Carg19757 (gene) Silver-seed gourd

Overview
NameCarg19757
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_143 : 142312 .. 142653 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGACTTCTCTCGTTACGAAATTGCTTGAAGGTGCAACTAATTACATCTCTTGGAGCAAGGAAAGGTTGATCGCTCTAAGCCAGATGAAAACCAAGATAGTCTTTTCTTGCAGTATGACGATGTAACAATGATATTGTCACATCTTGGATCATCAATTCCATCTCCAAGCATATTGCAGTCAGTCTTGTTTACAATGGATGTGCAAAGGATGCATGGAATAAACTAAAGGAGCGTTGTCGCCAAACAAATGGACCACGGATATCCCAGCTCTGCAAACAACTGGAAACCACAGTTCAAGGAACTATGTCAGTGGACATTCCTGGCAACCTGAATTAG

mRNA sequence

ATGGACGGACTTCTCTCGTTACGAAATTGCTTGAAGGTGCAACTAATTACATCTCTTGGAGCAAGGAAAGTCAGTCTTGTTTACAATGGATGTGCAAAGGATGCATGGAATAAACTAAAGGAGCGTTGTCGCCAAACAAATGGACCACGGATATCCCAGCTCTGCAAACAACTGGAAACCACAGTTCAAGGAACTATGTCAGTGGACATTCCTGGCAACCTGAATTAG

Coding sequence (CDS)

ATGGACGGACTTCTCTCGTTACGAAATTGCTTGAAGGTGCAACTAATTACATCTCTTGGAGCAAGGAAAGTCAGTCTTGTTTACAATGGATGTGCAAAGGATGCATGGAATAAACTAAAGGAGCGTTGTCGCCAAACAAATGGACCACGGATATCCCAGCTCTGCAAACAACTGGAAACCACAGTTCAAGGAACTATGTCAGTGGACATTCCTGGCAACCTGAATTAG

Protein sequence

MDGLLSLRNCLKVQLITSLGARKVSLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDIPGNLN
Homology
[Close]
BLAST of Carg19757 vs. NCBI nr
Match: XP_011659734.1 (PREDICTED: uncharacterized protein LOC105436248 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 25  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVDI 71
           SLVYNG  K+ W++LKER +Q+NGP I QL K L TT QG++SV+I
Sbjct: 111 SLVYNGNVKEMWDELKERYKQSNGPHIYQLQKDLVTTTQGSLSVEI 156

[Close]
BLAST of Carg19757 vs. NCBI nr
Match: XP_022145891.1 (uncharacterized protein LOC111015239 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 6.4e-06
Identity = 25/45 (55.56%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 25  SLVYNGCAKDAWNKLKERCRQTNGPRISQLCKQLETTVQGTMSVD 70
           S++Y G AKD W++LKER +Q++ PRI QL K+L TT+QGT+S++
Sbjct: 108 SIIYTGSAKDIWDELKERFQQSDAPRIFQLRKELVTTIQGTLSIE 152

The following BLAST results are available for this feature:
BLAST of Carg19757 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011659734.13.8e-0660.87PREDICTED: uncharacterized protein LOC105436248 [Cucumis sativus][more]
XP_022145891.16.4e-0655.56uncharacterized protein LOC111015239 [Momordica charantia][more]
BLAST of Carg19757 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg19757 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg19757 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19757-RACarg19757-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg19757Silver-seed gourdcarcarB237
Carg19757Silver-seed gourdcarcarB376
Carg19757Cucumber (Gy14) v2carcgybB0844
Carg19757Cucumber (Gy14) v2carcgybB0846
Carg19757Cucumber (Gy14) v1carcgyB0973
Carg19757Cucumber (Gy14) v1carcgyB0975
Carg19757Cucurbita maxima (Rimu)carcmaB1181
Carg19757Cucurbita maxima (Rimu)carcmaB1183
Carg19757Cucurbita maxima (Rimu)carcmaB1186
Carg19757Cucurbita maxima (Rimu)carcmaB1187
Carg19757Cucurbita moschata (Rifu)carcmoB1150
Carg19757Cucurbita moschata (Rifu)carcmoB1152
Carg19757Cucurbita moschata (Rifu)carcmoB1155
Carg19757Cucurbita moschata (Rifu)carcmoB1156
Carg19757Cucurbita pepo (Zucchini)carcpeB1190
Carg19757Cucurbita pepo (Zucchini)carcpeB1189
Carg19757Cucurbita pepo (Zucchini)carcpeB1193
Carg19757Cucurbita pepo (Zucchini)carcpeB1194
Carg19757Wild cucumber (PI 183967)carcpiB0890
Carg19757Cucumber (Chinese Long) v2carcuB0870
Carg19757Cucumber (Chinese Long) v2carcuB0872
Carg19757Cucumber (Chinese Long) v3carcucB0895
Carg19757Bottle gourd (USVL1VR-Ls)carlsiB779
Carg19757Melon (DHL92) v3.5.1carmeB0844
Carg19757Melon (DHL92) v3.6.1carmedB0855
Carg19757Watermelon (Charleston Gray)carwcgB0827
Carg19757Watermelon (Charleston Gray)carwcgB0828
Carg19757Watermelon (97103) v1carwmB0854
Carg19757Watermelon (97103) v1carwmB0855
Carg19757Watermelon (97103) v2carwmbB0891
Carg19757Watermelon (97103) v2carwmbB0892
Carg19757Wax gourdcarwgoB0995
Carg19757Wax gourdcarwgoB0998