Carg19929 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19929
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_108 : 347568 .. 348343 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAATTACGGAAAAGCCCTCCGTCGAACACCAAATTTGCGATGCCACCGATCATGCCACGAAACCGTCATTGTATACACCAGAAACCGTTACAGAGCTCTTTCTCCCAGGTTTCTTCTTGTGAAGAGTATCTCTATGGACGAAGAAGTGGGTGCGAAGAGAAGCAAGGGGCATGGGAGCAGCGCTACGATGTGGGCGATTTTCAAGCGATCGCTGAGGAGAGAGTCGCGCAAAATGAAGCTATTGGGGTCGGCATTCAAGTGGAAGAGACTGACGAATTTGCAGATTTCATTTATGGATAATTTGCTTTTCAAGATTGTGTCTATGTTGGAGGGTGTAGTTCTTGTCGCTACACTCTGTTTCTTCTTTCTCTGTTTTGGATGTCACTTTTGAACTTAGATTCCGCTTGTTTCTCTCTTTTTCCCCTGTTTTCTGTAATTATTTGTGGATATTTCTGTTTGTTTCTTATTTCTTCAATGATCTGTAAGAATTTGGGTTATGAGGGTTAGTTCGGGTTTGGATTGTGATATCTGGAGGGGAAGAGCTTGGGTTTGTGTAGCTCTGTAAAACTCTAGATGAATGAACATTTTGAGCTTCATCTTTGTTGGCCATGGAGTTGGTTTCTCGCTGTTGATGGAGGTAGAAGAAATGGCCGACAGTATACCCGTTTGCCTCATTTTGACCGGAAAACTCCATGGTTATATGGTTTGTGTGGTGGATGGTTGGGAGTGTTGGATGATGAAAGTCCCAGGTCCACTCAATTTAGGAAATGA

mRNA sequence

ATGACAAATTACGGAAAAGCCCTCCGTCGAACACCAAATTTGCGATGCCACCGATCATGCCACGAAACCGTCATTGTATACACCAGAAACCGTTACAGAGCTCTTTCTCCCAGGTTTCTTCTTGTGAAGAGTATCTCTATGGACGAAGAAGTGGGTGCGAAGAGAAGCAAGGGGCATGGGAGCAGCGCTACGATGTGGGCGATTTTCAAGCGATCGCTGAGGAGAGAGTCGCGCAAAATGAAGCTATTGGGGTCGGCATTCAAGTGGAAGAGACTGACGAATTTGCAGATTTCATTTATGGATAATTTGCTTTTCAAGATTGTGTCTATGTTGGAGGGTGTAGTTCTTATGAATGAACATTTTGAGCTTCATCTTTGTTGGCCATGGAGTTGGTTTCTCGCTGTTGATGGAGGTAGAAGAAATGGCCGACAGTATACCCGTTTGCCTCATTTTGACCGGAAAACTCCATGGTTATATGGTTTGTGTGGTGGATGGTTGGGAGTGTTGGATGATGAAAGTCCCAGGTCCACTCAATTTAGGAAATGA

Coding sequence (CDS)

ATGACAAATTACGGAAAAGCCCTCCGTCGAACACCAAATTTGCGATGCCACCGATCATGCCACGAAACCGTCATTGTATACACCAGAAACCGTTACAGAGCTCTTTCTCCCAGGTTTCTTCTTGTGAAGAGTATCTCTATGGACGAAGAAGTGGGTGCGAAGAGAAGCAAGGGGCATGGGAGCAGCGCTACGATGTGGGCGATTTTCAAGCGATCGCTGAGGAGAGAGTCGCGCAAAATGAAGCTATTGGGGTCGGCATTCAAGTGGAAGAGACTGACGAATTTGCAGATTTCATTTATGGATAATTTGCTTTTCAAGATTGTGTCTATGTTGGAGGGTGTAGTTCTTATGAATGAACATTTTGAGCTTCATCTTTGTTGGCCATGGAGTTGGTTTCTCGCTGTTGATGGAGGTAGAAGAAATGGCCGACAGTATACCCGTTTGCCTCATTTTGACCGGAAAACTCCATGGTTATATGGTTTGTGTGGTGGATGGTTGGGAGTGTTGGATGATGAAAGTCCCAGGTCCACTCAATTTAGGAAATGA

Protein sequence

MTNYGKALRRTPNLRCHRSCHETVIVYTRNRYRALSPRFLLVKSISMDEEVGAKRSKGHGSSATMWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFELHLCWPWSWFLAVDGGRRNGRQYTRLPHFDRKTPWLYGLCGGWLGVLDDESPRSTQFRK

Homology

[Close]

BLAST of Carg19929 vs. NCBI nr
Match: KJB57280.1 (hypothetical protein B456_009G156500 [Gossypium raimondii])

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 66  WAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFELHL 125
           W +FKR + +E+ + K  GSAFKWKRL N++ SF+DN++FK+VS+LE + L+      +L
Sbjct: 7   WVLFKRFMTKEAWRWKCFGSAFKWKRL-NIKRSFVDNVVFKLVSVLEAIYLVATLCFFYL 66

Query: 126 CWPWSWFLAVDGGRRNG 143
           C  W      DG R NG
Sbjct: 67  CCGWK----CDGLRFNG 78

[Close]

BLAST of Carg19929 vs. NCBI nr
Match: EOY27743.1 (Uncharacterized protein TCM_029517 [Theobroma cacao])

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-07
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 66  WAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFELHL 125
           W +FKR +++ES + K LGSAFKWKRL N+Q+SF+D++LF+I S+LE + L+      +L
Sbjct: 125 WVLFKRLIKKESWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVLEAIFLVATLCFFYL 184

Query: 126 C 127
           C
Sbjct: 185 C 184

[Close]

BLAST of Carg19929 vs. NCBI nr
Match: XP_017978435.1 (PREDICTED: uncharacterized protein LOC18596529 [Theobroma cacao])

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-07
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 66  WAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFELHL 125
           W +FKR +++ES + K LGSAFKWKRL N+Q+SF+D++LF+I S+LE + L+      +L
Sbjct: 7   WVLFKRLIKKESWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVLEAIFLVATLCFFYL 66

Query: 126 C 127
           C
Sbjct: 67  C 66

[Close]

BLAST of Carg19929 vs. NCBI nr
Match: XP_021294841.1 (uncharacterized protein LOC110424571 [Herrania umbratica])

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-07
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 66  WAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFELHL 125
           W +FKR +++ES + K LGSAFKWKRL N+Q+SF+D++LF+I S+LE + L+      +L
Sbjct: 7   WVLFKRLIKKESWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVLEAIFLVATLCFFYL 66

Query: 126 C 127
           C
Sbjct: 67  C 66

[Close]

BLAST of Carg19929 vs. NCBI nr
Match: XP_012449072.1 (PREDICTED: uncharacterized protein LOC105772329 [Gossypium raimondii] >KJB68331.1 hypothetical protein B456_010G239100 [Gossypium raimondii])

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-06
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 65  MWAIFKRSLRRESRKMK-LLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFEL 124
           +WAIFKR L++ES K K +LGSAFKWKRL     SF+D+LLFKI S+ E + L++     
Sbjct: 6   IWAIFKRLLKKESWKWKHVLGSAFKWKRLHIHHFSFIDDLLFKIASIFEAIFLVSTLCFF 65

Query: 125 HLC 127
           +LC
Sbjct: 66  YLC 68

[Close]

BLAST of Carg19929 vs. TrEMBL
Match: tr|A0A0D2UMT5|A0A0D2UMT5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G156500 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 66  WAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFELHL 125
           W +FKR + +E+ + K  GSAFKWKRL N++ SF+DN++FK+VS+LE + L+      +L
Sbjct: 7   WVLFKRFMTKEAWRWKCFGSAFKWKRL-NIKRSFVDNVVFKLVSVLEAIYLVATLCFFYL 66

Query: 126 CWPWSWFLAVDGGRRNG 143
           C  W      DG R NG
Sbjct: 67  CCGWK----CDGLRFNG 78

[Close]

BLAST of Carg19929 vs. TrEMBL
Match: tr|A0A061GEB5|A0A061GEB5_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.2e-07
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 66  WAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFELHL 125
           W +FKR +++ES + K LGSAFKWKRL N+Q+SF+D++LF+I S+LE + L+      +L
Sbjct: 125 WVLFKRLIKKESWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVLEAIFLVATLCFFYL 184

Query: 126 C 127
           C
Sbjct: 185 C 184

[Close]

BLAST of Carg19929 vs. TrEMBL
Match: tr|A0A0D2UJV6|A0A0D2UJV6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G239100 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.3e-07
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 65  MWAIFKRSLRRESRKMK-LLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVVLMNEHFEL 124
           +WAIFKR L++ES K K +LGSAFKWKRL     SF+D+LLFKI S+ E + L++     
Sbjct: 6   IWAIFKRLLKKESWKWKHVLGSAFKWKRLHIHHFSFIDDLLFKIASIFEAIFLVSTLCFF 65

Query: 125 HLC 127
           +LC
Sbjct: 66  YLC 68

[Close]

BLAST of Carg19929 vs. TrEMBL
Match: tr|A0A1R3FVP9|A0A1R3FVP9_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 55  RSKGHGSSATMWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGV 114
           ++    SS+  W +FKR L +ES + K LGSAFKWKRL N+Q+SF D++LF+I S+LE +
Sbjct: 3   KTSSSSSSSKRWVLFKR-LIKESWRWKFLGSAFKWKRL-NIQLSFFDDVLFRIASVLEAI 62

Query: 115 VLMNEHFELHLC 127
            L+      +LC
Sbjct: 63  YLVATLCFFYLC 72

[Close]

BLAST of Carg19929 vs. TrEMBL
Match: tr|A0A1R3I7M5|A0A1R3I7M5_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_24713 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.0e-06
Identity = 31/71 (43.66%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 60  GSSATMW----AIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFKIVSMLEGVV 119
           G+S++ W     + KR +++ES + K+LGS FKWKRL N+Q+SF+D++LF+I S+LE + 
Sbjct: 3   GTSSSSWKGWVVLLKRLIKKESWRWKILGSGFKWKRL-NIQLSFIDDVLFRIASVLEAIY 62

Query: 120 LMNEHFELHLC 127
           L+      +LC
Sbjct: 63  LVATLCFFYLC 72

The following BLAST results are available for this feature:

BLAST of Carg19929 vs. NCBI nr


Match Name	E-value	Identity	Description
KJB57280.1	2.2e-07	45.45	hypothetical protein B456_009G156500 [Gossypium raimondii]	[more]
EOY27743.1	4.8e-07	50.82	Uncharacterized protein TCM_029517 [Theobroma cacao]	[more]
XP_017978435.1	4.8e-07	50.82	PREDICTED: uncharacterized protein LOC18596529 [Theobroma cacao]	[more]
XP_021294841.1	4.8e-07	50.82	uncharacterized protein LOC110424571 [Herrania umbratica]	[more]
XP_012449072.1	1.4e-06	53.97	PREDICTED: uncharacterized protein LOC105772329 [Gossypium raimondii] >KJB68331....	[more]

BLAST of Carg19929 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg19929 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19929 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0D2UMT5\|A0A0D2UMT5_GOSRA	1.4e-07	45.45	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G156500 PE=4 ...	[more]
tr\|A0A061GEB5\|A0A061GEB5_THECC	3.2e-07	50.82	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1	[more]
tr\|A0A0D2UJV6\|A0A0D2UJV6_GOSRA	9.3e-07	53.97	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G239100 PE=4 ...	[more]
tr\|A0A1R3FVP9\|A0A1R3FVP9_9ROSI	1.6e-06	47.22	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1	[more]
tr\|A0A1R3I7M5\|A0A1R3I7M5_9ROSI	6.0e-06	43.66	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_24713 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19929-RA	Carg19929-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33726:SF3	SUBFAMILY NOT NAMED	coord: 65..121
None	No IPR available	PANTHER	PTHR33726	FAMILY NOT NAMED	coord: 65..121

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19929	Cla019600	Watermelon (97103) v1	carwmB0797
Carg19929	ClCG03G007000	Watermelon (Charleston Gray)	carwcgB0773
Carg19929	CmaCh13G005480	Cucurbita maxima (Rimu)	carcmaB1109
Carg19929	CmaCh18G004660	Cucurbita maxima (Rimu)	carcmaB1110
Carg19929	CmoCh13G005790	Cucurbita moschata (Rifu)	carcmoB1080
Carg19929	Cla97C03G058250	Watermelon (97103) v2	carwmbB0837
Carg19929	Bhi08G001711	Wax gourd	carwgoB0936

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19929	Carg22531	Silver-seed gourd	carcarB438

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19929	Wax gourd	carwgoB0934
Carg19929	Silver-seed gourd	carcarB508
Carg19929	Silver-seed gourd	carcarB623
Carg19929	Cucumber (Gy14) v2	carcgybB0789
Carg19929	Cucumber (Gy14) v2	carcgybB0790
Carg19929	Cucumber (Gy14) v1	carcgyB0911
Carg19929	Cucumber (Gy14) v1	carcgyB0913
Carg19929	Cucurbita maxima (Rimu)	carcmaB1112
Carg19929	Cucurbita maxima (Rimu)	carcmaB1111
Carg19929	Cucurbita moschata (Rifu)	carcmoB1081
Carg19929	Cucurbita moschata (Rifu)	carcmoB1082
Carg19929	Cucurbita moschata (Rifu)	carcmoB1083
Carg19929	Cucurbita pepo (Zucchini)	carcpeB1123
Carg19929	Cucurbita pepo (Zucchini)	carcpeB1119
Carg19929	Cucurbita pepo (Zucchini)	carcpeB1120
Carg19929	Cucurbita pepo (Zucchini)	carcpeB1122
Carg19929	Wild cucumber (PI 183967)	carcpiB0835
Carg19929	Wild cucumber (PI 183967)	carcpiB0836
Carg19929	Cucumber (Chinese Long) v2	carcuB0815
Carg19929	Cucumber (Chinese Long) v2	carcuB0816
Carg19929	Cucumber (Chinese Long) v3	carcucB0839
Carg19929	Cucumber (Chinese Long) v3	carcucB0840
Carg19929	Bottle gourd (USVL1VR-Ls)	carlsiB734
Carg19929	Bottle gourd (USVL1VR-Ls)	carlsiB735
Carg19929	Melon (DHL92) v3.5.1	carmeB0796
Carg19929	Melon (DHL92) v3.5.1	carmeB0797
Carg19929	Melon (DHL92) v3.6.1	carmedB0808
Carg19929	Melon (DHL92) v3.6.1	carmedB0809
Carg19929	Watermelon (Charleston Gray)	carwcgB0772
Carg19929	Watermelon (97103) v1	carwmB0798
Carg19929	Watermelon (97103) v2	carwmbB0836