Carg19777 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19777
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein FAR1-RELATED SEQUENCE like
Location	Cucurbita_argyrosperma_scaffold_143 : 271948 .. 272877 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATCGGAGCCCTAGAAAGTGCCGGCGAAGGGGAATCATCCACCGTCACCGTCACTGTCACTGGTACTCTAAGGATCTTGAGGGAGATGGAAGAAACCTAAGAATAAAATTAATGAATTAATGATTTGAACTGTTCTTCTTTCTTCTCAATTGCCTCAAGTAGTTTCAGTTTCCTCTCCGATGTTTTTAGCTTATGATTTTGCGAATTTTACTTTCTTCTCGAATATGGAAAGTTTAGGACTCTCAATTAGTTGTACAAATCTTCAGGTTGTTAAACAAGATAGTTTTTATATCTTTGTGTTATCGGTATATTCGAGAAAATTGAGGTTCGTTCATTCTGTGTAGCCGCGATTATATCTCTCTAAGGATCGTGAGGGAGATGGAAGAAACCTCTCCTGATCCTTGTGTAGTATTCCTTTAGAATGAGTGGTGGCCGGCAGCGGACCCTCGGGGTTGGGATTCAGCATATTTTAGACTATCTGAAACGAATGCAGGCTGAGAATCCTGCTTTTTACTATGCAGTTCAGGGCGATGGAGATCACTCTGGGTGGAGTATATTGGGAATCGGAATGTGGGTACTTGACTGGATGCTCCTCCATTGATCTTGACTTGCTTCATTGCATTCATTCATTCTTTGCTTAACTATCCCAGATAGGCTTAACCAAGATGCTGTTGCAGAGGTTCTTCCAGGAACCCGCCATTGTTTTTGCAGGTGGGCTATATTCAGAGAACCACAGGGGAAGTTGACTCATCTCTGTCAATCTCATTCTACTTTCGAAGCTGAATTTAGAAAAATGAGTTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAGTATTACATTATGGACAATGAATGGCTTCAATTAATGTATAGTGCTAGACAACAGTGGGGGTACCTGTTTATG

mRNA sequence

TGATCGGAGCCCTAGAAAGTGCCGGCGAAGGGGAATCATCCACCGTCACCGTCACTTATTCCTTTAGAATGAGTGGTGGCCGGCAGCGGACCCTCGGGGTTGGGATTCAGCATATTTTAGACTATCTGAAACGAATGCAGGCTGAGAATCCTGCTTTTTACTATGCAGTTCAGGGCGATGGAGATCACTCTGGGTGGAGTATATTGGGAATCGGAATGTGGATAGGCTTAACCAAGATGCTGTTGCAGAGGTTCTTCCAGGAACCCGCCATTGTTTTTGCAGGTGGGCTATATTCAGAGAACCACAGGGGAATTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAGTATTACATTATGGACAATGAATGGCTTCAATTAATGTATAGTGCTAGACAACAGTGGGGGTACCTGTTTATG

Coding sequence (CDS)

ATGAGTGGTGGCCGGCAGCGGACCCTCGGGGTTGGGATTCAGCATATTTTAGACTATCTGAAACGAATGCAGGCTGAGAATCCTGCTTTTTACTATGCAGTTCAGGGCGATGGAGATCACTCTGGGTGGAGTATATTGGGAATCGGAATGTGGATAGGCTTAACCAAGATGCTGTTGCAGAGGTTCTTCCAGGAACCCGCCATTGTTTTTGCAGGTGGGCTATATTCAGAGAACCACAGGGGAATTAATGAGGCTGCGACATTTGAAGAATTTGAGTCTTGTTGGGAAGCTCTTCTGAATAAGTATTACATTATGGACAATGAATGGCTTCAATTAATGTATAGTGCTAGACAACAGTGGGGGTACCTGTTTATG

Protein sequence

MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQRFFQEPAIVFAGGLYSENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQWGYLFM

Homology

[Close]

BLAST of Carg19777 vs. NCBI nr
Match: XP_022947931.1 (uncharacterized protein LOC111451664 isoform X3 [Cucurbita moschata])

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 66/80 (82.50%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 1  MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQ 60
          MSGGRQRTLGVGIQHILD LKRMQAENPAFYYAVQGDGDHSGWSILGIGM          
Sbjct: 1  MSGGRQRTLGVGIQHILDDLKRMQAENPAFYYAVQGDGDHSGWSILGIGM---------- 60

Query: 61 RFFQEPAIVFAGGLYSENHR 81
           FFQEPAIVFA GLYSE HR
Sbjct: 61 -FFQEPAIVFASGLYSEKHR 69

[Close]

BLAST of Carg19777 vs. NCBI nr
Match: XP_022944451.1 (protein FAR1-RELATED SEQUENCE 9 [Cucurbita moschata] >XP_022944452.1 protein FAR1-RELATED SEQUENCE 9 [Cucurbita moschata])

HSP 1 Score: 124.4 bits (311), Expect = 2.7e-25
Identity = 81/226 (35.84%), Postives = 96/226 (42.48%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQ 60
           MSGGRQRTLGVG+QH+LD+LKRMQAENPAFYYAVQGDGD SG +I     W   T  +  
Sbjct: 1   MSGGRQRTLGVGVQHVLDHLKRMQAENPAFYYAVQGDGDQSGGNI----FWADATSRMNY 60

Query: 61  RFFQEPAIV---FAGGLY--------SENHRG---------------------------- 120
            +F +  ++   F    Y          NH G                            
Sbjct: 61  SYFGDTVVLDTTFRKNQYRVPLAAFTGFNHHGQPVLFGCALVLHESESSFIWLFQTWLQA 120

Query: 121 ------------------------------------------------------------ 126
                                                                       
Sbjct: 121 MSGRQPISITTDPERLIQVAVVQVLPGTRHRFCKWAIFRETLEKLSHLCQSHPTFETEFR 180

[Close]

BLAST of Carg19777 vs. NCBI nr
Match: XP_023513010.1 (protein FAR1-RELATED SEQUENCE 9-like [Cucurbita pepo subsp. pepo] >XP_023513011.1 protein FAR1-RELATED SEQUENCE 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 2.7e-25
Identity = 81/226 (35.84%), Postives = 96/226 (42.48%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQ 60
           MSGGRQRTLGVG+QH+LD+LKRMQAENPAFYYAVQGDGD SG +I     W   T  +  
Sbjct: 1   MSGGRQRTLGVGVQHVLDHLKRMQAENPAFYYAVQGDGDQSGGNI----FWADATSRMNY 60

Query: 61  RFFQEPAIV---FAGGLY--------SENHRG---------------------------- 120
            +F +  ++   F    Y          NH G                            
Sbjct: 61  SYFGDTVVLDTTFRKNQYRVPLAAFTGFNHHGQPVLFGCALVLHESESSFIWLFQTWLQA 120

Query: 121 ------------------------------------------------------------ 126
                                                                       
Sbjct: 121 MSGRQPISITTDPERLIQVAVAQVLPGTRHRFCKWAIFRETLEKLSHLCQSHPTFETEFR 180

[Close]

BLAST of Carg19777 vs. NCBI nr
Match: XP_008448156.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 86/223 (38.57%), Postives = 99/223 (44.39%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD-HSGWSILGIG-------MWI 60
           MSGGRQRTL VGIQH+LDYLKRMQAENPAFYYAVQGDGD HSG +I            + 
Sbjct: 1   MSGGRQRTLVVGIQHVLDYLKRMQAENPAFYYAVQGDGDHHSGANIFWADATCRMNYTYF 60

Query: 61  GLTKMLLQRF----FQEPAIVFAG--------------GLY------------------- 120
           G T +L   F    ++ P   F+G               LY                   
Sbjct: 61  GDTVVLDTTFRTNQYRVPLAAFSGFNHHGQPVLFGCALVLYESESSFIWLFQTWLQAMSG 120

Query: 121 -----------------------------------------------------SENHRGI 126
                                                                +E  + +
Sbjct: 121 RQPISITTDPDRLIQVAVAQVLPGTRHRFCKWAIFRETQEKLSHLCQSHPTFETEFRKCV 180

[Close]

BLAST of Carg19777 vs. NCBI nr
Match: XP_022985850.1 (protein FAR1-RELATED SEQUENCE 9-like [Cucurbita maxima] >XP_022985851.1 protein FAR1-RELATED SEQUENCE 9-like [Cucurbita maxima])

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 78/222 (35.14%), Postives = 95/222 (42.79%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILG-----------IG 60
           MSGGRQRTLGVG+QH+LD+LKRMQAENPA YYAVQGDGD SG +I              G
Sbjct: 1   MSGGRQRTLGVGVQHVLDHLKRMQAENPALYYAVQGDGDQSGGNIFWADATSRMNYSYFG 60

Query: 61  MWIGLTKMLLQRFFQEPAIVFAG------------------------------------- 120
             + L     ++ ++ P   F G                                     
Sbjct: 61  DTVVLDTTFRKKQYRVPLAAFTGFNHHGQPVLFGCALVLHESESSFIWLFQTWLQAMSGR 120

Query: 121 -------------------------------------------------GLYSENHRGIN 126
                                                               +E  + +N
Sbjct: 121 QPISITTDPERLIQVAVAQVLPGTRHRFCKWAIFRETLEKLSHLCQSHPTFETEFRKCVN 180

[Close]

BLAST of Carg19777 vs. TAIR10
Match: AT2G27110.1 (FAR1-related sequence 3)

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-08
Identity = 54/217 (24.88%), Postives = 76/217 (35.02%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD--------------------- 60
           M+   +RT+G    ++L+Y KRMQAENP F+YAVQ D D                     
Sbjct: 185 MATNTKRTIGRDAHNLLEYFKRMQAENPGFFYAVQLDEDNQMSNVFWADSRSRVAYTHFG 244

Query: 61  -------------------------HSGWSIL-GIGM--------WIGLTKMLLQRFFQE 120
                                    H G +IL G  +        +I L K  L     +
Sbjct: 245 DTVTLDTRYRCNQFRVPFAPFTGVNHHGQAILFGCALILDESDTSFIWLFKTFLTAMRDQ 304

[Close]

BLAST of Carg19777 vs. TAIR10
Match: AT4G38180.1 (FAR1-related sequence 5)

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-08
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 76  SENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQW 121
           S+ H+ +N   + E+FE CW +LL+KY + D+EWLQ +YS R+QW
Sbjct: 410 SDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQW 454

HSP 2 Score: 47.4 bits (111), Expect = 7.7e-06
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHS 42
           M   RQ+++   IQ +LDYL++M A+NP F+Y+VQG  D S
Sbjct: 238 MRNNRQKSIEGEIQLLLDYLRQMNADNPNFFYSVQGSEDQS 278

[Close]

BLAST of Carg19777 vs. TAIR10
Match: AT4G38170.1 (FAR1-related sequence 9)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 82  INEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQWGYLFM 126
           + E  T  EFE+ W++++ +YY+ DN+WLQ +Y+ARQQW  +F+
Sbjct: 181 VTETETAAEFEASWDSIVRRYYMEDNDWLQSIYNARQQWVRVFI 224

HSP 2 Score: 42.0 bits (97), Expect = 3.2e-04
Identity = 15/32 (46.88%), Postives = 23/32 (71.88%), Query Frame = 0


Query: 13 IQHILDYLKRMQAENPAFYYAVQGDGDHSGWS 45
          ++H+L+YLKR Q ENP F YA++ D  +  W+
Sbjct: 18 VEHVLNYLKRRQLENPGFLYAIEDDCGNVFWA 49

[Close]

BLAST of Carg19777 vs. TAIR10
Match: AT5G18960.1 (FAR1-related sequence 12)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 21/57 (36.84%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 64  QEPAIVFAGGLYSENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQW 121
           +E  I F      E  + I +  T  EF+S W AL+NKY + D+ WL+ +Y  R+ W
Sbjct: 495 RENLIPFPSEFKYEYEKCIYQTQTIVEFDSVWSALINKYGLRDDVWLREIYEQRENW 551

[Close]

BLAST of Carg19777 vs. TAIR10
Match: AT3G06250.1 (FAR1-related sequence 7)

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 16/44 (36.36%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 77  ENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQW 121
           E  + + ++ T  EF++ W +L+NKY + DN WL+ +Y  R++W
Sbjct: 484 EYEKCLYQSQTTVEFDTMWSSLVNKYGLRDNMWLREIYEKREKW 527

[Close]

BLAST of Carg19777 vs. Swiss-Prot
Match: sp|Q9ZVC9|FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=FRS3 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07
Identity = 54/217 (24.88%), Postives = 76/217 (35.02%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD--------------------- 60
           M+   +RT+G    ++L+Y KRMQAENP F+YAVQ D D                     
Sbjct: 185 MATNTKRTIGRDAHNLLEYFKRMQAENPGFFYAVQLDEDNQMSNVFWADSRSRVAYTHFG 244

Query: 61  -------------------------HSGWSIL-GIGM--------WIGLTKMLLQRFFQE 120
                                    H G +IL G  +        +I L K  L     +
Sbjct: 245 DTVTLDTRYRCNQFRVPFAPFTGVNHHGQAILFGCALILDESDTSFIWLFKTFLTAMRDQ 304

[Close]

BLAST of Carg19777 vs. Swiss-Prot
Match: sp|Q9SZL8|FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.1e-07
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 76  SENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQW 121
           S+ H+ +N   + E+FE CW +LL+KY + D+EWLQ +YS R+QW
Sbjct: 410 SDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQW 454

HSP 2 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHS 42
           M   RQ+++   IQ +LDYL++M A+NP F+Y+VQG  D S
Sbjct: 238 MRNNRQKSIEGEIQLLLDYLRQMNADNPNFFYSVQGSEDQS 278

[Close]

BLAST of Carg19777 vs. Swiss-Prot
Match: sp|Q9SZL7|FRS9_ARATH (Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana OX=3702 GN=FRS9 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-06
Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 82  INEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQWGYLFM 126
           + E  T  EFE+ W++++ +YY+ DN+WLQ +Y+ARQQW  +F+
Sbjct: 181 VTETETAAEFEASWDSIVRRYYMEDNDWLQSIYNARQQWVRVFI 224

HSP 2 Score: 42.0 bits (97), Expect = 5.8e-03
Identity = 15/32 (46.88%), Postives = 23/32 (71.88%), Query Frame = 0


Query: 13 IQHILDYLKRMQAENPAFYYAVQGDGDHSGWS 45
          ++H+L+YLKR Q ENP F YA++ D  +  W+
Sbjct: 18 VEHVLNYLKRRQLENPGFLYAIEDDCGNVFWA 49

[Close]

BLAST of Carg19777 vs. Swiss-Prot
Match: sp|Q3E7I5|FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 21/57 (36.84%), Postives = 31/57 (54.39%), Query Frame = 0


Query: 64  QEPAIVFAGGLYSENHRGINEAATFEEFESCWEALLNKYYIMDNEWLQLMYSARQQW 121
           +E  I F      E  + I +  T  EF+S W AL+NKY + D+ WL+ +Y  R+ W
Sbjct: 495 RENLIPFPSEFKYEYEKCIYQTQTIVEFDSVWSALINKYGLRDDVWLREIYEQRENW 551

[Close]

BLAST of Carg19777 vs. TrEMBL
Match: tr|A0A1S3BIG2|A0A1S3BIG2_CUCME (protein FAR1-RELATED SEQUENCE 9 OS=Cucumis melo OX=3656 GN=LOC103490440 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 86/223 (38.57%), Postives = 99/223 (44.39%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGD-HSGWSILGIG-------MWI 60
           MSGGRQRTL VGIQH+LDYLKRMQAENPAFYYAVQGDGD HSG +I            + 
Sbjct: 1   MSGGRQRTLVVGIQHVLDYLKRMQAENPAFYYAVQGDGDHHSGANIFWADATCRMNYTYF 60

Query: 61  GLTKMLLQRF----FQEPAIVFAG--------------GLY------------------- 120
           G T +L   F    ++ P   F+G               LY                   
Sbjct: 61  GDTVVLDTTFRTNQYRVPLAAFSGFNHHGQPVLFGCALVLYESESSFIWLFQTWLQAMSG 120

Query: 121 -----------------------------------------------------SENHRGI 126
                                                                +E  + +
Sbjct: 121 RQPISITTDPDRLIQVAVAQVLPGTRHRFCKWAIFRETQEKLSHLCQSHPTFETEFRKCV 180

[Close]

BLAST of Carg19777 vs. TrEMBL
Match: tr|A0A0A0KCS3|A0A0A0KCS3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117700 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 79/226 (34.96%), Postives = 94/226 (41.59%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQ 60
           MSGGRQRTL VG+QH+LDYLKRMQAENPAFYYAVQGDGDH   + +    W   T  +  
Sbjct: 61  MSGGRQRTLVVGVQHVLDYLKRMQAENPAFYYAVQGDGDHHAGANI---FWADATSRMNY 120

Query: 61  RFFQEPA---------------------------IVFAGGLY------------------ 120
            +F +                             ++F  GL                   
Sbjct: 121 TYFGDTVVLDTTFRTNQYRVPLAAFTGFNHHGQPVLFGCGLVLYESESSFIWLFQTWLQA 180

Query: 121 --------------------------------------------------------SENH 126
                                                                   +E  
Sbjct: 181 MSGRQPISITTDPDRLIQVAVAQVLPGTRHRFCKWAIFRETQEKLSHLCQSHPTFETEFR 240

[Close]

BLAST of Carg19777 vs. TrEMBL
Match: tr|A0A2R6RNE9|A0A2R6RNE9_ACTCH (Protein FAR1-RELATED SEQUENCE like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc07202 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-21
Identity = 58/135 (42.96%), Postives = 80/135 (59.26%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQ 60
           M+ GR RTLG G Q++LDYLKR+QAENP+F+YAVQ + DHS  +I     W   T  +  
Sbjct: 1   MNSGRHRTLGNGAQYVLDYLKRIQAENPSFFYAVQANNDHSTGNI----FWADGTCRINY 60

Query: 61  RFF-----------QEPAIVFAGGLY----SENHRGINEAATFEEFESCWEALLNKYYIM 120
            +F            +  +      Y     E ++ INE  T +EFESCW +LL ++Y++
Sbjct: 61  NYFGDTVRWSIFKETQEKLTHVYQTYPTFEMEFNKCINETETIDEFESCWLSLLERFYLL 120

[Close]

BLAST of Carg19777 vs. TrEMBL
Match: tr|A0A2P6PTJ9|A0A2P6PTJ9_ROSCH (Putative Zinc finger, SWIM-type, MULE transposase domain, FHY3/FAR1 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0281571 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-19
Identity = 74/227 (32.60%), Postives = 92/227 (40.53%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQ 60
           MSGGRQRTLG G QH+LDYLKRMQAENPAF+YAVQ D DHS  +I     W   T  +  
Sbjct: 1   MSGGRQRTLGGGGQHVLDYLKRMQAENPAFFYAVQSDSDHSSGNI----FWADATARMNY 60

Query: 61  RFFQEPAIVF-------------------------------------------------- 120
            +F++ A++F                                                  
Sbjct: 61  NYFKD-AVIFDTTYRTNHYRVPFASFIGINHHGQPVLFGCALILNESESSFIWLFQTWLQ 120

Query: 121 ---------------------------------------------AGGLY-------SEN 126
                                                         GGLY       +E 
Sbjct: 121 AMSERYPVSITTDPDRLIQVAVAQVLPHTRHRFCKSTIFREMKEKLGGLYTSHSTFETEF 180

[Close]

BLAST of Carg19777 vs. TrEMBL
Match: tr|A0A2I4H9L6|A0A2I4H9L6_9ROSI (protein FAR1-RELATED SEQUENCE 9-like OS=Juglans regia OX=51240 GN=LOC109014796 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.1e-18
Identity = 69/221 (31.22%), Postives = 84/221 (38.01%), Query Frame = 0


Query: 1   MSGGRQRTLGVGIQHILDYLKRMQAENPAFYYAVQGDGDHSGWSILGIGMWIGLTKMLLQ 60
           MSGGRQRTLG G QH+LD+LKRM AENPAF+YAVQGD DH+G +I     W   T  +  
Sbjct: 1   MSGGRQRTLGGGGQHLLDHLKRMNAENPAFFYAVQGDNDHTGGNI----FWADATSRMNY 60

Query: 61  RFFQEPAI-----------VFAGGLYSENHRG---------------------------- 120
            +F +  I           V        NH G                            
Sbjct: 61  SYFGDAVIFDTTYKMNGYRVPFSSFTGYNHHGQPVLFGCALILDESESSYIWLFQTWLHA 120

The following BLAST results are available for this feature:

BLAST of Carg19777 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947931.1	1.0e-27	82.50	uncharacterized protein LOC111451664 isoform X3 [Cucurbita moschata]	[more]
XP_022944451.1	2.7e-25	35.84	protein FAR1-RELATED SEQUENCE 9 [Cucurbita moschata] >XP_022944452.1 protein FAR...	[more]
XP_023513010.1	2.7e-25	35.84	protein FAR1-RELATED SEQUENCE 9-like [Cucurbita pepo subsp. pepo] >XP_023513011....	[more]
XP_008448156.1	1.8e-24	38.57	PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Cucumis melo]	[more]
XP_022985850.1	1.8e-24	35.14	protein FAR1-RELATED SEQUENCE 9-like [Cucurbita maxima] >XP_022985851.1 protein ...	[more]

BLAST of Carg19777 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27110.1	1.3e-08	24.88	FAR1-related sequence 3	[more]
AT4G38180.1	2.8e-08	48.89	FAR1-related sequence 5	[more]
AT4G38170.1	1.1e-07	45.45	FAR1-related sequence 9	[more]
AT5G18960.1	1.7e-05	36.84	FAR1-related sequence 12	[more]
AT3G06250.1	1.9e-04	36.36	FAR1-related sequence 7	[more]

BLAST of Carg19777 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZVC9\|FRS3_ARATH	2.3e-07	24.88	Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana OX=3702 GN=FRS3 PE=1 SV=...	[more]
sp\|Q9SZL8\|FRS5_ARATH	5.1e-07	48.89	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=...	[more]
sp\|Q9SZL7\|FRS9_ARATH	1.9e-06	45.45	Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana OX=3702 GN=FRS9 PE=2 SV=...	[more]
sp\|Q3E7I5\|FRS12_ARATH	3.1e-04	36.84	Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 S...	[more]

BLAST of Carg19777 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BIG2\|A0A1S3BIG2_CUCME	1.2e-24	38.57	protein FAR1-RELATED SEQUENCE 9 OS=Cucumis melo OX=3656 GN=LOC103490440 PE=4 SV=...	[more]
tr\|A0A0A0KCS3\|A0A0A0KCS3_CUCSA	1.3e-23	34.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G117700 PE=4 SV=1	[more]
tr\|A0A2R6RNE9\|A0A2R6RNE9_ACTCH	1.2e-21	42.96	Protein FAR1-RELATED SEQUENCE like OS=Actinidia chinensis var. chinensis OX=1590...	[more]
tr\|A0A2P6PTJ9\|A0A2P6PTJ9_ROSCH	2.5e-19	32.60	Putative Zinc finger, SWIM-type, MULE transposase domain, FHY3/FAR1 family OS=Ro...	[more]
tr\|A0A2I4H9L6\|A0A2I4H9L6_9ROSI	2.1e-18	31.22	protein FAR1-RELATED SEQUENCE 9-like OS=Juglans regia OX=51240 GN=LOC109014796 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR031052	FHY3/FAR1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19777-RA	Carg19777-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31669:SF18	SUBFAMILY NOT NAMED	coord: 3..39
None	No IPR available	PANTHER	PTHR31669:SF18	SUBFAMILY NOT NAMED	coord: 75..121
IPR031052	FHY3/FAR1 family	PANTHER	PTHR31669	FAMILY NOT NAMED	coord: 75..121 coord: 3..39

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19777	Cla97C02G036590	Watermelon (97103) v2	carwmbB0891
Carg19777	Bhi05G001330	Wax gourd	carwgoB0995
Carg19777	BhiUN189G29	Wax gourd	carwgoB0996

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19777	Carg04119	Silver-seed gourd	carcarB237
Carg19777	Carg16127	Silver-seed gourd	carcarB376
Carg19777	Carg18097	Silver-seed gourd	carcarB631

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19777	Cucumber (Gy14) v2	carcgybB0845
Carg19777	Cucumber (Gy14) v2	carcgybB0846
Carg19777	Cucumber (Gy14) v1	carcgyB0973
Carg19777	Cucumber (Gy14) v1	carcgyB0974
Carg19777	Cucurbita maxima (Rimu)	carcmaB1181
Carg19777	Cucurbita maxima (Rimu)	carcmaB1183
Carg19777	Cucurbita maxima (Rimu)	carcmaB1186
Carg19777	Cucurbita maxima (Rimu)	carcmaB1187
Carg19777	Cucurbita moschata (Rifu)	carcmoB1150
Carg19777	Cucurbita moschata (Rifu)	carcmoB1152
Carg19777	Cucurbita moschata (Rifu)	carcmoB1155
Carg19777	Cucurbita moschata (Rifu)	carcmoB1156
Carg19777	Cucurbita pepo (Zucchini)	carcpeB1190
Carg19777	Cucurbita pepo (Zucchini)	carcpeB1189
Carg19777	Cucurbita pepo (Zucchini)	carcpeB1193
Carg19777	Cucurbita pepo (Zucchini)	carcpeB1194
Carg19777	Wild cucumber (PI 183967)	carcpiB0891
Carg19777	Wild cucumber (PI 183967)	carcpiB0892
Carg19777	Cucumber (Chinese Long) v2	carcuB0871
Carg19777	Cucumber (Chinese Long) v2	carcuB0872
Carg19777	Cucumber (Chinese Long) v3	carcucB0896
Carg19777	Bottle gourd (USVL1VR-Ls)	carlsiB776
Carg19777	Bottle gourd (USVL1VR-Ls)	carlsiB779
Carg19777	Melon (DHL92) v3.5.1	carmeB0843
Carg19777	Melon (DHL92) v3.6.1	carmedB0854
Carg19777	Watermelon (Charleston Gray)	carwcgB0827
Carg19777	Watermelon (Charleston Gray)	carwcgB0828
Carg19777	Watermelon (97103) v1	carwmB0854
Carg19777	Watermelon (97103) v2	carwmbB0890
Carg19777	Watermelon (97103) v2	carwmbB0892
Carg19777	Wax gourd	carwgoB0998