCAGAAACCATTGAGAAGTGTTCAGCATTCGTCTTTAACTACTCGTGTTTGCAAATTCTCAGTCTGTCTGCACCGACGAGGAATCTCGTATCGTTTTTTATTCCGACATGTAACCCAAATCAAGAACCTGGATTTTACATTGGAAATCATATGGTCCAATGCCCTTCTTGTTATGGTCGAGGTTTGATAGCTCATCGAGATGGATCAGACTCCATGAGGACACTTTCGACACGAAAAGTAAGCGCTATGAGCGGAGCAGCATCTGTACCAGACGAAGTGTTCCACAGAGCCAAAGGTGTCCAATTATGCAACACTCAAGCCTACCAATGTACTCCAGCTTTCTTTGCAGATTCCTTCTTCCTCAACAAGTTCTCTTCTGAAGTGATTGCAGATCGAGCATCCATCGCTCCCACTGCACGTGTGATATGTGAACGACATATAATCTCAGTCGTACCGGTGACCCGCGTCACAATGGCTGACCATGGAAGGTCCTTCAGTTTCTACATTGTAGGTTTCAGCAAGGAAGTTTACTTGAAGGACTACTACCCCTCAAGGTTCTGCTGGGGGCTGTGCCCTTGCTTGGAGTGGCTGAGAGTGACTGTGAGAACCCCCTCTGTTTTGCTTTGCTTTGCTTCAAAGTTTGGCTTCAATTACATCACATTCACTTCTCTTTCAAGCTACATCTTCATGGGACCAGAATCTAAAACCGCTTTTTTCTAG

Coding sequence (CDS)

ATGCTCGTAGGTAACGATGTCTGTGAAGACTGTATTTATGGTGGAATACTCTGGATACTCTTACTAGAGAAGGGATGTCTAATTGTAAAACAAGAAAAACCGACCATAATTAAAGCGGTGCGATCGATGAGCGAAACAATGAACCGACATTGGAGTCATGGGAATTGGAGTGAACATCTGAGTAATTCCCAACCTCTTTATGTACCTTCTAAAGAATCAAGGAAAAGGATTCCTCATTCAGAAACCATTGAGAAGTGTTCAGCATTCGTCTTTAACTACTCGTGTTTGCAAATTCTCAGTCTGTCTGCACCGACGAGGAATCTCGTATCGTTTTTTATTCCGACATGTAACCCAAATCAAGAACCTGGATTTTACATTGGAAATCATATGGTCCAATGCCCTTCTTGTTATGGTCGAGGTTTGATAGCTCATCGAGATGGATCAGACTCCATGAGGACACTTTCGACACGAAAAGTAAGCGCTATGAGCGGAGCAGCATCTGTACCAGACGAAGTGTTCCACAGAGCCAAAGGTGTCCAATTATGCAACACTCAAGCCTACCAATGTACTCCAGCTTTCTTTGCAGATTCCTTCTTCCTCAACAAGTTCTCTTCTGAAGTGATTGCAGATCGAGCATCCATCGCTCCCACTGCACGTGTGATATGTGAACGACATATAATCTCAGTCGTACCGGTGACCCGCGTCACAATGGCTGACCATGGAAGGTCCTTCAGTTTCTACATTGTAGGTTTCAGCAAGGAAGTTTACTTGAAGGACTACTACCCCTCAAGGTTCTGCTGGGGGCTGTGCCCTTGCTTGGAGTGGCTGAGAGTGACTGTGAGAACCCCCTCTGTTTTGCTTTGCTTTGCTTCAAAGTTTGGCTTCAATTACATCACATTCACTTCTCTTTCAAGCTACATCTTCATGGGACCAGAATCTAAAACCGCTTTTTTCTAG

Protein sequence

MLVGNDVCEDCIYGGILWILLLEKGCLIVKQEKPTIIKAVRSMSETMNRHWSHGNWSEHLSNSQPLYVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFFIPTCNPNQEPGFYIGNHMVQCPSCYGRGLIAHRDGSDSMRTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFSSEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSRFCWGLCPCLEWLRVTVRTPSVLLCFASKFGFNYITFTSLSSYIFMGPESKTAFF

Homology

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BLAST of Carg19972 vs. NCBI nr
Match: XP_023544518.1 (protein SSUH2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.5 bits (929), Expect = 1.5e-96
Identity = 202/314 (64.33%), Postives = 217/314 (69.11%), Query Frame = 0


Query: 9   EDC-IYGGILWILLLEKGCLIVKQEKPTIIKAVRSMSETMNRHWSHGNWSEHL-SNSQPL 68
           EDC +Y G L   + E+   ++K+ +P    A+    +  N     G W   L S   PL
Sbjct: 131 EDCNVYVGTLDTFIEERD--VIKETEPYKGGAI----DGRNNGPELGVWELDLKSEFPPL 190

Query: 69  YVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFFIPTCNPNQEPGFYI 128
           YVPSKESRKRIPHSETIEKC             S+ A   +LV    PTCNP+QEPGFYI
Sbjct: 191 YVPSKESRKRIPHSETIEKC-------------SVCAGRGDLV---CPTCNPDQEPGFYI 250

Query: 129 GNHMVQCPSCYGRGLIAHRDGSDSM----------------------------------- 188
           GNHMVQCPSCYGRGLIAHRDGSDS+                                   
Sbjct: 251 GNHMVQCPSCYGRGLIAHRDGSDSICAKCDGKGKLXXXXXXXXXXXXXXXXXXXXXLLTR 310

Query: 189 -------RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 248
                  RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS
Sbjct: 311 SIAVVSWRTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 370

Query: 249 SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 279
           SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR
Sbjct: 371 SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 422

[Close]

BLAST of Carg19972 vs. NCBI nr
Match: XP_022950703.1 (protein SSUH2 homolog [Cucurbita moschata])

HSP 1 Score: 361.7 bits (927), Expect = 2.6e-96
Identity = 202/314 (64.33%), Postives = 216/314 (68.79%), Query Frame = 0


Query: 9   EDC-IYGGILWILLLEKGCLIVKQEKPTIIKAVRSMSETMNRHWSHGNWSEHL-SNSQPL 68
           EDC +Y G L   + E+   ++K+ +P    A+    +  N     G W   L S   PL
Sbjct: 131 EDCNVYVGTLDTFIEERD--VIKETEPYKGGAI----DGRNNGPELGVWELDLKSEFPPL 190

Query: 69  YVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFFIPTCNPNQEPGFYI 128
           YVPSKESRKRIPHSETIEKC             S+ A   +LV    PTCNP+QEPGFYI
Sbjct: 191 YVPSKESRKRIPHSETIEKC-------------SVCAGRGDLV---CPTCNPDQEPGFYI 250

Query: 129 GNHMVQCPSCYGRGLIAHRDGSDSM----------------------------------- 188
           GNHMVQCPSCYGRGLIAHRDGSDS+                                   
Sbjct: 251 GNHMVQCPSCYGRGLIAHRDGSDSICAKCDGKGKLXXXXXXXXXXXXXXXXXXXXXLLTR 310

Query: 189 -------RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 248
                  RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS
Sbjct: 311 SIAVVSWRTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 370

Query: 249 SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 279
           SEVIADRASIAPTARVICERHIISVVPV RVTMADHGRSFSFYIVGFSKEVYLKDYYPSR
Sbjct: 371 SEVIADRASIAPTARVICERHIISVVPVARVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 422

[Close]

BLAST of Carg19972 vs. NCBI nr
Match: XP_022978193.1 (protein SSUH2 homolog [Cucurbita maxima])

HSP 1 Score: 355.1 bits (910), Expect = 2.4e-94
Identity = 198/314 (63.06%), Postives = 215/314 (68.47%), Query Frame = 0


Query: 9   EDC-IYGGILWILLLEKGCLIVKQEKPTIIKAVRSMSETMNRHWSHGNWSEHL-SNSQPL 68
           EDC +Y G L   + E+   ++K+ +P    A+    +  N     G W   L S   PL
Sbjct: 131 EDCNVYVGTLDTFIEERD--VIKETEPYKGGAI----DGRNNGPELGVWELDLKSKFPPL 190

Query: 69  YVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFFIPTCNPNQEPGFYI 128
           YVPSKESR RIPHSET+ KC             S+ A   +LV    PTCNP+QEPGFYI
Sbjct: 191 YVPSKESRIRIPHSETVGKC-------------SVCAGRGDLV---CPTCNPDQEPGFYI 250

Query: 129 GNHMVQCPSCYGRGLIAHRDGSDSM----------------------------------- 188
           GNHMVQCPSCYGRGLIAHRDGSDS+                                   
Sbjct: 251 GNHMVQCPSCYGRGLIAHRDGSDSICAKCDGKGKLXXXXXXXXXXXXXXXXXXXXXLLTR 310

Query: 189 -------RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 248
                  RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS
Sbjct: 311 SVAVVSWRTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 370

Query: 249 SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 279
           SEVIADRASI+PTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR
Sbjct: 371 SEVIADRASISPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 422

[Close]

BLAST of Carg19972 vs. NCBI nr
Match: XP_008448954.1 (PREDICTED: protein SSUH2 homolog [Cucumis melo])

HSP 1 Score: 339.3 bits (869), Expect = 1.4e-89
Identity = 189/314 (60.19%), Postives = 209/314 (66.56%), Query Frame = 0


Query: 9   EDC-IYGGILWILLLEKGCLIVKQEKPTIIKAVRSMSETMNRHWSHGNWSEHLSNSQP-L 68
           EDC +Y G L   + E+   ++K+ +P     +    +  N     G W   L +  P L
Sbjct: 135 EDCNVYVGTLDTFIEERD--VIKETEPYRGGTI----DGRNNGPELGIWELDLKSDFPLL 194

Query: 69  YVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFFIPTCNPNQEPGFYI 128
           +VPSKESRKRIPHSET+EKC             S+ A   +LV    PTCN NQEPGFY+
Sbjct: 195 FVPSKESRKRIPHSETVEKC-------------SVCAGRGDLV---CPTCNANQEPGFYV 254

Query: 129 GNHMVQCPSCYGRGLIAHRDGSDSM----------------------------------- 188
            NHMVQCPSCYGRGLIAHRDGSD++                                   
Sbjct: 255 ENHMVQCPSCYGRGLIAHRDGSDTICAKCDGKGKLXXXXXXXXXXXXXXXXXXXXXLLTR 314

Query: 189 -------RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 248
                  RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS
Sbjct: 315 SVAVVRWRTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 374

Query: 249 SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 279
           SEVIADRA  +PTARVICERHIISVVPVTRVTMA+ GR FSFYIVG SKEVYLKDYYPSR
Sbjct: 375 SEVIADRAPFSPTARVICERHIISVVPVTRVTMAERGRFFSFYIVGLSKEVYLKDYYPSR 426

[Close]

BLAST of Carg19972 vs. NCBI nr
Match: XP_011653674.1 (PREDICTED: protein SSUH2 homolog isoform X1 [Cucumis sativus] >KGN54347.1 hypothetical protein Csa_4G307890 [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 8.9e-89
Identity = 187/314 (59.55%), Postives = 208/314 (66.24%), Query Frame = 0


Query: 9   EDC-IYGGILWILLLEKGCLIVKQEKPTIIKAVRSMSETMNRHWSHGNWSEHLSNSQP-L 68
           EDC +Y G L   + E+   ++K+ +P     +    +  N     G W   L +  P L
Sbjct: 135 EDCNVYVGTLDTFIEERD--VIKETEPYRGGTI----DGKNNGPELGIWELDLKSEFPLL 194

Query: 69  YVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFFIPTCNPNQEPGFYI 128
           +VPS ESRKRIPHSET+EKC             S+ A   +LV    PTCN NQEPGFY+
Sbjct: 195 FVPSHESRKRIPHSETVEKC-------------SVCAGRGDLV---CPTCNANQEPGFYV 254

Query: 129 GNHMVQCPSCYGRGLIAHRDGSDSM----------------------------------- 188
            NHMVQCPSCYGRGLIAHRDGSD++                                   
Sbjct: 255 ENHMVQCPSCYGRGLIAHRDGSDTICAKCDGKGKLXXXXXXXXXXXXXXXXXXXXXLLTR 314

Query: 189 -------RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 248
                  RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS
Sbjct: 315 SVAVVRWRTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 374

Query: 249 SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 279
           SEVI DRA ++PTARVICERHIISVVPVTRVTMA+ GR FSFYIVG SKEVYLKDYYPSR
Sbjct: 375 SEVIVDRAPVSPTARVICERHIISVVPVTRVTMAERGRFFSFYIVGLSKEVYLKDYYPSR 426

[Close]

BLAST of Carg19972 vs. TAIR10
Match: AT2G38000.1 (chaperone protein dnaJ-related)

HSP 1 Score: 271.2 bits (692), Expect = 8.3e-73
Identity = 146/314 (46.50%), Postives = 187/314 (59.55%), Query Frame = 0


Query: 18  WILLLEKGCLIVKQEKPTIIKAVRSMSETM---------NRHWSH-GNWSEHLSNSQP-L 77
           W +   + C +      T I+   ++++T+          +H S  G W   L    P L
Sbjct: 122 WKIHAVEDCNVYVGTLDTFIEEREALTQTVPFTGGEFNGKKHGSEPGLWELDLRPQFPTL 181

Query: 78  YVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFFIPTCNPNQEPGFYI 137
           +VP KE++  +P+SET+EKC+        +                 PTCN + EPGFY 
Sbjct: 182 FVPYKETQVLVPNSETVEKCTGCTGRGDVV----------------CPTCNADGEPGFYK 241

Query: 138 GNHMVQCPSCYGRGLIAHRDGSDSM----------------------------------- 197
            N M++C +CYGRGL+AH+DGSD++                                   
Sbjct: 242 ENQMMKCSTCYGRGLVAHKDGSDTICXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTS 301

Query: 198 -------RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 257
                  +TLS RKVSA  GA SVP+EVF RA+GVQLCNTQAYQCTPA+FADS+FLN+FS
Sbjct: 302 SIAVVKWKTLSKRKVSATRGAGSVPEEVFDRAEGVQLCNTQAYQCTPAYFADSYFLNRFS 361

Query: 258 SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 279
           SEVI+ RA + PTA V+CERH ISVVPVTRVTM D G++FSFYI+GF KE+YLKDYYP+R
Sbjct: 362 SEVISLRAEVPPTANVVCERHTISVVPVTRVTMEDRGKAFSFYIIGFGKEIYLKDYYPAR 419

[Close]

BLAST of Carg19972 vs. Swiss-Prot
Match: sp|Q9Y2M2|SSUH2_HUMAN (Protein SSUH2 homolog OS=Homo sapiens OX=9606 GN=SSUH2 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.2e-04
Identity = 32/101 (31.68%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 169 PDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFSSEVIADR-ASIAPTARVICERHII 228
           P E+  +AKG  L   +     P        ++  S   IA+  A++A  ARV+ +R  I
Sbjct: 250 PRELLAKAKGENLFKDENSVVYPIVDFPLRDISLASQRGIAEHSAALASRARVLQQRQTI 309

Query: 229 SVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSRFCWG 269
            ++P+T V     G+++ +YI G   +VY  D YP R+C G
Sbjct: 310 ELIPLTEVHYWYQGKTYVYYIYGTDHQVYAVD-YPERYCCG 349

[Close]

BLAST of Carg19972 vs. TrEMBL
Match: tr|A0A1S3BKY0|A0A1S3BKY0_CUCME (protein SSUH2 homolog OS=Cucumis melo OX=3656 GN=LOC103490964 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 9.0e-90
Identity = 189/314 (60.19%), Postives = 209/314 (66.56%), Query Frame = 0


Query: 9   EDC-IYGGILWILLLEKGCLIVKQEKPTIIKAVRSMSETMNRHWSHGNWSEHLSNSQP-L 68
           EDC +Y G L   + E+   ++K+ +P     +    +  N     G W   L +  P L
Sbjct: 135 EDCNVYVGTLDTFIEERD--VIKETEPYRGGTI----DGRNNGPELGIWELDLKSDFPLL 194

Query: 69  YVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFFIPTCNPNQEPGFYI 128
           +VPSKESRKRIPHSET+EKC             S+ A   +LV    PTCN NQEPGFY+
Sbjct: 195 FVPSKESRKRIPHSETVEKC-------------SVCAGRGDLV---CPTCNANQEPGFYV 254

Query: 129 GNHMVQCPSCYGRGLIAHRDGSDSM----------------------------------- 188
            NHMVQCPSCYGRGLIAHRDGSD++                                   
Sbjct: 255 ENHMVQCPSCYGRGLIAHRDGSDTICAKCDGKGKLXXXXXXXXXXXXXXXXXXXXXLLTR 314

Query: 189 -------RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 248
                  RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS
Sbjct: 315 SVAVVRWRTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 374

Query: 249 SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 279
           SEVIADRA  +PTARVICERHIISVVPVTRVTMA+ GR FSFYIVG SKEVYLKDYYPSR
Sbjct: 375 SEVIADRAPFSPTARVICERHIISVVPVTRVTMAERGRFFSFYIVGLSKEVYLKDYYPSR 426

[Close]

BLAST of Carg19972 vs. TrEMBL
Match: tr|A0A0A0L182|A0A0A0L182_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307890 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 5.9e-89
Identity = 187/314 (59.55%), Postives = 208/314 (66.24%), Query Frame = 0


Query: 9   EDC-IYGGILWILLLEKGCLIVKQEKPTIIKAVRSMSETMNRHWSHGNWSEHLSNSQP-L 68
           EDC +Y G L   + E+   ++K+ +P     +    +  N     G W   L +  P L
Sbjct: 135 EDCNVYVGTLDTFIEERD--VIKETEPYRGGTI----DGKNNGPELGIWELDLKSEFPLL 194

Query: 69  YVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFFIPTCNPNQEPGFYI 128
           +VPS ESRKRIPHSET+EKC             S+ A   +LV    PTCN NQEPGFY+
Sbjct: 195 FVPSHESRKRIPHSETVEKC-------------SVCAGRGDLV---CPTCNANQEPGFYV 254

Query: 129 GNHMVQCPSCYGRGLIAHRDGSDSM----------------------------------- 188
            NHMVQCPSCYGRGLIAHRDGSD++                                   
Sbjct: 255 ENHMVQCPSCYGRGLIAHRDGSDTICAKCDGKGKLXXXXXXXXXXXXXXXXXXXXXLLTR 314

Query: 189 -------RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 248
                  RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS
Sbjct: 315 SVAVVRWRTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 374

Query: 249 SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 279
           SEVI DRA ++PTARVICERHIISVVPVTRVTMA+ GR FSFYIVG SKEVYLKDYYPSR
Sbjct: 375 SEVIVDRAPVSPTARVICERHIISVVPVTRVTMAERGRFFSFYIVGLSKEVYLKDYYPSR 426

[Close]

BLAST of Carg19972 vs. TrEMBL
Match: tr|A0A2C9VG67|A0A2C9VG67_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G086700 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.4e-81
Identity = 171/314 (54.46%), Postives = 200/314 (63.69%), Query Frame = 0


Query: 9   EDC-IYGGILWILLLEKGCLIVKQEKPTIIKAVRSMSETMNRHWSHGNWSEHLSNSQP-L 68
           EDC +Y G L   + E+    +++ KP I   +    +  ++    G W   L +  P L
Sbjct: 134 EDCNVYVGTLDTFIEERE--TIRETKPYIGGDI----DGKDKGPELGVWELDLRSQFPVL 193

Query: 69  YVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFFIPTCNPNQEPGFYI 128
           + P KE+R RIPHSE IEKC+                      +    TCN NQEPGFY 
Sbjct: 194 FTPHKETRARIPHSEIIEKCT----------------DCEGRGNIICRTCNANQEPGFYK 253

Query: 129 GNHMVQCPSCYGRGLIAHRDGSDSM----------------------------------- 188
            N M+QCP+CYGRGLIAHRDGSD++                                   
Sbjct: 254 ENQMLQCPACYGRGLIAHRDGSDTICXXXXXXXXXXXXXXXXXXXXXXXXXHGSGSLLTC 313

Query: 189 -------RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 248
                  RTLSTRKVSA SGAASVPD+VFHRA+G+QLCNTQAYQCTPAFFADSFFLNKFS
Sbjct: 314 SVAVVRWRTLSTRKVSATSGAASVPDDVFHRARGIQLCNTQAYQCTPAFFADSFFLNKFS 373

Query: 249 SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 279
           SEVIA+RAS+ PTARVICERHIISVVPVTRVTMA  GRSFSFYI+GFS+EVYLKDYYP+R
Sbjct: 374 SEVIAERASVPPTARVICERHIISVVPVTRVTMAHRGRSFSFYIIGFSREVYLKDYYPAR 425

[Close]

BLAST of Carg19972 vs. TrEMBL
Match: tr|A0A1R3K8U4|A0A1R3K8U4_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02404 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.2e-80
Identity = 169/314 (53.82%), Postives = 203/314 (64.65%), Query Frame = 0


Query: 9   EDC-IYGGILWILLLEKGCLIVKQEKPTIIKAVRSMSETMNRHWSHGNWSEHLSNSQP-L 68
           EDC +Y G L   L E+   ++++ +P +   +    +  +     G W   L +  P L
Sbjct: 133 EDCNVYVGTLETFLEERE--VIRETEPYLGDKI----DGKDNGPELGIWELDLRSEFPVL 192

Query: 69  YVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFFIPTCNPNQEPGFYI 128
           +VP KE+R +IPHSETIEKCS               A    +V    PTCN +QEPGFY 
Sbjct: 193 FVPYKETRVKIPHSETIEKCSG-------------CAGRGGIV---CPTCNADQEPGFYK 252

Query: 129 GNHMVQCPSCYGRGLIAHRDGSDSM----------------------------------- 188
            N M QCP+CYGRGLIAHRDGSD++                                   
Sbjct: 253 ENQMAQCPACYGRGLIAHRDGSDTICTKCNGKGKIXXXXXXXXXXXXXXXXXXXXXMVTR 312

Query: 189 -------RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCTPAFFADSFFLNKFS 248
                  +TLSTRKVSA SGAASVPDEVFHRAKGVQLCNTQAYQCTPA+FADSFFLNKFS
Sbjct: 313 NIAIVRWKTLSTRKVSATSGAASVPDEVFHRAKGVQLCNTQAYQCTPAYFADSFFLNKFS 372

Query: 249 SEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVGFSKEVYLKDYYPSR 279
           S++IADRAS+ PTARVICERH ISVVPVTRVTM+ H +SFSFYIVG+S+++YLKDYYP+R
Sbjct: 373 SDIIADRASVPPTARVICERHTISVVPVTRVTMSHHRQSFSFYIVGYSRDLYLKDYYPAR 424

[Close]

BLAST of Carg19972 vs. TrEMBL
Match: tr|A0A2P5AKL7|A0A2P5AKL7_PARAD (Cytochrome c-552 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_322880 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.9e-80
Identity = 161/267 (60.30%), Postives = 177/267 (66.29%), Query Frame = 0


Query: 54  GNWSEHLSNSQP-LYVPSKESRKRIPHSETIEKCSAFVFNYSCLQILSLSAPTRNLVSFF 113
           G W   L +  P L+VP +ESR +IPHSE IEKCS                         
Sbjct: 175 GVWELDLRSDFPVLFVPYRESRAKIPHSEVIEKCS----------------DCAGRGDII 234

Query: 114 IPTCNPNQEPGFYIGNHMVQCPSCYGRGLIAHRDGSDSM--------------------- 173
             TCN NQEPGFY  N M+QCP+CYGRGLIAHRDGSD++                     
Sbjct: 235 CSTCNVNQEPGFYKENQMMQCPACYGRGLIAHRDGSDTICVKCNGTGKIXXXXXXXXXXX 294

Query: 174 ---------------------RTLSTRKVSAMSGAASVPDEVFHRAKGVQLCNTQAYQCT 233
                                +TLSTRKVS  SGAASVPD+VFHRAKGVQLCNTQAYQCT
Sbjct: 295 XXXXXXXXXXLLTRNIAIVRWKTLSTRKVSGTSGAASVPDDVFHRAKGVQLCNTQAYQCT 354

Query: 234 PAFFADSFFLNKFSSEVIADRASIAPTARVICERHIISVVPVTRVTMADHGRSFSFYIVG 278
           PAFFADSFFLNKFSSEVIADRA + PTARVICERH ISVVPVTRVTMA+ GRSFSFYI+G
Sbjct: 355 PAFFADSFFLNKFSSEVIADRAPVPPTARVICERHTISVVPVTRVTMANRGRSFSFYIIG 414

The following BLAST results are available for this feature:

BLAST of Carg19972 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544518.1	1.5e-96	64.33	protein SSUH2 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022950703.1	2.6e-96	64.33	protein SSUH2 homolog [Cucurbita moschata]	[more]
XP_022978193.1	2.4e-94	63.06	protein SSUH2 homolog [Cucurbita maxima]	[more]
XP_008448954.1	1.4e-89	60.19	PREDICTED: protein SSUH2 homolog [Cucumis melo]	[more]
XP_011653674.1	8.9e-89	59.55	PREDICTED: protein SSUH2 homolog isoform X1 [Cucumis sativus] >KGN54347.1 hypoth...	[more]

BLAST of Carg19972 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G38000.1	8.3e-73	46.50	chaperone protein dnaJ-related	[more]

BLAST of Carg19972 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9Y2M2\|SSUH2_HUMAN	1.2e-04	31.68	Protein SSUH2 homolog OS=Homo sapiens OX=9606 GN=SSUH2 PE=1 SV=1	[more]

BLAST of Carg19972 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKY0\|A0A1S3BKY0_CUCME	9.0e-90	60.19	protein SSUH2 homolog OS=Cucumis melo OX=3656 GN=LOC103490964 PE=4 SV=1	[more]
tr\|A0A0A0L182\|A0A0A0L182_CUCSA	5.9e-89	59.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307890 PE=4 SV=1	[more]
tr\|A0A2C9VG67\|A0A2C9VG67_MANES	3.4e-81	54.46	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G086700 PE=4 SV=...	[more]
tr\|A0A1R3K8U4\|A0A1R3K8U4_COCAP	2.2e-80	53.82	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02404 PE=4 ...	[more]
tr\|A0A2P5AKL7\|A0A2P5AKL7_PARAD	2.9e-80	60.30	Cytochrome c-552 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_322880 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19972-RA	Carg19972-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15852:SF20	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 152..272
None	No IPR available	PANTHER	PTHR15852	FAMILY NOT NAMED	coord: 152..272 coord: 61..151
None	No IPR available	PANTHER	PTHR15852:SF20	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 61..151

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19972	Cla018131	Watermelon (97103) v1	carwmB0554
Carg19972	Csa4G307890	Cucumber (Chinese Long) v2	carcuB0585
Carg19972	MELO3C003219	Melon (DHL92) v3.5.1	carmeB0561
Carg19972	ClCG04G007320	Watermelon (Charleston Gray)	carwcgB0542
Carg19972	CSPI04G15580	Wild cucumber (PI 183967)	carcpiB0591
Carg19972	Cucsa.066970	Cucumber (Gy14) v1	carcgyB0632
Carg19972	CmaCh03G003770	Cucurbita maxima (Rimu)	carcmaB0775
Carg19972	CmoCh03G003870	Cucurbita moschata (Rifu)	carcmoB0753
Carg19972	Lsi01G015200	Bottle gourd (USVL1VR-Ls)	carlsiB503
Carg19972	Cp4.1LG10g08140	Cucurbita pepo (Zucchini)	carcpeB0785
Carg19972	CsGy4G014940	Cucumber (Gy14) v2	carcgybB0561
Carg19972	MELO3C003219.2	Melon (DHL92) v3.6.1	carmedB0567
Carg19972	CsaV3_4G025930	Cucumber (Chinese Long) v3	carcucB0592
Carg19972	Cla97C04G073910	Watermelon (97103) v2	carwmbB0583
Carg19972	Bhi03G001657	Wax gourd	carwgoB0666

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19972	Cucurbita maxima (Rimu)	carcmaB0776
Carg19972	Silver-seed gourd	carcarB022
Carg19972	Silver-seed gourd	carcarB098
Carg19972	Silver-seed gourd	carcarB195
Carg19972	Silver-seed gourd	carcarB301
Carg19972	Silver-seed gourd	carcarB514
Carg19972	Silver-seed gourd	carcarB517
Carg19972	Cucumber (Gy14) v2	carcgybB0560
Carg19972	Cucumber (Gy14) v2	carcgybB0562
Carg19972	Cucumber (Gy14) v1	carcgyB0634
Carg19972	Cucumber (Gy14) v1	carcgyB0635
Carg19972	Cucurbita maxima (Rimu)	carcmaB0777
Carg19972	Cucurbita maxima (Rimu)	carcmaB0773
Carg19972	Cucurbita maxima (Rimu)	carcmaB0774
Carg19972	Cucurbita maxima (Rimu)	carcmaB0778
Carg19972	Cucurbita moschata (Rifu)	carcmoB0751
Carg19972	Cucurbita moschata (Rifu)	carcmoB0752
Carg19972	Cucurbita moschata (Rifu)	carcmoB0754
Carg19972	Cucurbita moschata (Rifu)	carcmoB0755
Carg19972	Cucurbita moschata (Rifu)	carcmoB0756
Carg19972	Cucurbita moschata (Rifu)	carcmoB0757
Carg19972	Cucurbita pepo (Zucchini)	carcpeB0786
Carg19972	Cucurbita pepo (Zucchini)	carcpeB0790
Carg19972	Cucurbita pepo (Zucchini)	carcpeB0791
Carg19972	Cucurbita pepo (Zucchini)	carcpeB0792
Carg19972	Wild cucumber (PI 183967)	carcpiB0592
Carg19972	Cucumber (Chinese Long) v2	carcuB0584
Carg19972	Cucumber (Chinese Long) v2	carcuB0586
Carg19972	Cucumber (Chinese Long) v3	carcucB0594
Carg19972	Cucumber (Chinese Long) v3	carcucB0591
Carg19972	Bottle gourd (USVL1VR-Ls)	carlsiB504
Carg19972	Bottle gourd (USVL1VR-Ls)	carlsiB505
Carg19972	Melon (DHL92) v3.5.1	carmeB0559
Carg19972	Melon (DHL92) v3.5.1	carmeB0560
Carg19972	Melon (DHL92) v3.6.1	carmedB0565
Carg19972	Melon (DHL92) v3.6.1	carmedB0566
Carg19972	Watermelon (Charleston Gray)	carwcgB0540
Carg19972	Watermelon (Charleston Gray)	carwcgB0541
Carg19972	Watermelon (Charleston Gray)	carwcgB0543
Carg19972	Watermelon (97103) v1	carwmB0553
Carg19972	Watermelon (97103) v1	carwmB0555
Carg19972	Watermelon (97103) v2	carwmbB0581
Carg19972	Watermelon (97103) v2	carwmbB0582
Carg19972	Wax gourd	carwgoB0664
Carg19972	Wax gourd	carwgoB0665