Carg19958 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19958
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DEAD-box ATP-dependent RNA helicase
Location	Cucurbita_argyrosperma_scaffold_167 : 76551 .. 76820 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATTCTCCCAATTCCTCTTGCAATTCCGAGCCCTCTTCGTCCGCCCTTATTCTCTCTCTCAGTCTCTGGCTGGTTCAAACCACCTCTCTTACTTTTCCAATCGAATTCCGATCGCTTCTTAGGCTACAACCCTAATTCGAATGGGCGTAGATCCAAGAAAGATAAGCAGCTGCTTAAGGCTTGGCTGTGCCGCGAACGCCAGATATATGAGATGCGTAAGCGGGCTGAGTTTAAGACGGCTGTCTCCGAGCTGGAGAGGCCGTAG

mRNA sequence

ATGTCGATTCTCCCAATTCCTCTTGCAATTCCGAGCCCTCTTCGTCCGCCCTTATTCTCTCTCTCAGTCTCTGGCTGGTTCAAACCACCTCTCTTACTTTTCCAATCGAATTCCGATCGCTTCTTAGGCTACAACCCTAATTCGAATGGGCGTAGATCCAAGAAAGATAAGCAGCTGCTTAAGGCTTGGCTGTGCCGCGAACGCCAGATATATGAGATGCGTAAGCGGGCTGAGTTTAAGACGGCTGTCTCCGAGCTGGAGAGGCCGTAG

Coding sequence (CDS)

ATGTCGATTCTCCCAATTCCTCTTGCAATTCCGAGCCCTCTTCGTCCGCCCTTATTCTCTCTCTCAGTCTCTGGCTGGTTCAAACCACCTCTCTTACTTTTCCAATCGAATTCCGATCGCTTCTTAGGCTACAACCCTAATTCGAATGGGCGTAGATCCAAGAAAGATAAGCAGCTGCTTAAGGCTTGGCTGTGCCGCGAACGCCAGATATATGAGATGCGTAAGCGGGCTGAGTTTAAGACGGCTGTCTCCGAGCTGGAGAGGCCGTAG

Protein sequence

MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLFQSNSDRFLGYNPNSNGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP

Homology

[Close]

BLAST of Carg19958 vs. NCBI nr
Match: KGN54306.1 (hypothetical protein Csa_4G303050 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 7.4e-09
Identity = 52/107 (48.60%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 1   MSILPIPLAIPSPLRPPLFSLSVSGWFKPPL--------LLFQSNSDRFLGYNPNS---- 60
           M ILPI LAI  P RPPLFS S S      L        +L ++     +G  P +    
Sbjct: 1   MPILPISLAISIPSRPPLFSFSQSLTGSNHLSYLPNRMPILTKTTPLIRMGGGPRTYPGG 60

Query: 61  ------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP 90
                    ++KK KQLLKA LCRERQIYEMRKRAE K AVS+LERP
Sbjct: 61  VSKWQWKRMQAKKGKQLLKARLCRERQIYEMRKRAELKAAVSQLERP 107

[Close]

BLAST of Carg19958 vs. NCBI nr
Match: XP_011653656.1 (PREDICTED: uncharacterized protein LOC101220703 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 7.4e-09
Identity = 52/107 (48.60%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 1   MSILPIPLAIPSPLRPPLFSLSVSGWFKPPL--------LLFQSNSDRFLGYNPNS---- 60
           M ILPI LAI  P RPPLFS S S      L        +L ++     +G  P +    
Sbjct: 1   MPILPISLAISIPSRPPLFSFSQSLTGSNHLSYLPNRMPILTKTTPLIRMGGGPRTYPGG 60

Query: 61  ------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP 90
                    ++KK KQLLKA LCRERQIYEMRKRAE K AVS+LERP
Sbjct: 61  VSKWQWKRMQAKKGKQLLKARLCRERQIYEMRKRAELKAAVSQLERP 107

[Close]

BLAST of Carg19958 vs. NCBI nr
Match: XP_022966589.1 (uncharacterized protein LOC111466226 [Cucurbita maxima] >XP_022966590.1 uncharacterized protein LOC111466226 [Cucurbita maxima] >XP_022966591.1 uncharacterized protein LOC111466226 [Cucurbita maxima] >XP_022966592.1 uncharacterized protein LOC111466226 [Cucurbita maxima] >XP_022966593.1 uncharacterized protein LOC111466226 [Cucurbita maxima] >XP_022966594.1 uncharacterized protein LOC111466226 [Cucurbita maxima])

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 53/108 (49.07%), Postives = 59/108 (54.63%), Query Frame = 0


Query: 1   MSILPIPLAIPSPLR-PPLFSLSVSGWFKPPLLLFQSNSDRF--------LGYNPNS--- 60
           M I PI LAI +P R PPLFS S S      LL F +             +G  P +   
Sbjct: 1   MPIFPISLAISNPPRPPPLFSFSQSITGSNRLLYFPNGIRTATKITTLIRMGGGPRTYPG 60

Query: 61  -------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP 90
                     ++KK KQLLKA LCRERQIYEMRKRAE K AVSELERP
Sbjct: 61  GVSKWQWKRMQAKKAKQLLKARLCRERQIYEMRKRAELKAAVSELERP 108

[Close]

BLAST of Carg19958 vs. NCBI nr
Match: XP_022931877.1 (uncharacterized protein LOC111438163 [Cucurbita moschata] >XP_022931878.1 uncharacterized protein LOC111438163 [Cucurbita moschata] >XP_022931879.1 uncharacterized protein LOC111438163 [Cucurbita moschata] >XP_022931881.1 uncharacterized protein LOC111438163 [Cucurbita moschata])

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-08
Identity = 52/111 (46.85%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 1   MSILPIPLAIPSPLRPP---LFSLSVSGWFKPPLLLFQSNSDRF---------LGYNPNS 60
           M I PI LAI +P RPP    FS S++G  +   LL+  N  R          +G  P +
Sbjct: 1   MPIFPISLAISNPPRPPPLFSFSQSITGSNR---LLYLPNGIRTATKITTVIRMGGGPRT 60

Query: 61  ----------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP 90
                        ++KK KQLLKA LCRERQIYEMRKRAE K AVS+LERP
Sbjct: 61  YPGGVSKWQWKRMQAKKAKQLLKARLCRERQIYEMRKRAELKAAVSQLERP 108

[Close]

BLAST of Carg19958 vs. NCBI nr
Match: XP_022151570.1 (uncharacterized protein LOC111019483 [Momordica charantia] >XP_022151571.1 uncharacterized protein LOC111019483 [Momordica charantia] >XP_022151572.1 uncharacterized protein LOC111019483 [Momordica charantia] >XP_022151573.1 uncharacterized protein LOC111019483 [Momordica charantia] >XP_022151574.1 uncharacterized protein LOC111019483 [Momordica charantia] >XP_022151575.1 uncharacterized protein LOC111019483 [Momordica charantia] >XP_022151576.1 uncharacterized protein LOC111019483 [Momordica charantia] >XP_022151577.1 uncharacterized protein LOC111019483 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 8.2e-08
Identity = 54/118 (45.76%), Postives = 56/118 (47.46%), Query Frame = 0


Query: 1   MSILPIPLAIPSPLRPPLFSLSVSGWFKPPLLLFQSNSDRFLGYNPN------------- 60
           M I  I LAIP+P RP LFS S S            N    L Y PN             
Sbjct: 1   MPIFSISLAIPNPPRPLLFSFSQS-----------LNGPNHLSYLPNRIPIATRITTLIR 60

Query: 61  -SNGRR---------------SKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP 90
              G R               +KK KQLLKA LCRERQIYEMRKRAE K AVSELERP
Sbjct: 61  MGGGPRTFPGGVSKWQWKRMQAKKAKQLLKARLCRERQIYEMRKRAELKAAVSELERP 107

[Close]

BLAST of Carg19958 vs. TAIR10
Match: AT2G37920.1 (copper ion transmembrane transporters)

HSP 1 Score: 60.8 bits (146), Expect = 4.8e-10
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 52  RSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP 90
           ++KK KQLLKA LCRERQIYEMRKRAE K AV+ELERP
Sbjct: 70  QAKKQKQLLKARLCRERQIYEMRKRAELKAAVAELERP 107

[Close]

BLAST of Carg19958 vs. TrEMBL
Match: tr|A0A0A0L2E2|A0A0A0L2E2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303050 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-09
Identity = 52/107 (48.60%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 1   MSILPIPLAIPSPLRPPLFSLSVSGWFKPPL--------LLFQSNSDRFLGYNPNS---- 60
           M ILPI LAI  P RPPLFS S S      L        +L ++     +G  P +    
Sbjct: 1   MPILPISLAISIPSRPPLFSFSQSLTGSNHLSYLPNRMPILTKTTPLIRMGGGPRTYPGG 60

Query: 61  ------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP 90
                    ++KK KQLLKA LCRERQIYEMRKRAE K AVS+LERP
Sbjct: 61  VSKWQWKRMQAKKGKQLLKARLCRERQIYEMRKRAELKAAVSQLERP 107

[Close]

BLAST of Carg19958 vs. TrEMBL
Match: tr|A0A1S3BKN8|A0A1S3BKN8_CUCME (uncharacterized protein LOC103490641 OS=Cucumis melo OX=3656 GN=LOC103490641 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.2e-08
Identity = 50/107 (46.73%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 1   MSILPIPLAIPSPLRPPLFSLSVSGWFKPPL--------LLFQSNSDRFLGYNPNS---- 60
           M IL   L I  PLRPPLFS S S      L        ++ ++ +   +G  P +    
Sbjct: 1   MPILQTSLPISIPLRPPLFSFSQSLTGSNHLSYLPNRMPIVTKTTTLIRMGGGPRTYPGG 60

Query: 61  ------NGRRSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP 90
                    ++KK KQLLKA LCRERQIYEMRKRAE K AVSELERP
Sbjct: 61  VSKWQWKRMQAKKAKQLLKARLCRERQIYEMRKRAELKAAVSELERP 107

[Close]

BLAST of Carg19958 vs. TrEMBL
Match: tr|A0A2I4HFI2|A0A2I4HFI2_9ROSI (putative DEAD-box ATP-dependent RNA helicase 33 OS=Juglans regia OX=51240 GN=LOC109016962 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-07
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 52  RSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP 90
           ++KK KQLLKA LCRERQIYEMRKRAE K AVSELERP
Sbjct: 74  QAKKSKQLLKARLCRERQIYEMRKRAELKAAVSELERP 111

[Close]

BLAST of Carg19958 vs. TrEMBL
Match: tr|A0A2I4GYR1|A0A2I4GYR1_9ROSI (putative DEAD-box ATP-dependent RNA helicase 33 OS=Juglans regia OX=51240 GN=LOC109012042 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-07
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 52  RSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP 90
           ++KK KQLLKA LCRERQIYEMRKRAE K AVSELERP
Sbjct: 74  QAKKSKQLLKARLCRERQIYEMRKRAELKAAVSELERP 111

[Close]

BLAST of Carg19958 vs. TrEMBL
Match: tr|A0A2P5EZ23|A0A2P5EZ23_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_134180 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 52  RSKKDKQLLKAWLCRERQIYEMRKRAEFKTAVSELERP 90
           ++KK KQLLKA LCRERQIYEMRKRAE K AVSELERP
Sbjct: 65  QAKKAKQLLKARLCRERQIYEMRKRAELKAAVSELERP 102

The following BLAST results are available for this feature:

BLAST of Carg19958 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54306.1	7.4e-09	48.60	hypothetical protein Csa_4G303050 [Cucumis sativus]	[more]
XP_011653656.1	7.4e-09	48.60	PREDICTED: uncharacterized protein LOC101220703 [Cucumis sativus]	[more]
XP_022966589.1	2.8e-08	49.07	uncharacterized protein LOC111466226 [Cucurbita maxima] >XP_022966590.1 uncharac...	[more]
XP_022931877.1	6.3e-08	46.85	uncharacterized protein LOC111438163 [Cucurbita moschata] >XP_022931878.1 unchar...	[more]
XP_022151570.1	8.2e-08	45.76	uncharacterized protein LOC111019483 [Momordica charantia] >XP_022151571.1 uncha...	[more]

BLAST of Carg19958 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37920.1	4.8e-10	81.58	copper ion transmembrane transporters	[more]

BLAST of Carg19958 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19958 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2E2\|A0A0A0L2E2_CUCSA	4.9e-09	48.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303050 PE=4 SV=1	[more]
tr\|A0A1S3BKN8\|A0A1S3BKN8_CUCME	9.2e-08	46.73	uncharacterized protein LOC103490641 OS=Cucumis melo OX=3656 GN=LOC103490641 PE=...	[more]
tr\|A0A2I4HFI2\|A0A2I4HFI2_9ROSI	7.8e-07	84.21	putative DEAD-box ATP-dependent RNA helicase 33 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4GYR1\|A0A2I4GYR1_9ROSI	7.8e-07	84.21	putative DEAD-box ATP-dependent RNA helicase 33 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2P5EZ23\|A0A2P5EZ23_9ROSA	1.3e-06	84.21	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_134180 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19958-RA	Carg19958-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37724	FAMILY NOT NAMED	coord: 53..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19958	Cla018168	Watermelon (97103) v1	carwmB0554
Carg19958	Csa4G303050	Cucumber (Chinese Long) v2	carcuB0585
Carg19958	MELO3C003181	Melon (DHL92) v3.5.1	carmeB0561
Carg19958	ClCG04G007670	Watermelon (Charleston Gray)	carwcgB0542
Carg19958	CSPI04G15220	Wild cucumber (PI 183967)	carcpiB0591
Carg19958	Cucsa.066630	Cucumber (Gy14) v1	carcgyB0632
Carg19958	CmaCh07G010210	Cucurbita maxima (Rimu)	carcmaB0778
Carg19958	CmoCh07G010660	Cucurbita moschata (Rifu)	carcmoB0757
Carg19958	CmoCh03G004090	Cucurbita moschata (Rifu)	carcmoB0753
Carg19958	Lsi01G014800	Bottle gourd (USVL1VR-Ls)	carlsiB503
Carg19958	Cp4.1LG19g03200	Cucurbita pepo (Zucchini)	carcpeB0787
Carg19958	CsGy4G014580	Cucumber (Gy14) v2	carcgybB0561
Carg19958	MELO3C003181.2	Melon (DHL92) v3.6.1	carmedB0567
Carg19958	CsaV3_4G025560	Cucumber (Chinese Long) v3	carcucB0592
Carg19958	Cla97C04G074360	Watermelon (97103) v2	carwmbB0583
Carg19958	Bhi03G001614	Wax gourd	carwgoB0666

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19958	Carg13240	Silver-seed gourd	carcarB514

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19958	Wax gourd	carwgoB0664
Carg19958	Silver-seed gourd	carcarB098
Carg19958	Silver-seed gourd	carcarB195
Carg19958	Silver-seed gourd	carcarB517
Carg19958	Cucumber (Gy14) v1	carcgyB0635
Carg19958	Cucurbita maxima (Rimu)	carcmaB0777
Carg19958	Cucurbita maxima (Rimu)	carcmaB0773
Carg19958	Cucurbita maxima (Rimu)	carcmaB0775
Carg19958	Cucurbita moschata (Rifu)	carcmoB0751
Carg19958	Cucurbita moschata (Rifu)	carcmoB0755
Carg19958	Cucurbita moschata (Rifu)	carcmoB0756
Carg19958	Cucurbita pepo (Zucchini)	carcpeB0785
Carg19958	Cucurbita pepo (Zucchini)	carcpeB0790
Carg19958	Cucurbita pepo (Zucchini)	carcpeB0791
Carg19958	Cucurbita pepo (Zucchini)	carcpeB0792
Carg19958	Cucumber (Chinese Long) v2	carcuB0584
Carg19958	Cucumber (Chinese Long) v3	carcucB0591
Carg19958	Bottle gourd (USVL1VR-Ls)	carlsiB504
Carg19958	Melon (DHL92) v3.5.1	carmeB0560
Carg19958	Melon (DHL92) v3.6.1	carmedB0566
Carg19958	Watermelon (Charleston Gray)	carwcgB0540
Carg19958	Watermelon (Charleston Gray)	carwcgB0543
Carg19958	Watermelon (97103) v1	carwmB0553
Carg19958	Watermelon (97103) v2	carwmbB0581