Carg19752 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19752
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Alanine--tRNA ligase
Location	Cucurbita_argyrosperma_scaffold_143 : 111132 .. 111452 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATACCGATGCCGATTCACTAAAAGGTGCAGCCGAGTTCCTGATGGACAATCTTCAAGATCCCGCAGCTATCGTACTAGGCTCCTGTCCAGGCGAAGGAAAAGTGAGTTTAGTAGCAGCATTTACGCCAACTGTTGTTGATCTGGGAGTGCAGGCAAGGAATTTCATAGGACCTATAGCTAAGTTGTGTGGTGGAGGAGGGGGTGGGAGGCCCAATTTTGCTCAGGCAGGTGGAAGAAAACCTGAGAACTTGTTGAACGCCCTCGAAAACGCTCGATCAGAGCTCGTTCGAATCTTATCTGAGAAGGCAAGCTAG

mRNA sequence

ATGGATGATACCGATGCCGATTCACTAAAAGGTGCAGCCGAGTTCCTGATGGACAATCTTCAAGATCCCGCAGCTATCGTACTAGGCTCCTGTCCAGGCGAAGGAAAAGTGAGTTTAGTAGCAGCATTTACGCCAACTGTTGTTGATCTGGGAGTGCAGGCAAGGAATTTCATAGGACCTATAGCTAAGTTGTGTGGTGGAGGAGGGGGTGGGAGGCCCAATTTTGCTCAGGCAGGTGGAAGAAAACCTGAGAACTTGTTGAACGCCCTCGAAAACGCTCGATCAGAGCTCGTTCGAATCTTATCTGAGAAGGCAAGCTAG

Coding sequence (CDS)

ATGGATGATACCGATGCCGATTCACTAAAAGGTGCAGCCGAGTTCCTGATGGACAATCTTCAAGATCCCGCAGCTATCGTACTAGGCTCCTGTCCAGGCGAAGGAAAAGTGAGTTTAGTAGCAGCATTTACGCCAACTGTTGTTGATCTGGGAGTGCAGGCAAGGAATTTCATAGGACCTATAGCTAAGTTGTGTGGTGGAGGAGGGGGTGGGAGGCCCAATTTTGCTCAGGCAGGTGGAAGAAAACCTGAGAACTTGTTGAACGCCCTCGAAAACGCTCGATCAGAGCTCGTTCGAATCTTATCTGAGAAGGCAAGCTAG

Protein sequence

MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS

Homology

[Close]

BLAST of Carg19752 vs. NCBI nr
Match: XP_023533448.1 (alanine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 3.5e-50
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP
Sbjct: 894 MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 953

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
           IAKLCGGGGGGRPNFAQAGGRKPENLLNALENAR+ELVRILSEKAS
Sbjct: 954 IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARTELVRILSEKAS 999

[Close]

BLAST of Carg19752 vs. NCBI nr
Match: XP_023533450.1 (alanine--tRNA ligase, chloroplastic/mitochondrial isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 3.5e-50
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP
Sbjct: 834 MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 893

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
           IAKLCGGGGGGRPNFAQAGGRKPENLLNALENAR+ELVRILSEKAS
Sbjct: 894 IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARTELVRILSEKAS 939

[Close]

BLAST of Carg19752 vs. NCBI nr
Match: XP_023533449.1 (alanine--tRNA ligase, chloroplastic/mitochondrial isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 3.5e-50
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP
Sbjct: 888 MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 947

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
           IAKLCGGGGGGRPNFAQAGGRKPENLLNALENAR+ELVRILSEKAS
Sbjct: 948 IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARTELVRILSEKAS 993

[Close]

BLAST of Carg19752 vs. NCBI nr
Match: XP_022947694.1 (alanine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 206.5 bits (524), Expect = 4.6e-50
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTP+VVDLGVQARNFIGP
Sbjct: 894 MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPSVVDLGVQARNFIGP 953

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
           IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS
Sbjct: 954 IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 999

[Close]

BLAST of Carg19752 vs. NCBI nr
Match: XP_022947695.1 (alanine--tRNA ligase, chloroplastic/mitochondrial isoform X2 [Cucurbita moschata])

HSP 1 Score: 206.5 bits (524), Expect = 4.6e-50
Identity = 105/106 (99.06%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTP+VVDLGVQARNFIGP
Sbjct: 888 MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPSVVDLGVQARNFIGP 947

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
           IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS
Sbjct: 948 IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 993

[Close]

BLAST of Carg19752 vs. TAIR10
Match: AT5G22800.1 (Alanyl-tRNA synthetase, class IIc)

HSP 1 Score: 152.9 bits (385), Expect = 1.1e-37
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           MDDTDADSLK AAE L+  L+DP A+VLGS P + KVSLVAAF+P VV LGVQA  FIGP
Sbjct: 873 MDDTDADSLKSAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGP 932

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEK 105
           IAKLCGGGGGG+PNFAQAGGRKPENL +ALE AR +LV  LSEK
Sbjct: 933 IAKLCGGGGGGKPNFAQAGGRKPENLPSALEKAREDLVATLSEK 976

[Close]

BLAST of Carg19752 vs. Swiss-Prot
Match: sp|B9HQZ6|SYAP_POPTR (Alanine--tRNA ligase, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_821063 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.4e-43
Identity = 86/106 (81.13%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           MDD DAD+LK AAE+LMD LQDPAAI+LGSCP EGKVSLVAAFTP VVD+G+QA  FIGP
Sbjct: 889 MDDFDADALKSAAEYLMDTLQDPAAIILGSCPDEGKVSLVAAFTPGVVDIGIQAGKFIGP 948

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
           IAKLCGGGGGGRPNFAQAGGRKPENL NALE AR++L+ IL+EKA+
Sbjct: 949 IAKLCGGGGGGRPNFAQAGGRKPENLTNALEKARTDLILILTEKAN 994

[Close]

BLAST of Carg19752 vs. Swiss-Prot
Match: sp|Q9FFC7|SYAP_ARATH (Alanine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=EMB86 PE=1 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 2.0e-36
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           MDDTDADSLK AAE L+  L+DP A+VLGS P + KVSLVAAF+P VV LGVQA  FIGP
Sbjct: 873 MDDTDADSLKSAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGP 932

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEK 105
           IAKLCGGGGGG+PNFAQAGGRKPENL +ALE AR +LV  LSEK
Sbjct: 933 IAKLCGGGGGGKPNFAQAGGRKPENLPSALEKAREDLVATLSEK 976

[Close]

BLAST of Carg19752 vs. Swiss-Prot
Match: sp|B8B4H5|SYAP_ORYSI (Alanine--tRNA ligase, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=OsI_22356 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 9.8e-36
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 3   DTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIA 62
           D DAD LK AAE+L+D L+DPAA++LGS PG+GKVSLVAAF+P VV +G+QA  F+G IA
Sbjct: 893 DVDADGLKSAAEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGVVKMGIQAGKFVGGIA 952

Query: 63  KLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
           KLCGGGGGG+PNFAQAGGRKPENL  ALE AR E+V  +S K+S
Sbjct: 953 KLCGGGGGGKPNFAQAGGRKPENLPGALEKARDEIVAAISSKSS 996

[Close]

BLAST of Carg19752 vs. Swiss-Prot
Match: sp|B9FSH5|SYAP_ORYSJ (Alanine--tRNA ligase, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0245800 PE=3 SV=2)

HSP 1 Score: 150.6 bits (379), Expect = 9.8e-36
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 3   DTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGPIA 62
           D DAD LK AAE+L+D L+DPAA++LGS PG+GKVSLVAAF+P VV +G+QA  F+G IA
Sbjct: 893 DVDADGLKSAAEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGVVKMGIQAGKFVGGIA 952

Query: 63  KLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
           KLCGGGGGG+PNFAQAGGRKPENL  ALE AR E+V  +S K+S
Sbjct: 953 KLCGGGGGGKPNFAQAGGRKPENLPGALEKARDEIVAAISSKSS 996

[Close]

BLAST of Carg19752 vs. Swiss-Prot
Match: sp|C5Z7K4|SYAP_SORBI (Alanine--tRNA ligase, chloroplastic/mitochondrial OS=Sorghum bicolor OX=4558 GN=Sb10g008780 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.4e-34
Identity = 72/105 (68.57%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           M D DAD LK AAE+L+  LQDPAA++LGS PG+GKVSLVAAF+P VV +G+QA  F+G 
Sbjct: 857 MGDVDADGLKSAAEYLIGTLQDPAAVILGSSPGDGKVSLVAAFSPAVVKMGLQAGKFVGG 916

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKA 106
           IAKLCGGGGGG+PNFAQAGGRKPENL +ALE AR+E+V  +S  +
Sbjct: 917 IAKLCGGGGGGKPNFAQAGGRKPENLPDALEKARAEIVAGVSSSS 961

[Close]

BLAST of Carg19752 vs. TrEMBL
Match: tr|A0A1S3BK22|A0A1S3BK22_CUCME (Probable alanine--tRNA ligase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490555 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.3e-45
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           MDDTDADSLK AAEFL+DNLQDPAAIVLGSCPGEGKVSLVAAFTP+VVDLGVQA  FIG 
Sbjct: 894 MDDTDADSLKSAAEFLIDNLQDPAAIVLGSCPGEGKVSLVAAFTPSVVDLGVQAGKFIGS 953

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
           IAKLCGGGGGGRPNFAQAGGRKPENLL+ALENARSEL RILSEKAS
Sbjct: 954 IAKLCGGGGGGRPNFAQAGGRKPENLLDALENARSELTRILSEKAS 999

[Close]

BLAST of Carg19752 vs. TrEMBL
Match: tr|A0A0A0KE77|A0A0A0KE77_CUCSA (Alanine--tRNA ligase OS=Cucumis sativus OX=3659 GN=Csa_6G127290 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.0e-45
Identity = 97/106 (91.51%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           MDD DADSLK AAEFLMDNLQDP AIVLGSCPGEGKVSLVAAFTP+VVDLGVQA  FIG 
Sbjct: 790 MDDADADSLKSAAEFLMDNLQDPVAIVLGSCPGEGKVSLVAAFTPSVVDLGVQAGKFIGS 849

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
           IAKLCGGGGGGRPNFAQAGGRKPENLL+ALENARSEL RILSEKAS
Sbjct: 850 IAKLCGGGGGGRPNFAQAGGRKPENLLDALENARSELTRILSEKAS 895

[Close]

BLAST of Carg19752 vs. TrEMBL
Match: tr|A0A2N9I8K7|A0A2N9I8K7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48262 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-42
Identity = 92/106 (86.79%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
           MDDTDADSLK AAE+L+D LQDPAA+VLGSCPGEGKVSLVAAFTP VVDLGVQA  FIGP
Sbjct: 1   MDDTDADSLKSAAEYLVDALQDPAAVVLGSCPGEGKVSLVAAFTPGVVDLGVQAGKFIGP 60

Query: 61  IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
           IAKLCGGGGGGRPNFAQAGGRKPENL +ALE A+SELV IL+EKAS
Sbjct: 61  IAKLCGGGGGGRPNFAQAGGRKPENLSSALEKAQSELVSILTEKAS 106

[Close]

BLAST of Carg19752 vs. TrEMBL
Match: tr|A0A2P5CKE3|A0A2P5CKE3_9ROSA (Probable alanine--tRNA ligase, chloroplastic OS=Trema orientalis OX=63057 GN=TorRG33x02_281590 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.8e-42
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1    MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
            MDDTDADSLK AAE+L+  LQDPAA+VLGS PGEGKVSLVAAFTP V+DLG+QA  FIGP
Sbjct: 899  MDDTDADSLKSAAEYLIATLQDPAAVVLGSSPGEGKVSLVAAFTPGVLDLGIQAGKFIGP 958

Query: 61   IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
            IAKLCGGGGGGRPNFAQAGGRKPENLLNALE ARSEL+ +LSEKAS
Sbjct: 959  IAKLCGGGGGGRPNFAQAGGRKPENLLNALEKARSELISVLSEKAS 1004

[Close]

BLAST of Carg19752 vs. TrEMBL
Match: tr|A0A2P4KQE7|A0A2P4KQE7_QUESU (Alanine--tRNA ligase OS=Quercus suber OX=58331 GN=CFP56_46992 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-41
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1    MDDTDADSLKGAAEFLMDNLQDPAAIVLGSCPGEGKVSLVAAFTPTVVDLGVQARNFIGP 60
            MDDTDADSL+ AAE+L+D LQDPAA+VLGSCPGEGKVSLVAAFTP VVDLG+QA  FIGP
Sbjct: 1539 MDDTDADSLRSAAEYLVDALQDPAAVVLGSCPGEGKVSLVAAFTPGVVDLGIQAGKFIGP 1598

Query: 61   IAKLCGGGGGGRPNFAQAGGRKPENLLNALENARSELVRILSEKAS 107
            IAKLC GGGGGRPNFAQAGGRKPENL +ALE ARSELV IL+EKAS
Sbjct: 1599 IAKLCSGGGGGRPNFAQAGGRKPENLSSALEKARSELVTILTEKAS 1644

The following BLAST results are available for this feature:

BLAST of Carg19752 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533448.1	3.5e-50	99.06	alanine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [Cucurbita pepo sub...	[more]
XP_023533450.1	3.5e-50	99.06	alanine--tRNA ligase, chloroplastic/mitochondrial isoform X3 [Cucurbita pepo sub...	[more]
XP_023533449.1	3.5e-50	99.06	alanine--tRNA ligase, chloroplastic/mitochondrial isoform X2 [Cucurbita pepo sub...	[more]
XP_022947694.1	4.6e-50	99.06	alanine--tRNA ligase, chloroplastic/mitochondrial isoform X1 [Cucurbita moschata...	[more]
XP_022947695.1	4.6e-50	99.06	alanine--tRNA ligase, chloroplastic/mitochondrial isoform X2 [Cucurbita moschata...	[more]

BLAST of Carg19752 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22800.1	1.1e-37	75.96	Alanyl-tRNA synthetase, class IIc	[more]

BLAST of Carg19752 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B9HQZ6\|SYAP_POPTR	6.4e-43	81.13	Alanine--tRNA ligase, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694...	[more]
sp\|Q9FFC7\|SYAP_ARATH	2.0e-36	75.96	Alanine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
sp\|B8B4H5\|SYAP_ORYSI	9.8e-36	70.19	Alanine--tRNA ligase, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica ...	[more]
sp\|B9FSH5\|SYAP_ORYSJ	9.8e-36	70.19	Alanine--tRNA ligase, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonic...	[more]
sp\|C5Z7K4\|SYAP_SORBI	2.4e-34	68.57	Alanine--tRNA ligase, chloroplastic/mitochondrial OS=Sorghum bicolor OX=4558 GN=...	[more]

BLAST of Carg19752 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BK22\|A0A1S3BK22_CUCME	1.3e-45	92.45	Probable alanine--tRNA ligase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A0A0KE77\|A0A0A0KE77_CUCSA	5.0e-45	91.51	Alanine--tRNA ligase OS=Cucumis sativus OX=3659 GN=Csa_6G127290 PE=3 SV=1	[more]
tr\|A0A2N9I8K7\|A0A2N9I8K7_FAGSY	2.3e-42	86.79	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48262 PE=4 SV=1	[more]
tr\|A0A2P5CKE3\|A0A2P5CKE3_9ROSA	6.8e-42	84.91	Probable alanine--tRNA ligase, chloroplastic OS=Trema orientalis OX=63057 GN=Tor...	[more]
tr\|A0A2P4KQE7\|A0A2P4KQE7_QUESU	1.2e-41	84.91	Alanine--tRNA ligase OS=Quercus suber OX=58331 GN=CFP56_46992 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR003156	DHHA1_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19752-RA	Carg19752-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.310.40		coord: 1..98 e-value: 2.8E-23 score: 83.9
None	No IPR available	PANTHER	PTHR11777	ALANYL-TRNA SYNTHETASE	coord: 1..105
None	No IPR available	PANTHER	PTHR11777:SF14	ALANINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL	coord: 1..105
IPR003156	DHHA1 domain	PFAM	PF02272	DHHA1	coord: 2..95 e-value: 1.2E-14 score: 54.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19752	Csa6G127290	Cucumber (Chinese Long) v2	carcuB0870
Carg19752	CmaCh02G002810	Cucurbita maxima (Rimu)	carcmaB1187

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19752	Silver-seed gourd	carcarB376
Carg19752	Cucumber (Gy14) v2	carcgybB0844
Carg19752	Cucumber (Gy14) v2	carcgybB0846
Carg19752	Cucumber (Gy14) v1	carcgyB0975
Carg19752	Cucurbita maxima (Rimu)	carcmaB1186
Carg19752	Cucurbita moschata (Rifu)	carcmoB1152
Carg19752	Cucurbita moschata (Rifu)	carcmoB1155
Carg19752	Cucurbita moschata (Rifu)	carcmoB1156
Carg19752	Cucurbita pepo (Zucchini)	carcpeB1190
Carg19752	Cucurbita pepo (Zucchini)	carcpeB1189
Carg19752	Cucurbita pepo (Zucchini)	carcpeB1194
Carg19752	Wild cucumber (PI 183967)	carcpiB0890
Carg19752	Cucumber (Chinese Long) v3	carcucB0895
Carg19752	Melon (DHL92) v3.5.1	carmeB0844
Carg19752	Melon (DHL92) v3.6.1	carmedB0855
Carg19752	Watermelon (Charleston Gray)	carwcgB0827
Carg19752	Watermelon (97103) v1	carwmB0855
Carg19752	Watermelon (97103) v2	carwmbB0891
Carg19752	Watermelon (97103) v2	carwmbB0892
Carg19752	Wax gourd	carwgoB0995
Carg19752	Wax gourd	carwgoB0998