Carg19854 (gene) Silver-seed gourd

Overview
NameCarg19854
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription elongation factor spt6
LocationCucurbita_argyrosperma_scaffold_067 : 640460 .. 644019 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAAGGCGGTGATCTCCGATGACGAAGGTTTGACCTCGTCTCTGTTCTTTCAATTTTCGCACGGATTTTTAGGGCCCTCTTTGCGTTCTTCCCCTTTTCTCATTGGTGTGTTTCTGTAGATGAGGTCGAATTGGAAGACCGGGAACCGCTTGACGGTGACGATGTTGACGGTCACAACATGAGGGACGAAGACGACGAAGAAGATGGTTTGTATCAGGAATCGTTGGTTGTTGTTTTATTCAGTTTAATTTAATTTCGGTGTGTGTTTTTGGGTTTATATGGCTCGATTGGTTGTTTGTATGTCGGCTTTATTTTCTGGTTCGCTCGTGAGGAGTGTGTTGTTCCACCCTCCTTTGTTCTTCCGTTCGTTTTTAGTGGATGAGAAACTGGGACGAGTCCTTAAGTTATGGGCAGACTTGTTGAGCTGGGTTGGGGACTAAGGATGAAACTGAAGGGCATGGCATATTTGTAACTCATTAGGGTATGTGGCATATCCTATGAGTTCCGTGAGTCAGTGATTGTCAAATGTTTAGGTGTTGCATTAGCTATCATTAGGAATACTCGGCTTCAAGACATTAAGATAAAAAAACTTTTTTCGTGCATTCCAGGTCTTCCTTCCTAGTTATGGATGATTTGGGGTGCGAATAGAAACTTAATGGCAACTTTATGTCTATAAATGTGGTTTAGGAATGGTAACAGCTTAGAGATGTAGAAAATAGAGTATTTTTTTTTTTTGGTTAAATTATAAATTTAGTCTTCAGTCTCTTAACTTTGAGGTGTGTTTATTTGATCCTTGAACTTTCAAAATTACAAATTTAGTCTTTGAACTTTTGAACTTTTTAAAATTCATGTATCTACTAGATACAAGATTGAAAGTTTAGGATTCTAATGGACATAAGCTTTAAAATTATATGTAATAGATCAATTAATGTATAAAAAAAATTGAGTTTTTCAAGGACCAAATTTCAAGGACTTAATAGATACAAAATTGAAAGTTTAGGGACCTGTTAGATACTTTTGAAAGTTTAGGGACCAAATAGACATGAGCCACAAAGTTCATGACTAAACTTGTAGCATTTGTAACTAAAGTGAAATTGATAACCGGTCCTTTTTCTTTTGTTTGGGGAAGAGGAATCTTTTCTTAACCTAATTAGTACCTTGCGTACTTCTTAGTTGATTTTCAGGTTTATAGGGATGAATGTTTTATTCTGGGAGTTTACTATAACTAGGTGTTGCACCTTTACAATTTATGCATATGGGTGTGCTCTTAGGTTAGCTCATATTCCTTGAGCGTCTTCACTTTGTGGCTTGGCCATTGACAAGGTGCGCATGCATATGAGACTTGAGCCTTTTGATGCTACTGCTTATATTTATGGATCACCCCTTTAATGGAAAAGCTAACATTTGTTGGTTAAATGCAATTATGGAAACCTGCTAGATTTTTTAGCTTGTGAAGAATATTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAATACACGGTAACGTAATTGCTTAATTGAGGAGTTCATGTCTGTTATGCTTTGAGATCGAGCTTCTTGTTATAGGGAGCTTACAGTTATTTCTTGTTTAACTCAAGCTAATTAGAGGGTCCTTAAGTAATCCTTCCTTCGGTTTTTGATTGGGAAAGGTTGTTTCATTTTGTATATATGTTTGTACTTGGTAGGATGATTATTTAATAAAACGTTTTGATCTAAAAGGAAAGCGCCGCTGTAAGACATTGGAATTAATTTGTGGTCAAATAGTCATTATTCAGCTTATCCTTTTCATATAGTCTCTGTAGCAAAAAATAATTTTAAATGTACGGTCTTTTATTTTGCTGCTGCCAGTACCTTATTTGTAATAAGCCAATTTTTTTCAGAAGAAGAACAGGATGAGTATGAAAAGGATGGTTTCATAGTTGATGATATTGAAGAAGAAGATGAAGAAGATGTAGAGGAGAGGGAAGACAGTGATGATGAAAAGCAGAGGAAGAAGAAAAGGAAGAAAAAGTGAACTTTACTCTCTGACTTGTTGTTTAATGTTATTTTATACTTGAAATTGATATTGTCTTTCTGCCTGTTCAAATGAGTTTAGTCTGAAGTAATAGTGAAAGTAGGTCAAAGATCAGGTGCTATAATTTTTTTGGATTATTATTTGTTAATAAACACAGTGTAACACATTGGGTTGGCATATCTGTCCATCTCCCTCTTTATGTTGTCGCATATAGTGTATAGTAGGTCAAGTAGCTCTTTATGTCTAAAAGTTCTCAATAGATCTTCTATTGACCAGAGATGATTTTCACTTTCTTAGGGAGGAATATGTGCTCGATGAAGATGACTATGAACTCCTTGAGGACAACAATATTAGCATTCAACGACCAAAGGTAGTGGTACTGGATTTTGATACTGTTGCTTCATAGTATTTATTTCTGAGCATTTGTCTTCATCTTTTTCAGGGCAGCAAAAAGTTTAAGAGGCTTAAAAAAGCTCGAAGGGACAATGTGGAACCTTCTGGGTTTTCGGACGATGAGGATTTTATAGAAAGCAGCAGAGGTGGACGAACGGCTGAGGAAAAACTTAAACGTAGCTTGTTTGGTGATGATGAAGGTATACATTTGAATTCATTTTTTCTTACTGCCACATTTCTAACTGAAGTACCAAGCTACTTTCTCAAATAGTCATCTTTCTTATTACTTTTTGAAACATTATGGTGTAATTATTTGAAGCTCCACTTGAGGATATTGCGGAAGAGTTGGAACAACCTGAAGAGGAAGAAGATGTCGACATTGGAGATGAGGATGAAATGGCTGATTTCATTGTAGATGAAGAAGTTGATGAAGATGGGGCTCCCTTAAGGTTTTTTTCTTCATATATTTTGGAGCCTCAGACCACTTCTTCTAGTGTGTTTATCTATTTTATCCCCATTAATCATCTTTTTGTACATATAAAATCTCAATTTATTAACTGTTCGGTCTAGGAGGAGGAAGTTGAAGAAAAAAAAATCCAGGCAAGCACCCGGTGTTTCATCAACTGCTTTGCAGGAGGCACATGAAATTTTTGGCGATGTCGATGAGCTCCTTCAGCTTCGCAAGAGAGAATTGGATACTCATGAGTGGCGTGAGAATAGATTAGAAGATGAATTTGAACCGATTGTAATTTCTGAGAAGTATATGACAGAAAAAGATGACCAGATAAGGGAGATTGATATGCCCGAAAGAATGCAGGTTTCTTTTTATTTCTTATATAACTTCATATTGTATATGCATTCTTCGTGGGTTTTCATTTCATTTCCTTTCTTATAGATTTCAGAAGAAAGTACCGGGTCTCCTCCTATGGATGAGATGAGTCTGGACGATGAAGCCTCATGGATACATGGTCATATTGCAAATGGAATGAACTCTTTGTTTGGCAATGCCAGTGGGCAAGACCTATCTGTAACAAAGGATGATATTCTGCAGTTTCTGGATCTTGTACATGTCCAAAAATTAGATGTTAGTATTCTGTTATCTTTCTTTCTTCTCATTATGCTCATCTTTACTTGTTCGTTCTAA

mRNA sequence

ATGGGCAAGGCGGTGATCTCCGATGACGAAGATGAGGTCGAATTGGAAGACCGGGAACCGCTTGACGGTGACGATGTTGACGGTCACAACATGAGGGACGAAGACGACGAAGAAGATGAAGAAGAACAGGATGAGTATGAAAAGGATGGTTTCATAGTTGATGATATTGAAGAAGAAGATGAAGAAGATGTAGAGGAGAGGGAAGACAGTGATGATGAAAAGCAGAGGAAGAAGAAAAGGAAGAAAAAGGAGGAATATGTGCTCGATGAAGATGACTATGAACTCCTTGAGGACAACAATATTAGCATTCAACGACCAAAGGGCAGCAAAAAGTTTAAGAGGCTTAAAAAAGCTCGAAGGGACAATGTGGAACCTTCTGGGTTTTCGGACGATGAGGATTTTATAGAAAGCAGCAGAGGTGGACGAACGGCTGAGGAAAAACTTAAACGTAGCTTGTTTGGTGATGATGAAGCTCCACTTGAGGATATTGCGGAAGAGTTGGAACAACCTGAAGAGGAAGAAGATGTCGACATTGGAGATGAGGATGAAATGGCTGATTTCATTGTAGATGAAGAAGTTGATGAAGATGGGGCTCCCTTAAGGAGGAGGAAGTTGAAGAAAAAAAAATCCAGGCAAGCACCCGGTGTTTCATCAACTGCTTTGCAGGAGGCACATGAAATTTTTGGCGATGTCGATGAGCTCCTTCAGCTTCGCAAGAGAGAATTGGATACTCATGAGTGGCGTGAGAATAGATTAGAAGATGAATTTGAACCGATTGTAATTTCTGAGAAGTATATGACAGAAAAAGATGACCAGATAAGGGAGATTGATATGCCCGAAAGAATGCAGATTTCAGAAGAAAGTACCGGGTCTCCTCCTATGGATGAGATGAGTCTGGACGATGAAGCCTCATGGATACATGGTCATATTGCAAATGGAATGAACTCTTTGTTTGGCAATGCCAGTGGGCAAGACCTATCTGTAACAAAGGATGATATTCTGCAGTTTCTGGATCTTGTACATGTCCAAAAATTAGATGTTAGTATTCTGTTATCTTTCTTTCTTCTCATTATGCTCATCTTTACTTGTTCGTTCTAA

Coding sequence (CDS)

ATGGGCAAGGCGGTGATCTCCGATGACGAAGATGAGGTCGAATTGGAAGACCGGGAACCGCTTGACGGTGACGATGTTGACGGTCACAACATGAGGGACGAAGACGACGAAGAAGATGAAGAAGAACAGGATGAGTATGAAAAGGATGGTTTCATAGTTGATGATATTGAAGAAGAAGATGAAGAAGATGTAGAGGAGAGGGAAGACAGTGATGATGAAAAGCAGAGGAAGAAGAAAAGGAAGAAAAAGGAGGAATATGTGCTCGATGAAGATGACTATGAACTCCTTGAGGACAACAATATTAGCATTCAACGACCAAAGGGCAGCAAAAAGTTTAAGAGGCTTAAAAAAGCTCGAAGGGACAATGTGGAACCTTCTGGGTTTTCGGACGATGAGGATTTTATAGAAAGCAGCAGAGGTGGACGAACGGCTGAGGAAAAACTTAAACGTAGCTTGTTTGGTGATGATGAAGCTCCACTTGAGGATATTGCGGAAGAGTTGGAACAACCTGAAGAGGAAGAAGATGTCGACATTGGAGATGAGGATGAAATGGCTGATTTCATTGTAGATGAAGAAGTTGATGAAGATGGGGCTCCCTTAAGGAGGAGGAAGTTGAAGAAAAAAAAATCCAGGCAAGCACCCGGTGTTTCATCAACTGCTTTGCAGGAGGCACATGAAATTTTTGGCGATGTCGATGAGCTCCTTCAGCTTCGCAAGAGAGAATTGGATACTCATGAGTGGCGTGAGAATAGATTAGAAGATGAATTTGAACCGATTGTAATTTCTGAGAAGTATATGACAGAAAAAGATGACCAGATAAGGGAGATTGATATGCCCGAAAGAATGCAGATTTCAGAAGAAAGTACCGGGTCTCCTCCTATGGATGAGATGAGTCTGGACGATGAAGCCTCATGGATACATGGTCATATTGCAAATGGAATGAACTCTTTGTTTGGCAATGCCAGTGGGCAAGACCTATCTGTAACAAAGGATGATATTCTGCAGTTTCTGGATCTTGTACATGTCCAAAAATTAGATGTTAGTATTCTGTTATCTTTCTTTCTTCTCATTATGCTCATCTTTACTTGTTCGTTCTAA

Protein sequence

MGKAVISDDEDEVELEDREPLDGDDVDGHNMRDEDDEEDEEEQDEYEKDGFIVDDIEEEDEEDVEEREDSDDEKQRKKKRKKKEEYVLDEDDYELLEDNNISIQRPKGSKKFKRLKKARRDNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGDEDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKRELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLDDEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDVSILLSFFLLIMLIFTCSF
Homology
[Close]
BLAST of Carg19854 vs. NCBI nr
Match: XP_022996607.1 (transcription elongation factor SPT6 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 498.4 bits (1282), Expect = 2.0e-137
Identity = 343/353 (97.17%), Postives = 346/353 (98.02%), Query Frame = 0 

Query: 1   MGKAVISDDEDEVELEDREPLDGDDVDGHNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGKAVISDDEDEVELEDREPLDGDDVDGHNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGKAVISDDEDEVELEDREPLDGDDVDGHNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNISIQRPKGSKKFKRLKKARR 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NISIQRPKGSKKFKRLKKARR
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNISIQRPKGSKKFKRLKKARR 120

Query: 121 DNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGD 180
           DNVEPSGF DDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGD
Sbjct: 121 DNVEPSGFLDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGD 180

Query: 181 EDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKR 240
           EDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKR
Sbjct: 181 EDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKR 240

Query: 241 ELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLD 300
           ELDTHEW ENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLD
Sbjct: 241 ELDTHEWHENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLD 300

Query: 301 DEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDVSILLSF 354
           DEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLD+  +  +
Sbjct: 301 DEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDIPFIAMY 353

[Close]
BLAST of Carg19854 vs. NCBI nr
Match: XP_023545891.1 (transcription elongation factor SPT6 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 496.1 bits (1276), Expect = 1.0e-136
Identity = 345/353 (97.73%), Postives = 348/353 (98.58%), Query Frame = 0 

Query: 1   MGKAVISDDEDEVELEDREPLDGDDVDGHNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGKAVISDDEDEVELEDREPLDGDDVDGHN XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGKAVISDDEDEVELEDREPLDGDDVDGHN-XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNISIQRPKGSKKFKRLKKARR 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNISIQRPKGSKKFKRLKKARR
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNISIQRPKGSKKFKRLKKARR 120

Query: 121 DNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGD 180
           DNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGD
Sbjct: 121 DNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGD 180

Query: 181 EDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKR 240
           EDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKR
Sbjct: 181 EDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKR 240

Query: 241 ELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLD 300
           ELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLD
Sbjct: 241 ELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLD 300

Query: 301 DEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDVSILLSF 354
           DEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLD+  +  +
Sbjct: 301 DEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDIPFIAMY 352

[Close]
BLAST of Carg19854 vs. NCBI nr
Match: XP_022929650.1 (transcription elongation factor SPT6 homolog [Cucurbita moschata])

HSP 1 Score: 495.0 bits (1273), Expect = 2.2e-136
Identity = 345/356 (96.91%), Postives = 348/356 (97.75%), Query Frame = 0 

Query: 1   MGKAVISDDEDEVELEDREPLDGDDVDGHN---MXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGKAVISDDEDEVELEDREPLDGDDVDGHN    XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGKAVISDDEDEVELEDREPLDGDDVDGHNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNISIQRPKGSKKFKRLKK 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNISIQRPKGSKKFKRLKK
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNISIQRPKGSKKFKRLKK 120

Query: 121 ARRDNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVD 180
           ARRDNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVD
Sbjct: 121 ARRDNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVD 180

Query: 181 IGDEDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQL 240
           IGDEDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQL
Sbjct: 181 IGDEDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQL 240

Query: 241 RKRELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEM 300
           RKRELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEM
Sbjct: 241 RKRELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEM 300

Query: 301 SLDDEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDVSILLSF 354
           SLDDEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLD+  +  +
Sbjct: 301 SLDDEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDIPFIAMY 356

[Close]
BLAST of Carg19854 vs. NCBI nr
Match: XP_022996608.1 (transcription elongation factor SPT6 homolog isoform X2 [Cucurbita maxima])

HSP 1 Score: 486.5 bits (1251), Expect = 7.9e-134
Identity = 322/353 (91.22%), Postives = 325/353 (92.07%), Query Frame = 0 

Query: 1   MGKAVISDDEDEVELEDREPLDGDDVDGHNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGKAVISDDEDEVELEDREPLDGDDVDGH                  XXXXXXXXXXXXX
Sbjct: 1   MGKAVISDDEDEVELEDREPLDGDDVDGH------------------XXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNISIQRPKGSKKFKRLKKARR 120
           XXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXX ISIQRPKGSKKFKRLKKARR
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXYVLXXXXXXXXXXXXISIQRPKGSKKFKRLKKARR 120

Query: 121 DNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGD 180
           DNVEPSGF DDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGD
Sbjct: 121 DNVEPSGFLDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGD 180

Query: 181 EDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKR 240
           EDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKR
Sbjct: 181 EDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKR 240

Query: 241 ELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLD 300
           ELDTHEW ENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLD
Sbjct: 241 ELDTHEWHENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLD 300

Query: 301 DEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDVSILLSF 354
           DEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLD+  +  +
Sbjct: 301 DEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDIPFIAMY 335

[Close]
BLAST of Carg19854 vs. NCBI nr
Match: XP_022149910.1 (transcription elongation factor SPT6 homolog [Momordica charantia])

HSP 1 Score: 393.7 bits (1010), Expect = 7.0e-106
Identity = 208/254 (81.89%), Postives = 223/254 (87.80%), Query Frame = 0 

Query: 100 NISIQRPKGSKKFKRLKKARRDNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAP 159
           NI+IQRPKGSKKFKRLKKA+RDNVEPSGFSDDEDF+ESSRGGRTAEEKLKRSLFGDDEAP
Sbjct: 100 NITIQRPKGSKKFKRLKKAQRDNVEPSGFSDDEDFVESSRGGRTAEEKLKRSLFGDDEAP 159

Query: 160 LEDIAEELEQPEEEEDVDIGDEDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSST 219
           LEDIA                    ADFIVDEEVDEDGAP+RR+KLKKKKSRQAPGVSST
Sbjct: 160 LEDIAXXXXXXXXXXXXXXXXXXXXADFIVDEEVDEDGAPVRRKKLKKKKSRQAPGVSST 219

Query: 220 ALQEAHEIFGDVDELLQLRKRELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMP 279
           ALQEAHEIFGDVDELLQLRKRELD+HEW E RLEDEFEPIVISEKYMTEKDDQIREID+P
Sbjct: 220 ALQEAHEIFGDVDELLQLRKRELDSHEWHEKRLEDEFEPIVISEKYMTEKDDQIREIDIP 279

Query: 280 ERMQISEESTGSPPMDEMSLDDEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDL 339
           ERMQISEESTG PPMDE+SL+DE SWIHGH+ANG NSLFG ASGQDLSV KDDIL+FLDL
Sbjct: 280 ERMQISEESTGPPPMDEISLEDETSWIHGHLANGTNSLFGTASGQDLSVVKDDILRFLDL 339

Query: 340 VHVQKLDVSILLSF 354
           VH+QKLD+  +  +
Sbjct: 340 VHIQKLDIPFITMY 353

[Close]
BLAST of Carg19854 vs. TAIR10
Match: AT1G65440.1 (global transcription factor group B1)

HSP 1 Score: 155.2 bits (391), Expect = 7.6e-38
Identity = 76/139 (54.68%), Postives = 108/139 (77.70%), Query Frame = 0 

Query: 215 GVSSTALQEAHEIFGDVDELLQLRKRELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIR 274
           G   TA+++A+EIFGDVDELL +RK+ L +++  E RLEDEFEP V+SEKYMT  DD+IR
Sbjct: 208 GSDITAMRDANEIFGDVDELLTIRKKGLASNQRMERRLEDEFEPTVLSEKYMTGNDDEIR 267

Query: 275 EIDMPERMQISEESTGSPPMDEMSLDDEASWIHGHIANGMNSLFGNASGQDLSVTKDDIL 334
           ++D+PERMQISEESTGSPP+DE+S+++E++WI+  +A+ +    G   G+  SV KDDI 
Sbjct: 268 QLDIPERMQISEESTGSPPVDEISIEEESNWIYAQLASQLRESDGTFDGRGFSVNKDDIA 327

Query: 335 QFLDLVHVQKLDVSILLSF 354
           +FL+L HVQKL++  +  +
Sbjct: 328 KFLELHHVQKLEIPFIAMY 346

[Close]
BLAST of Carg19854 vs. TAIR10
Match: AT1G63210.1 (Transcription elongation factor Spt6)

HSP 1 Score: 136.3 bits (342), Expect = 3.7e-32
Identity = 68/149 (45.64%), Postives = 106/149 (71.14%), Query Frame = 0 

Query: 205 LKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKRELDTHEWRENRLEDEFEPIVISEK 264
           +++KK +   G  S AL+ A+++FGD +ELL+LRK++L  +E  E +LEDEFEP+V+SEK
Sbjct: 1   MRRKKMKYKQGTDSNALRYANDVFGDPEELLKLRKKDLKYNEKIERKLEDEFEPMVLSEK 60

Query: 265 YMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLDDEASWIHGHIANGMNSLFGNASGQ 324
           YMTEKDD+IR++D+PERMQI EE+ G   +D+MS+ +E++WI+  +            GQ
Sbjct: 61  YMTEKDDEIRKLDVPERMQIFEEAIGIVSLDDMSIQEESNWIYARLL--------QEQGQ 120

Query: 325 DLSVTKDDILQFLDLVHVQKLDVSILLSF 354
              + KDDI++FL++ HVQKL++  +  +
Sbjct: 121 GCLINKDDIVKFLEMFHVQKLEIPFIAMY 141

[Close]
BLAST of Carg19854 vs. Swiss-Prot
Match: sp|A8MS85|SPT61_ARATH (Transcription elongation factor SPT6 homolog OS=Arabidopsis thaliana OX=3702 GN=SPT6 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-36
Identity = 76/139 (54.68%), Postives = 108/139 (77.70%), Query Frame = 0 

Query: 215 GVSSTALQEAHEIFGDVDELLQLRKRELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIR 274
           G   TA+++A+EIFGDVDELL +RK+ L +++  E RLEDEFEP V+SEKYMT  DD+IR
Sbjct: 208 GSDITAMRDANEIFGDVDELLTIRKKGLASNQRMERRLEDEFEPTVLSEKYMTGNDDEIR 267

Query: 275 EIDMPERMQISEESTGSPPMDEMSLDDEASWIHGHIANGMNSLFGNASGQDLSVTKDDIL 334
           ++D+PERMQISEESTGSPP+DE+S+++E++WI+  +A+ +    G   G+  SV KDDI 
Sbjct: 268 QLDIPERMQISEESTGSPPVDEISIEEESNWIYAQLASQLRESDGTFDGRGFSVNKDDIA 327

Query: 335 QFLDLVHVQKLDVSILLSF 354
           +FL+L HVQKL++  +  +
Sbjct: 328 KFLELHHVQKLEIPFIAMY 346

[Close]
BLAST of Carg19854 vs. Swiss-Prot
Match: sp|Q9CAM1|SPT62_ARATH (Transcription elongation factor SPT6-like OS=Arabidopsis thaliana OX=3702 GN=At1g63210 PE=3 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.6e-31
Identity = 68/149 (45.64%), Postives = 106/149 (71.14%), Query Frame = 0 

Query: 205 LKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKRELDTHEWRENRLEDEFEPIVISEK 264
           +++KK +   G  S AL+ A+++FGD +ELL+LRK++L  +E  E +LEDEFEP+V+SEK
Sbjct: 1   MRRKKMKYKQGTDSNALRYANDVFGDPEELLKLRKKDLKYNEKIERKLEDEFEPMVLSEK 60

Query: 265 YMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLDDEASWIHGHIANGMNSLFGNASGQ 324
           YMTEKDD+IR++D+PERMQI EE+ G   +D+MS+ +E++WI+  +            GQ
Sbjct: 61  YMTEKDDEIRKLDVPERMQIFEEAIGIVSLDDMSIQEESNWIYARLL--------QEQGQ 120

Query: 325 DLSVTKDDILQFLDLVHVQKLDVSILLSF 354
              + KDDI++FL++ HVQKL++  +  +
Sbjct: 121 GCLINKDDIVKFLEMFHVQKLEIPFIAMY 141

[Close]
BLAST of Carg19854 vs. Swiss-Prot
Match: sp|Q62383|SPT6H_MOUSE (Transcription elongation factor SPT6 OS=Mus musculus OX=10090 GN=Supt6h PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 7.3e-06
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 0 

Query: 196 DGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFG---DVDELL----------------- 255
           DG PL++ K +KK     PG +  ALQEA EIFG   D DE                   
Sbjct: 189 DGQPLKKPKWRKK----LPGYTDAALQEAQEIFGVDFDYDEFEKXXXXXXXXXXXXXXXX 248

Query: 256 -----QLRKRELDTHEWRENR--LEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEES 308
                ++R R   T + R +R  + + +EP  +   ++T++D++IR  D+PER Q+    
Sbjct: 249 XXXEGEIRVRPKKTTKKRVSRRSIFEMYEPSELESSHLTDQDNEIRATDLPERFQLRSIP 308

[Close]
BLAST of Carg19854 vs. Swiss-Prot
Match: sp|Q7KZ85|SPT6H_HUMAN (Transcription elongation factor SPT6 OS=Homo sapiens OX=9606 GN=SUPT6H PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 2.1e-05
Identity = 44/142 (30.99%), Postives = 67/142 (47.18%), Query Frame = 0 

Query: 193 VDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFG---DVDELLQLRKREL------- 252
           VD+DG PL++ K +KK     PG +  ALQEA EIFG   D DE  +             
Sbjct: 186 VDDDGQPLKKPKWRKK----LPGYTDAALQEAQEIFGVDFDYDEFEKYXXXXXXXXXXXX 245

Query: 253 ---------------DTHEWRENR--LEDEFEPIVISEKYMTEKDDQIREIDMPERMQIS 308
                           T + R +R  + + +EP  +   ++T++D++IR  D+PER Q+ 
Sbjct: 246 XXXXXXXXXXXXXPKKTTKKRVSRRSIFEMYEPSELESSHLTDQDNEIRATDLPERFQLR 305

[Close]
BLAST of Carg19854 vs. Swiss-Prot
Match: sp|Q9W420|SPT6H_DROME (Transcription elongation factor SPT6 OS=Drosophila melanogaster OX=7227 GN=Spt6 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.1e-04
Identity = 62/275 (22.55%), Postives = 113/275 (41.09%), Query Frame = 0 

Query: 110 KKFKRLKKARRDNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQ 169
           K+FKRL++   +  +      DE  +          E++   LF +++  +   +E   +
Sbjct: 111 KRFKRLRRIHDNESDGEEQHVDEGLV---------REQIAEQLFDENDESIGHRSERSHR 170

Query: 170 PEEEEDVDIGDEDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFG 229
             ++ D D+  E +  DFI    VD++G P+  +K K++     P  +  +LQE  +IFG
Sbjct: 171 EADDYD-DVDTESDADDFI----VDDNGRPIAEKKKKRR-----PIFTDASLQEGQDIFG 230

Query: 230 ---DVDEL--------------------------LQLRKRELDTHEWRENRLEDEFEPIV 289
              D D+                            +++K+           + D +EP  
Sbjct: 231 VDFDYDDFSKYXXXXXXXXXXXXXXXXXLGVGDDTRVKKKXXXXXXXXXXTIFDIYEPSE 290

Query: 290 ISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLDDEASWIH-----GHIANGMN 349
           +   + T+ D++IR+ D+PERMQ+ E      P     LD EA WI+      H  +   
Sbjct: 291 LKRGHFTDMDNEIRKTDIPERMQLREVPVTPVPEGSDELDLEAEWIYKYAFCKHTVSEQE 350

Query: 350 SLFGNASGQDLSVTKDDILQFLDLVHVQKLDVSIL 351
                   +    T + I Q L+ +  Q+L+V  +
Sbjct: 351 KPESREKMRKPPTTVNKIKQTLEFIRNQQLEVPFI 366

[Close]
BLAST of Carg19854 vs. TrEMBL
Match: tr|A0A1S3B3S8|A0A1S3B3S8_CUCME (Transcription elongation factor spt6 OS=Cucumis melo OX=3656 GN=LOC103485847 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.4e-89
Identity = 268/338 (79.29%), Postives = 278/338 (82.25%), Query Frame = 0 

Query: 16  EDREPLDGDDVDGHNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 75
           +DREPLDGDDVDGHNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 8   DDREPLDGDDVDGHNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 67

Query: 76  XXXXXXXXXXXXXXXXXXXXXXXXNISIQRPKGSKKFKRLKKARRDNVEPSGFSDDEDFI 135
           XXXXXXXXXXXXXXXXXXXXXXX NISIQRPKGSKKFKRLKKARRDN+EPSGFSDDEDF+
Sbjct: 68  XXXXXXXXXXXXXXXXXXXXXXXNNISIQRPKGSKKFKRLKKARRDNLEPSGFSDDEDFV 127

Query: 136 ESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGDEDEMADFIVDEEVDE 195
           ESSRGGRTAEEKLKRSLFGDDEAPLE                                  
Sbjct: 128 ESSRGGRTAEEKLKRSLFGDDEAPLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 187

Query: 196 DGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKRELDTHEWRENRLEDE 255
                           QAPGVSSTALQEAHEIFGDVDELLQLRKRELDT EWRE RLEDE
Sbjct: 188 XXXXXXXXXXXXXXXXQAPGVSSTALQEAHEIFGDVDELLQLRKRELDTQEWREKRLEDE 247

Query: 256 FEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLDDEASWIHGHIANGMN 315
           FEPIVISEKYMTEKDDQIREID+PERMQISEESTGSPP D+ SLDDEASWIHGHIANGMN
Sbjct: 248 FEPIVISEKYMTEKDDQIREIDIPERMQISEESTGSPPTDDASLDDEASWIHGHIANGMN 307

Query: 316 SLFGNASGQDLSVTKDDILQFLDLVHVQKLDVSILLSF 354
           SLF NASGQDLSVTKDDIL++LDLVHVQKLD+  +  +
Sbjct: 308 SLFSNASGQDLSVTKDDILRYLDLVHVQKLDIPFIAMY 345

[Close]
BLAST of Carg19854 vs. TrEMBL
Match: tr|A0A0A0LKK6|A0A0A0LKK6_CUCSA (Transcription elongation factor spt6 OS=Cucumis sativus OX=3659 GN=Csa_2G075460 PE=3 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.2e-87
Identity = 267/342 (78.07%), Postives = 278/342 (81.29%), Query Frame = 0 

Query: 9   DEDEVELEDREPLDGDDVDGHNMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
           D DE   +DREPLDGDDVDGHNM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 4   DTDE---DDREPLDGDDVDGHNMGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 63

Query: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNISIQRPKGSKKFKRLKKARRDNVEPSGF 128
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NISIQRPKGSKKFKRLKKARRDN+EPSGF
Sbjct: 64  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNISIQRPKGSKKFKRLKKARRDNLEPSGF 123

Query: 129 SDDEDFIESSRGGRTAEEKLKRSLFGDDEAPLEDIAEELEQPEEEEDVDIGDEDEMADFI 188
           SDDEDF+ESSRGGRTAEEKLKRSLFGDDEAPLE                           
Sbjct: 124 SDDEDFVESSRGGRTAEEKLKRSLFGDDEAPLEXXXXXXXXXXXXXXXXXXXXXXXXXXX 183

Query: 189 VDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIFGDVDELLQLRKRELDTHEWR 248
                                  QAPGVSSTALQEAHEIFGDVDELLQLRKRELDT EWR
Sbjct: 184 XXXXXXXXXXXXXXXXXXXXXXXQAPGVSSTALQEAHEIFGDVDELLQLRKRELDTQEWR 243

Query: 249 ENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEESTGSPPMDEMSLDDEASWIHG 308
           E RLEDEFEPIVISEKYMTEKDDQIREID+PERMQISEESTGSPP D+ SLDDEASWIHG
Sbjct: 244 EKRLEDEFEPIVISEKYMTEKDDQIREIDIPERMQISEESTGSPPTDDASLDDEASWIHG 303

Query: 309 HIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDVSIL 351
           HIANG++SL  NASGQDLSVTKDDIL++LDLVHVQKLD+  +
Sbjct: 304 HIANGVSSLSSNASGQDLSVTKDDILRYLDLVHVQKLDIPFI 342

[Close]
BLAST of Carg19854 vs. TrEMBL
Match: tr|M5WFF3|M5WFF3_PRUPE (Transcription elongation factor spt6 OS=Prunus persica OX=3760 GN=PRUPE_ppa000164mg PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.2e-82
Identity = 174/256 (67.97%), Postives = 211/256 (82.42%), Query Frame = 0 

Query: 100 NISIQRPKGSKKFKRLKKARR-DNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEA 159
           N+   R K   KFKRLKKA+R    EP G SD+E+F+ S + GRTAEEKLKR+LFGDDE 
Sbjct: 23  NVIAPRRKAG-KFKRLKKAQRYGEGEPGGLSDEEEFVGSGKSGRTAEEKLKRTLFGDDEG 82

Query: 160 -PLEDIAEELEQPEEEEDVDIGDEDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVS 219
            PLEDIAEE E  E E+D ++G+EDEMADFIVDEE DE GAP+R+RKLKKKKSRQAPGVS
Sbjct: 83  PPLEDIAEEEEPAEAEDDGEVGEEDEMADFIVDEEFDETGAPVRQRKLKKKKSRQAPGVS 142

Query: 220 STALQEAHEIFGDVDELLQLRKRELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREID 279
           S+ALQEAHEIFGDVDELLQLRK+ LD+ EWRE RLEDEFEPIV+SEKYMTEKDDQIRE+D
Sbjct: 143 SSALQEAHEIFGDVDELLQLRKQGLDSSEWRERRLEDEFEPIVLSEKYMTEKDDQIRELD 202

Query: 280 MPERMQISEESTGSPPMDEMSLDDEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFL 339
           +PERMQI EESTGSPP+D +S+DDE++WI+  +A+G   LF + +G   S+++DDI++FL
Sbjct: 203 VPERMQIYEESTGSPPLDRISMDDESTWIYNQLASGTVPLF-SKTGLGNSISRDDIIRFL 262

Query: 340 DLVHVQKLDVSILLSF 354
           DL HVQKLD+  +  +
Sbjct: 263 DLHHVQKLDIPFIAMY 276

[Close]
BLAST of Carg19854 vs. TrEMBL
Match: tr|A0A251N7E8|A0A251N7E8_PRUPE (Transcription elongation factor spt6 OS=Prunus persica OX=3760 GN=PRUPE_7G019900 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.2e-82
Identity = 171/245 (69.80%), Postives = 207/245 (84.49%), Query Frame = 0 

Query: 111 KFKRLKKARR-DNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEA-PLEDIAEELE 170
           KFKRLKKA+R    EP G SD+E+F+ S + GRTAEEKLKR+LFGDDE  PLEDIAEE E
Sbjct: 111 KFKRLKKAQRYGEGEPGGLSDEEEFVGSGKSGRTAEEKLKRTLFGDDEGPPLEDIAEEEE 170

Query: 171 QPEEEEDVDIGDEDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIF 230
             E E+D ++G+EDEMADFIVDEE DE GAP+R+RKLKKKKSRQAPGVSS+ALQEAHEIF
Sbjct: 171 PAEAEDDGEVGEEDEMADFIVDEEFDETGAPVRQRKLKKKKSRQAPGVSSSALQEAHEIF 230

Query: 231 GDVDELLQLRKRELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEES 290
           GDVDELLQLRK+ LD+ EWRE RLEDEFEPIV+SEKYMTEKDDQIRE+D+PERMQI EES
Sbjct: 231 GDVDELLQLRKQGLDSSEWRERRLEDEFEPIVLSEKYMTEKDDQIRELDVPERMQIYEES 290

Query: 291 TGSPPMDEMSLDDEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDVS 350
           TGSPP+D +S+DDE++WI+  +A+G   LF + +G   S+++DDI++FLDL HVQKLD+ 
Sbjct: 291 TGSPPLDRISMDDESTWIYNQLASGTVPLF-SKTGLGNSISRDDIIRFLDLHHVQKLDIP 350

Query: 351 ILLSF 354
            +  +
Sbjct: 351 FIAMY 354

[Close]
BLAST of Carg19854 vs. TrEMBL
Match: tr|A0A251N586|A0A251N586_PRUPE (Transcription elongation factor spt6 OS=Prunus persica OX=3760 GN=PRUPE_7G019900 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.2e-82
Identity = 171/245 (69.80%), Postives = 207/245 (84.49%), Query Frame = 0 

Query: 111 KFKRLKKARR-DNVEPSGFSDDEDFIESSRGGRTAEEKLKRSLFGDDEA-PLEDIAEELE 170
           KFKRLKKA+R    EP G SD+E+F+ S + GRTAEEKLKR+LFGDDE  PLEDIAEE E
Sbjct: 111 KFKRLKKAQRYGEGEPGGLSDEEEFVGSGKSGRTAEEKLKRTLFGDDEGPPLEDIAEEEE 170

Query: 171 QPEEEEDVDIGDEDEMADFIVDEEVDEDGAPLRRRKLKKKKSRQAPGVSSTALQEAHEIF 230
             E E+D ++G+EDEMADFIVDEE DE GAP+R+RKLKKKKSRQAPGVSS+ALQEAHEIF
Sbjct: 171 PAEAEDDGEVGEEDEMADFIVDEEFDETGAPVRQRKLKKKKSRQAPGVSSSALQEAHEIF 230

Query: 231 GDVDELLQLRKRELDTHEWRENRLEDEFEPIVISEKYMTEKDDQIREIDMPERMQISEES 290
           GDVDELLQLRK+ LD+ EWRE RLEDEFEPIV+SEKYMTEKDDQIRE+D+PERMQI EES
Sbjct: 231 GDVDELLQLRKQGLDSSEWRERRLEDEFEPIVLSEKYMTEKDDQIRELDVPERMQIYEES 290

Query: 291 TGSPPMDEMSLDDEASWIHGHIANGMNSLFGNASGQDLSVTKDDILQFLDLVHVQKLDVS 350
           TGSPP+D +S+DDE++WI+  +A+G   LF + +G   S+++DDI++FLDL HVQKLD+ 
Sbjct: 291 TGSPPLDRISMDDESTWIYNQLASGTVPLF-SKTGLGNSISRDDIIRFLDLHHVQKLDIP 350

Query: 351 ILLSF 354
            +  +
Sbjct: 351 FIAMY 354

The following BLAST results are available for this feature:
BLAST of Carg19854 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022996607.12.0e-13797.17transcription elongation factor SPT6 homolog isoform X1 [Cucurbita maxima][more]
XP_023545891.11.0e-13697.73transcription elongation factor SPT6 homolog [Cucurbita pepo subsp. pepo][more]
XP_022929650.12.2e-13696.91transcription elongation factor SPT6 homolog [Cucurbita moschata][more]
XP_022996608.17.9e-13491.22transcription elongation factor SPT6 homolog isoform X2 [Cucurbita maxima][more]
XP_022149910.17.0e-10681.89transcription elongation factor SPT6 homolog [Momordica charantia][more]
BLAST of Carg19854 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G65440.17.6e-3854.68global transcription factor group B1[more]
AT1G63210.13.7e-3245.64Transcription elongation factor Spt6[more]
BLAST of Carg19854 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A8MS85|SPT61_ARATH1.4e-3654.68Transcription elongation factor SPT6 homolog OS=Arabidopsis thaliana OX=3702 GN=... [more]
sp|Q9CAM1|SPT62_ARATH6.6e-3145.64Transcription elongation factor SPT6-like OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
sp|Q62383|SPT6H_MOUSE7.3e-0631.65Transcription elongation factor SPT6 OS=Mus musculus OX=10090 GN=Supt6h PE=1 SV=... [more]
sp|Q7KZ85|SPT6H_HUMAN2.1e-0530.99Transcription elongation factor SPT6 OS=Homo sapiens OX=9606 GN=SUPT6H PE=1 SV=2[more]
sp|Q9W420|SPT6H_DROME3.1e-0422.55Transcription elongation factor SPT6 OS=Drosophila melanogaster OX=7227 GN=Spt6 ... [more]
BLAST of Carg19854 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B3S8|A0A1S3B3S8_CUCME1.4e-8979.29Transcription elongation factor spt6 OS=Cucumis melo OX=3656 GN=LOC103485847 PE=... [more]
tr|A0A0A0LKK6|A0A0A0LKK6_CUCSA2.2e-8778.07Transcription elongation factor spt6 OS=Cucumis sativus OX=3659 GN=Csa_2G075460 ... [more]
tr|M5WFF3|M5WFF3_PRUPE1.2e-8267.97Transcription elongation factor spt6 OS=Prunus persica OX=3760 GN=PRUPE_ppa00016... [more]
tr|A0A251N7E8|A0A251N7E8_PRUPE1.2e-8269.80Transcription elongation factor spt6 OS=Prunus persica OX=3760 GN=PRUPE_7G019900... [more]
tr|A0A251N586|A0A251N586_PRUPE1.2e-8269.80Transcription elongation factor spt6 OS=Prunus persica OX=3760 GN=PRUPE_7G019900... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000991transcription factor activity, core RNA polymerase II binding
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
GO:0032784regulation of DNA-templated transcription, elongation
Vocabulary: INTERPRO
TermDefinition
IPR017072TF_Spt6
IPR028083Spt6_acidic_N_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032784 regulation of DNA-templated transcription, elongation
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
molecular_function GO:0000991 transcription factor activity, core RNA polymerase II binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19854-RACarg19854-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.150.850coord: 254..316
e-value: 2.1E-5
score: 26.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..193
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..157
IPR028083Spt6 acidic, N-terminal domainPFAMPF14632SPT6_acidiccoord: 33..121
e-value: 1.7E-15
score: 57.3
IPR017072Transcription elongation factor Spt6PANTHERPTHR10145TRANSCRIPTION ELONGATION FACTOR SPT6coord: 7..348