Carg19728 (gene) Silver-seed gourd

Overview
NameCarg19728
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionMADS-box protein like
LocationCucurbita_argyrosperma_scaffold_133 : 366170 .. 370706 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTTTACCTCTTTTAGGTACATCACCCATTAACAAATTTGCTCATAAACCATTCCATTCCCTTTCATCTGTCCCAAAAAGGAAACCCTTTTTCCCCTTTTTCTCTCTCCAAAAATCCATGGCACCTGTTCATCAAGCTTCATAATTTGCAGCTTCACCACCAAATCTGTAAGAAATTCACCTCTTTTTTTGCTCTCAATCTCTGTTTTCGTGTTCTTAATTGACCCGATCGTTGTTCTAACGATTAGGGTTTGTTTATTTTCATAGATCGAGCAAATTTATACGGTTTATATGTTCGTAAAGTCATCGTTTTTCATGCAAATTACAGAAAATTTGGATCTGGGTCGAGTTGGGTCGAGTTGAATTATGACGAGACAAAAAATTCAGATTAAAAAAATCGATAATATAGCAGCTAGGCAAGTGACGTTTTCAAAGAGGAGAAGAGGGCTGTTCAAGAAAGCTCATGAACTTGCTACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGATTATTCTAGCTCAAGGTAATTTTCTCTCTCTCTCTCTCTAAAAATTTACTGTTTTTTTTGTTTATTTTAATGAATTTCTTCTTGATTTTGGCTTGGATTTAGGGATTATTGAATTAAATTAATAAGGAATTTGATATAAAAATTGGGTTTTTAGGCCTTTTTTTGTTGAAATTATGTGTGTTTTTGTCTAAAAAAACATGTTTTTTTAGTTAAAGATGTGATTTTTATGGTTTGAATTATTGTGAAGAACATTTATTTATTAGTAAAATGAATTTAATTACATTTTTTTTCACTATAATTCTTTATTTTTTTTTATTTTATTAAGGAAATGATGTTTAAATTCATATTGTTTTTATAATTTATGTGGGAAAAAATGGTATTTTGAAATGACCTGCAGACACATGACATCATAAGTGACATGTTAATGTCTTAAATTTTGTTCCAAAAAAACATGAAAATTGTTTGCAACTTGTCCAAGAATCTCTCTCTCTCATAATGTTTGGTTTTCTCTCCCTCTAATTATGGGGTTTGTCTGTACTAATTTGTAAATATCAAAAGTTTCTATGTAAAGAAAAAAAAAATTATCTTTTGAAATTGTACGAAAAATTATTTATGTAACCAAAACTGTATGGGTTCAAGCTCACTGTTAGTAGATATTGTCTATTTTAGTCCGTTACGTATCGTTATCAGTCTCTCATTTTTAAAACGAGTCTACTAAGAAGAGGTTGTCACACCCTTATATGTAATGTTTTATTTTACTCTCCAACTAATGTGGATCTCAGATGTCATGAATAACCTTAATTCTTACACAGTCGTTGTCATATCATTTTCCGTCTTATTTAATCGAATTCTCGAAAAAAAGATTCAAAGTTCAAAGGAAAAAATGAAAATATTTTTAGCGCGTTTACAAAGGTAACCGGTTAGGTGGACTTTGACTTTTTAAACGCTACGTTGGACCGAGTGAAGAATGAAAAACGTCCGCTAACGCCTTTTAAAAGGGATAAAATCTTTTTTAGATCAGCAGAAATCTCTCTCTAACATACGCATTTTAAAACAGTGAGGCCGAGGGCCAAAGTGAAAATATCTACCAGTAGTGGCTTTTAAGCTGTTACAAATTTGAACTCCGACCTTAGAAAAGGAGTTATGTATCAATTATCATTGAATTATATTATATAGCTTTATCATATTCTCGAAAAATGTTTTTTATTGCATGAAGCATGCACGAGTTACTTGGAAGACATAATAAGCTACCGGAGGTGAATAACTTTTGCCAGCCTCTATTTCAGGTGAGTTCGAATTCGAAACTCCGACCTTTTGATCGATGATATATATATAGTCATACCCATATGCTTAGGTTGGCACCGTAAGACGGTTGTTGCTTCGGTTAATCGTTTTTAGGGTTTATCTAGCAGATGGAAAAGAGTGTGTGTGCTAATTTGAGAGAGGAATTTGCAGCCAAAACCAAAGAACTTAGGTAACATTACTAAAATCTTTGTAAATTATAAGGAAAAAAGAGTCTGATTTTGTGTTAAAACTATGAACAAGGCATATGAAGGGAGAAGAACTTGAAGAACTTGGAATAGAAGAATTAAAGCAGCTCGAGAAATTGCTCGAGATTGGTTTGAATCGTGTCATAGAGACAAAGGTTCGTAATTCTTAACAAGTTTTATTCCGTAAATAAGCTTATGATCATCAAATTATGTTATAATTCGGAGATTTCGTGTGTTGTTCTTGTAGGATGAAAAGTTTCTAAAAGAGATCGAGGCTGTCAAGGAGAAGGTCGATAATCGATTTTTGAAAATTAAGCTTATAATCACTACTTCTACGTAACACAACAGCTTCCTAACTTTGTTATCTACTTTTTACGAATATAGTTCGAATTTGGCTAAGAATTCAAGTGCTTACATGATTTTCAAGAACAAAATGGATTATCGAAAAGGGTCTTAAATATTCTCGAGCACGAACGATAAAAATGCGAACCCGCTTCATATAATACATGAATATTGATTGCAGGAAGCTTTGCTGATGAAAGAGAATCAGAGATTGAGGAATCAAGTGAGAGCTTTGAATAGAGATGAGCAAGAACAGCAAGCAGTGGGTGTTGGTGGGAGCTCCTTGGGCTCAAAGTCAATCACTAGCAATAGCAGCTCCTCACCAAACCCTAGTTCCCAAGATTGTGATGATATTTCTCTCAAATTGGGGTTAGTAGTTTTCTTACATGCACTATATAAAAGGCCTTTTGAGTCCCGTTTTTTTTCGGAGATTAAAAGACGATAGATGAAAGTTAAGGGTCGATTTGAAATGATTGTTTAAGTGTTCGAGAATGGGGTTAGCGTTAAGAAAGAGATTTTTAGCTCATGGAAATAAGACGTTTTAAATAAGCCCTGAGATAGGTTCATTGGTATGACTCGGTTGAACATTTCTTTAGAAATGGTGACTTAAAGATCTCTTTAGAGTGAAGACTATCTTTATAGACCAACATGGGTCATTCTAGTTTGTTTTGTCGTCATTCATGTGCTTTTTAGACCGACATGGGTCATTTTAGTAGTTTTGTCATCCTTCACATGCTTTTTAGATCAACATGGGTCATTTTAGTATGTTTTGTCGTCATTCACATGCTTTTTAGACCAATATGGGTCATTTTAGTATGTTTTTTCGTCATTCACGTGCTTTTTAGACCAAAATGGGTCACTTTAGTAGTTTTGTCATCATTCACATGCTTTTTAGACCAACATAGGTCATTTTAGTATGTTTTGTCGTCATTCACATGCTTTTTAGACCAACATGGGTCATTTTAGTATGTTTTTTCGTCATTCACATGGGTCACTTTAGTAGTTTTGTCATCATTCACATGAGACCAACATAGGTCATTTTAGTATGTTTTGTCGTCATTCACATGCTTTTTAGACCAACATGAGTCATTTTAGTATGTTTTGTCCTCATTCACATGTTTTTTTAGACCGACCCAGGTCATTTTAGTTCACATACTTTTTAGACCAACATGGGTCATTTTAGTATGTTTTGTCCTCATTCACATGTTTTTTAGACCGACACAGGTCATTTTAGTATATTTTGTTCTCATTCACATGATTTTTAGACCAACACGCATCATTTTAGTATAGAAAAATTCATAGGATGTCACTCAACATAAAATTGCTCCAGTCAAAGCAAGTTTAATTTTAGAATTCTTATGGTTGAGCCATCAAAAAAAAAAAAAAAGGAGGAAGATACACCTTCTTGGTAAAGACAATAAATTTCAATTTTTTATGTCTGTTTTAGCCATCACATCCTCAAGATCGCTCTCATTTGAATATGATCTTGATTCATTCATGTACCTGCTTTTTACCCCGTGGGATATTTAAGAAATAACTAAACCAAATAATAGTCAAAATGTTCTAGAAAGGTAGCTAAACAACTTTCAAAAGCACTATAACCATTCAAACAAAGTTATAACTGAGTTTCTTGCAGAGAAAAAGGATCTCTGTGTACAAAGAGATGACAATTAATATATGTTTGCCTCTATATGCAGTCTTTGAAGGCTCAAAGTATGCGATTCTCTGCAGCAGCTTGGCAATGCAAGCTCAGCCTTCTCTAATGGAGCTTTTACTAATCACTGGACTGCCAAAGCCACTCCTATTTGCATACAGACAATAAGGATGTGAAAAGGCCAATTCATTCAATATCATATCATGTTTTCAAAGCAGAAATGAGTTACATACATGAATATTGTTTCTGCATACCAATTGATTAAGAGTTGATGAAACTTTCAAAGGGAGTTTTATAAGGAAAATGACACTTCTCAGACAAAGTAAACGAACCTGCGTGCCTGCTGATCTTGAAGCACATACATCATAAATATATTGTAAAGCCCCTAGTCTACAGCTAGCCGATATTGTCATCTTTGGATTTTTCCTTCTGAGTTTTTTCTCAAGGTTTTAAAACATGTCTATTAGGGAGAGGTTTCCGTACCTTTATAAATAATACTTTGTTCCCCTCTCTAACC

mRNA sequence

TTCCTTTACCTCTTTTAGGTACATCACCCATTAACAAATTTGCTCATAAACCATTCCATTCCCTTTCATCTGTCCCAAAAAGGAAACCCTTTTTCCCCTTTTTCTCTCTCCAAAAATCCATGGCACCTGTTCATCAAGCTTCATAATTTGCAGCTTCACCACCAAATCTATCGAGCAAATTTATACGGTTTATATGTTCGTAAAGTCATCGTTTTTCATGCAAATTACAGAAAATTTGGATCTGGGTCGAGTTGGGTCGAGTTGAATTATGACGAGACAAAAAATTCAGATTAAAAAAATCGATAATATAGCAGCTAGGCAAGTGACGTTTTCAAAGAGGAGAAGAGGGCTGTTCAAGAAAGCTCATGAACTTGCTACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGATTATTCTAGCTCAAGGCATATGAAGGGAGAAGAACTTGAAGAACTTGGAATAGAAGAATTAAAGCAGCTCGAGAAATTGCTCGAGATTGGTTTGAATCGTGTCATAGAGACAAAGGATGAAAAGTTTCTAAAAGAGATCGAGGCTGTCAAGGAGAAGGTCGATAATCGATTTTTGAAAATTAAGCTTATAATCACTACTTCTACGTAACACAACAGCTTCCTAACTTTTTCGAATTTGGCTAAGAATTCAAGTGCTTACATGATTTTCAAGAACAAAATGGATTATCGAAAAGGGTCTTAAATATTCTCGAGCACGAACGATAAAAATGCGAACCCGCTTCATATAATACATGAATATTGATTGCAGGAAGCTTTGCTGATGAAAGAGAATCAGAGATTGAGGAATCAAGTGAGAGCTTTGAATAGAGATGAGCAAGAACAGCAAGCAGTGGGTGTTGGTGGGAGCTCCTTGGGCTCAAAGTCAATCACTAGCAATAGCAGCTCCTCACCAAACCCTAGTTCCCAAGATTGTGATGATATTTCTCTCAAATTGGGTCTTTGAAGGCTCAAAGTATGCGATTCTCTGCAGCAGCTTGGCAATGCAAGCTCAGCCTTCTCTAATGGAGCTTTTACTAATCACTGGACTGCCAAAGCCACTCCTATTTGCATACAGACAATAAGGATGTGAAAAGGCCAATTCATTCAATATCATATCATGTTTTCAAAGCAGAAATGAGTTACATACATGAATATTGTTTCTGCATACCAATTGATTAAGAGTTGATGAAACTTTCAAAGGGAGTTTTATAAGGAAAATGACACTTCTCAGACAAAGTAAACGAACCTGCGTGCCTGCTGATCTTGAAGCACATACATCATAAATATATTGTAAAGCCCCTAGTCTACAGCTAGCCGATATTGTCATCTTTGGATTTTTCCTTCTGAGTTTTTTCTCAAGGTTTTAAAACATGTCTATTAGGGAGAGGTTTCCGTACCTTTATAAATAATACTTTGTTCCCCTCTCTAACC

Coding sequence (CDS)

ATGACGAGACAAAAAATTCAGATTAAAAAAATCGATAATATAGCAGCTAGGCAAGTGACGTTTTCAAAGAGGAGAAGAGGGCTGTTCAAGAAAGCTCATGAACTTGCTACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGATTATTCTAGCTCAAGGCATATGAAGGGAGAAGAACTTGAAGAACTTGGAATAGAAGAATTAAAGCAGCTCGAGAAATTGCTCGAGATTGGTTTGAATCGTGTCATAGAGACAAAGGATGAAAAGTTTCTAAAAGAGATCGAGGCTGTCAAGGAGAAGGTCGATAATCGATTTTTGAAAATTAAGCTTATAATCACTACTTCTACGTAA

Protein sequence

MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSRHMKGEELEELGIEELKQLEKLLEIGLNRVIETKDEKFLKEIEAVKEKVDNRFLKIKLIITTST
Homology
[Close]
BLAST of Carg19728 vs. NCBI nr
Match: XP_022922528.1 (MADS-box protein SVP-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 3.2e-42
Identity = 108/152 (71.05%), Postives = 108/152 (71.05%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS
Sbjct: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  --------------------------------------------RHMKGEELEELGIEEL 109
                                                       RHMKGEELEELGIEEL
Sbjct: 61  SMHELLGRHNKLPEVNNFCQPLFQMEKSVCANLREEFAAKTKELRHMKGEELEELGIEEL 120

[Close]
BLAST of Carg19728 vs. NCBI nr
Match: XP_022924973.1 (MADS-box protein SVP-like [Cucurbita moschata] >XP_023518529.1 MADS-box protein SVP-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.9 bits (424), Expect = 2.1e-38
Identity = 100/153 (65.36%), Postives = 106/153 (69.28%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS
Sbjct: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  ---------------------------------------------RHMKGEELEELGIEE 109
                                                        +HM+GE+L++LGIEE
Sbjct: 61  SMQELLRRHNMIPEVNSFGQQPPSQVEKDAYAKLSEEFAAKTKELKHMRGEDLQDLGIEE 120

[Close]
BLAST of Carg19728 vs. NCBI nr
Match: XP_022966455.1 (MADS-box protein SVP-like [Cucurbita maxima])

HSP 1 Score: 167.9 bits (424), Expect = 2.1e-38
Identity = 100/153 (65.36%), Postives = 106/153 (69.28%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS
Sbjct: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  ---------------------------------------------RHMKGEELEELGIEE 109
                                                        +HM+GE+L++LGIEE
Sbjct: 61  SMQELLRRHNMIPEVNNFGQQPPSQLEKDAYAKLSEEFAAKTKELKHMRGEDLQDLGIEE 120

[Close]
BLAST of Carg19728 vs. NCBI nr
Match: XP_022149232.1 (MADS-box protein JOINTLESS-like [Momordica charantia])

HSP 1 Score: 166.4 bits (420), Expect = 6.2e-38
Identity = 99/156 (63.46%), Postives = 106/156 (67.95%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKI+IKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYS+S
Sbjct: 1   MTRQKIEIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSTS 60

Query: 61  ------------------------------------------------RHMKGEELEELG 109
                                                           RHM+GEEL+ LG
Sbjct: 61  STQELLRRQNMVPENNNFTQPVAVASSQLGNSVHAELAEEFATKTNELRHMRGEELQGLG 120

[Close]
BLAST of Carg19728 vs. NCBI nr
Match: XP_022922526.1 (MADS-box protein SVP-like isoform X1 [Cucurbita moschata] >XP_022922527.1 MADS-box protein SVP-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 156.0 bits (393), Expect = 8.4e-35
Identity = 97/153 (63.40%), Postives = 97/153 (63.40%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS
Sbjct: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60

Query: 61  ---------------------------------------------RHMKGEELEELGIEE 109
                                                        RHMKGE         
Sbjct: 61  SMHELLGRHNKLPEVNNFCQPLFQQMEKSVCANLREEFAAKTKELRHMKGEXXXXXXXXX 120

[Close]
BLAST of Carg19728 vs. TAIR10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 120.2 bits (300), Expect = 9.2e-28
Identity = 73/150 (48.67%), Postives = 87/150 (58.00%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R+KIQI+KIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLF++ SS
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  ------------------------------------------------RHMKGEELEELG 103
                                                           R M+GEEL+ L 
Sbjct: 61  SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLD 120

[Close]
BLAST of Carg19728 vs. TAIR10
Match: AT4G24540.1 (AGAMOUS-like 24)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-25
Identity = 69/156 (44.23%), Postives = 93/156 (59.62%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R+KI+IKKIDNI ARQVTFSKRRRG+FKKA EL+ LCDAD+ALI+FSA+GKLF++SSS
Sbjct: 1   MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61  ------------------------------------------------RHMKGEELEELG 109
                                                           R ++GE+L+ L 
Sbjct: 61  RMRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLN 120

[Close]
BLAST of Carg19728 vs. TAIR10
Match: AT5G51870.3 (AGAMOUS-like 71)

HSP 1 Score: 88.6 bits (218), Expect = 3.0e-18
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 0 

Query: 1  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
          M R KI+IKKI+N+ +RQVTFSKRR GLFKKAHEL+ LCDA +A IVFS SG+L +YSSS
Sbjct: 1  MVRGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAIVFSQSGRLHEYSSS 60

Query: 61 RHMK-----GEELEELGIEELKQLEKLLE 85
          +  K     G+      + E  Q+E+ L+
Sbjct: 61 QMEKIIDRYGKFSNAFYVAERPQVERYLQ 89

[Close]
BLAST of Carg19728 vs. TAIR10
Match: AT2G42830.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 88.2 bits (217), Expect = 3.9e-18
Identity = 59/171 (34.50%), Postives = 86/171 (50.29%), Query Frame = 0 

Query: 3   RQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSS--- 62
           R KI+IK+I+N   RQVTF KRR GL KKA+EL+ LCDA++AL++FS  G+L++Y++   
Sbjct: 18  RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSV 77

Query: 63  ---------------------------------------------SRHMKGEELEELGIE 119
                                                        +RH+ GE L  L  +
Sbjct: 78  RGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFK 137

[Close]
BLAST of Carg19728 vs. TAIR10
Match: AT5G51860.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 84.7 bits (208), Expect = 4.3e-17
Identity = 38/60 (63.33%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 1  MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
          M R KI+IKKI+N+ +RQVTFSKRR GLFKKAHEL+ LCDA +A ++FS  G+L++++SS
Sbjct: 1  MVRGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKGRLYEFASS 60

[Close]
BLAST of Carg19728 vs. Swiss-Prot
Match: sp|Q9FUY6|JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.0e-28
Identity = 76/156 (48.72%), Postives = 93/156 (59.62%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R+KIQIKKIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLFDYSSS
Sbjct: 1   MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

Query: 61  ------------------------------------------------RHMKGEELEELG 109
                                                           R M+GEEL+ L 
Sbjct: 61  SMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLN 120

[Close]
BLAST of Carg19728 vs. Swiss-Prot
Match: sp|Q9FVC1|SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-26
Identity = 73/150 (48.67%), Postives = 87/150 (58.00%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R+KIQI+KIDN  ARQVTFSKRRRGLFKKA EL+ LCDAD+ALI+FS++GKLF++ SS
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  ------------------------------------------------RHMKGEELEELG 103
                                                           R M+GEEL+ L 
Sbjct: 61  SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLD 120

[Close]
BLAST of Carg19728 vs. Swiss-Prot
Match: sp|O82794|AGL24_ARATH (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-24
Identity = 69/156 (44.23%), Postives = 93/156 (59.62%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R+KI+IKKIDNI ARQVTFSKRRRG+FKKA EL+ LCDAD+ALI+FSA+GKLF++SSS
Sbjct: 1   MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61  ------------------------------------------------RHMKGEELEELG 109
                                                           R ++GE+L+ L 
Sbjct: 61  RMRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQLRKLRGEDLDGLN 120

[Close]
BLAST of Carg19728 vs. Swiss-Prot
Match: sp|Q9XJ66|MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS22 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-23
Identity = 68/155 (43.87%), Postives = 92/155 (59.35%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R++ +IK+I++ AARQVTFSKRRRGLFKKA EL+ LCDAD+ALIVFS++GKL  ++SS
Sbjct: 1   MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS 60

Query: 61  -----------------------------------------------RHMKGEELEELGI 109
                                                          R M+GEELE L I
Sbjct: 61  SMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSI 120

[Close]
BLAST of Carg19728 vs. Swiss-Prot
Match: sp|Q5K4R0|MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 8.5e-23
Identity = 64/154 (41.56%), Postives = 88/154 (57.14%), Query Frame = 0 

Query: 3   RQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS-- 62
           R++I I++IDN+AARQVTFSKRRRGLFKKA EL+ LCDA++ L+VFSA+GKLF ++S+  
Sbjct: 22  RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSM 81

Query: 63  ----------------------------------------------RHMKGEELEELGIE 109
                                                         R M+GEEL  L +E
Sbjct: 82  EQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVE 141

[Close]
BLAST of Carg19728 vs. TrEMBL
Match: tr|A0A061E173|A0A061E173_THECC (MIKC mads-box transcription factor, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_007378 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 86/156 (55.13%), Postives = 99/156 (63.46%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDN AARQVTFSKRRRGLFKKAHEL+TLCDA+IAL+VFSA+GKLF+YSS+
Sbjct: 1   MTRQKIQIKKIDNTAARQVTFSKRRRGLFKKAHELSTLCDAEIALVVFSATGKLFEYSST 60

Query: 61  ------------------------------------------------RHMKGEELEELG 109
                                                           RH++GEEL+ L 
Sbjct: 61  STGQVIERRNLQSERTNGLDRVPSLEMQIESSAHAMLGKEIAEKNRELRHLRGEELQGLN 120

[Close]
BLAST of Carg19728 vs. TrEMBL
Match: tr|A0A061E2Z6|A0A061E2Z6_THECC (MIKC mads-box transcription factor, putative isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_007378 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 86/156 (55.13%), Postives = 99/156 (63.46%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKIQIKKIDN AARQVTFSKRRRGLFKKAHEL+TLCDA+IAL+VFSA+GKLF+YSS+
Sbjct: 1   MTRQKIQIKKIDNTAARQVTFSKRRRGLFKKAHELSTLCDAEIALVVFSATGKLFEYSST 60

Query: 61  ------------------------------------------------RHMKGEELEELG 109
                                                           RH++GEEL+ L 
Sbjct: 61  STGQVIERRNLQSERTNGLDRVPSLEMQIESSAHAMLGKEIAEKNRELRHLRGEELQGLN 120

[Close]
BLAST of Carg19728 vs. TrEMBL
Match: tr|A0A2P5FKN5|A0A2P5FKN5_9ROSA (MADS-box transcription factor OS=Trema orientalis OX=63057 GN=TorMADS40 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.8e-31
Identity = 87/164 (53.05%), Postives = 105/164 (64.02%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKI+IKKIDNI ARQVTFSKRRRGLFKKA EL+TLCDA++ALIVFS++GKL+DYSSS
Sbjct: 1   MTRQKIEIKKIDNITARQVTFSKRRRGLFKKAQELSTLCDAEMALIVFSSTGKLYDYSSS 60

Query: 61  --------------------------------------------RHMKGEELEELGIEEL 116
                                                       R MKGE+LE+LG++EL
Sbjct: 61  SMQKVIERHNFQSEHPAKSSQPSLDELERYASLSKELAEKTTEIRQMKGEKLEDLGLDEL 120

[Close]
BLAST of Carg19728 vs. TrEMBL
Match: tr|A0A2P5ALU1|A0A2P5ALU1_PARAD (MADS-box transcription factor OS=Parasponia andersonii OX=3476 GN=PanMADS40 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.1e-30
Identity = 86/164 (52.44%), Postives = 103/164 (62.80%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           MTRQKI+IKKI+NI ARQVTFSKRRRGLFKKA EL+TLCDA++ALIVFS++GKL+DYSSS
Sbjct: 1   MTRQKIEIKKINNITARQVTFSKRRRGLFKKAQELSTLCDAEMALIVFSSTGKLYDYSSS 60

Query: 61  --------------------------------------------RHMKGEELEELGIEEL 116
                                                       R MKGE+LE+LG++EL
Sbjct: 61  SMQKVIERRYFQSEHPAKSSQPSVDELERYASLSKELAEKTTEIRQMKGEKLEDLGLDEL 120

[Close]
BLAST of Carg19728 vs. TrEMBL
Match: tr|A0A1U8L0W0|A0A1U8L0W0_GOSHI (MADS-box protein SVP-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107921301 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 76/148 (51.35%), Postives = 103/148 (69.59%), Query Frame = 0 

Query: 1   MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSS 60
           M R+KI+IKKIDN+ ARQVTFSKRRRGLFKKA EL+ LCDA++ALI+FSA+GKLF+++SS
Sbjct: 1   MAREKIKIKKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFASS 60

Query: 61  -----------------------------RHMKGEELEELGIEELKQLEKLLEIGLNRVI 120
                                        R ++GE+L+ L I+EL+QLEKLLE+GL RV+
Sbjct: 61  SMKDMLGRYNLHSNKLDQPSLELQSLIYNRQIRGEDLQGLNIDELQQLEKLLELGLTRVL 120

The following BLAST results are available for this feature:
BLAST of Carg19728 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922528.13.2e-4271.05MADS-box protein SVP-like isoform X2 [Cucurbita moschata][more]
XP_022924973.12.1e-3865.36MADS-box protein SVP-like [Cucurbita moschata] >XP_023518529.1 MADS-box protein ... [more]
XP_022966455.12.1e-3865.36MADS-box protein SVP-like [Cucurbita maxima][more]
XP_022149232.16.2e-3863.46MADS-box protein JOINTLESS-like [Momordica charantia][more]
XP_022922526.18.4e-3563.40MADS-box protein SVP-like isoform X1 [Cucurbita moschata] >XP_022922527.1 MADS-b... [more]
BLAST of Carg19728 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G22540.19.2e-2848.67K-box region and MADS-box transcription factor family protein [more]
AT4G24540.11.5e-2544.23AGAMOUS-like 24[more]
AT5G51870.33.0e-1855.06AGAMOUS-like 71[more]
AT2G42830.23.9e-1834.50K-box region and MADS-box transcription factor family protein [more]
AT5G51860.14.3e-1763.33K-box region and MADS-box transcription factor family protein [more]
BLAST of Carg19728 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FUY6|JOIN_SOLLC4.0e-2848.72MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1[more]
sp|Q9FVC1|SVP_ARATH1.7e-2648.67MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1[more]
sp|O82794|AGL24_ARATH2.7e-2444.23MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1[more]
sp|Q9XJ66|MAD22_ORYSJ1.7e-2343.87MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
sp|Q5K4R0|MAD47_ORYSJ8.5e-2341.56MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
BLAST of Carg19728 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A061E173|A0A061E173_THECC1.3e-3155.13MIKC mads-box transcription factor, putative isoform 1 OS=Theobroma cacao OX=364... [more]
tr|A0A061E2Z6|A0A061E2Z6_THECC1.3e-3155.13MIKC mads-box transcription factor, putative isoform 2 OS=Theobroma cacao OX=364... [more]
tr|A0A2P5FKN5|A0A2P5FKN5_9ROSA4.8e-3153.05MADS-box transcription factor OS=Trema orientalis OX=63057 GN=TorMADS40 PE=4 SV=... [more]
tr|A0A2P5ALU1|A0A2P5ALU1_PARAD3.1e-3052.44MADS-box transcription factor OS=Parasponia andersonii OX=3476 GN=PanMADS40 PE=4... [more]
tr|A0A1U8L0W0|A0A1U8L0W0_GOSHI1.6e-2951.35MADS-box protein SVP-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC1079213... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR002487TF_Kbox
IPR036879TF_MADSbox_sf
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19728-RACarg19728-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 3..23
score: 57.9
coord: 38..59
score: 56.81
coord: 23..38
score: 67.72
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 6.4E-38
score: 142.0
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 1.0E-24
score: 85.6
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 28.539
IPR036879Transcription factor, MADS-box superfamilyGENE3DG3DSA:3.40.1810.10coord: 14..69
e-value: 1.7E-24
score: 87.1
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILYSSF55455SRF-likecoord: 2..64
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 59..110
e-value: 1.3E-11
score: 44.5
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 33..124
score: 7.422
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 61..108
coord: 1..60
NoneNo IPR availablePANTHERPTHR11945:SF179MADS-BOX PROTEIN SVPcoord: 61..108
coord: 1..60