Carg19657 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19657
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Polyadenylate-binding protein
Location	Cucurbita_argyrosperma_scaffold_133 : 2 .. 3034 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTCTTTTAGTGCAGTTTCATCTGCCCTCCAAAACTTCGCGTTTTTATTACCGTCGAGTCTACGTCGCTCTCTACGTCACGCGCCGCCCCGGTTTCCGGCGGCTAGTCATCTCTTCTTTCGGATCCTTCCGATTATCTATCCGGTCCTCGTCCTTCCCTCTCCTTTTTCCACTATCATTCTCATCCTGAAAAACCAAAACTATTATTCGTTTTAGGAGTAGGAAGATTTTTCCTTGGGGGTTGTTAATTTTTGGTTCAATTTCTAATATCGTAAGGGTTTTTGTTGTCCTCCCCGGTTGTTCATTGCGTTTTGCTGGCCTTTTTTGAGTGTCTGAAGAATCGCCGTTTATTGATTCCTTCTTAGGGTTCGTTTCTGAATAACAAAAGGAGAGGGAAGTGAGGGGAAAAAAAGGCAAAAAAATTAATTTATTGAAAGATTTTTTTTGGAAAGTAGTGAAATTATTTCGAGTATGGCGGCTCAGGTGCAATCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTCAACGTCACGGATTCGCAGCTTTATGATATATTTAATCAGGTGGGTCAGGTGGTCTCGGTTCGCGTTTGCCGAGACTTGACGACCCGACGATCTCTTGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGGTTAGTATGCCCTCTCTTTTCTTTGCTTCTCTTTCGGTGTTTAATGTACTTTGTTTATTGTTGTTAGTTCAATTTCGGTGGTGCACATTTCTTAGCCGGTTGACTGATTGCTTAGACTGGTAAAATGCTGAGGTTATGTTAAATATTAGGGTGGATCATGTCTATTAATTCATTCATGTATCAAGATAATTGAGCCCCACCGATCCCGGAAAGAAAAGCGTTTAGCAATCTGATGTAAGTGGGGAAAATTAGTGACGCTATAGGGGATAACTGTTCTAAAAGGTTGGGCAGATGGTTTGGGGTTGGGGCTCTAACGAATAATTTTTGCTGTCTGATGGTCATTTCTCAATACAAGACATGGAGAAAACCTGGTCATTTTATTATTTGGAGAACTGGATCATGGGCCCGTTTGGTGGGCTGGGAGATGCTGAGGGTCATCTTATTGCATTATGATGTTTCACGGTTATGAAGTTCGTCTATTTGGAAGATGATCAAGGAAAATATGTAATGGATACGCCTCATGTTCCTATAGATATGGCTTTTGGTTATAACAATTTTATTAAGATAGCAAGAACAGGGATGATCTTAAGCTAGCCTTGTGTAGCGTGCATATTTTAAGTTGATTTTTGGTTTCACTCTTGGGCTAAGTGATTGCATGTCCTTCATTGAAGCAAACGATCCATGTCAAAATCAATTTGAATTTTTAATTACGCTTCACCTCTAGCAATTTTGCTTAATTTTGGCAAGCTTGTTGTAAAGTTTTCAACAGGTAAGTTTGTGCTTTGAATTATTTAAGCTTTTTTCACTGTTGGAATTAGTGATTTTAGGACTTTTGATCCTTGTCCTCTCTTGTCATTTGAAAAGAAAATTGTATTTCAGGCTATCATGTGGTCCAAACAATGATATCACAGTCATTATTGCTTCAGATTCTTATATCTGATCTTATACCTCAATGAACTTTAAATGGCCACATCTTTCTTCCTAATACAATCATCTTTTTCATGAACAGCTGCAAGAGCATTGGATGTGCTGAATTTTACCCCTCTTAATGGAAAGCCTATAAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCAGGAAATATATTTATCAAGGTATCAGTATTTTTCATATTATATGTGCTTGTATCTTGTTCATTTTATTCAAGTTGATTATTTGATTCTGTTCCCAAGTTAATTTTGCATTTTAATTTTTTCAGAATTTAGACAAAGCAATTGACCACAAAGCTCTGCATGATACGTTTTCTGCATTTGGTAGTATCCTGTCCTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGGTCAGAAAGCAATTGAGAAGCTGAACGGCATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCTTTTCTTCGTAAGCAAGAAAGAGACGGTGTTGTTGACAAGTCGAAATTTAACAACGTTTTTGTAAAGAATTTTTCTGAGACAACTTCTGAAGAAGAATTGAATGATGTTTTTTCTGAATTTGGGACAATCACCAGTATTGTTGTGATGAGGGATGCTGATGGAAAATCAAAATGCTTTGGATTTGTGAATTTTGAAAGTGCCGATGATGCTGCTAGAGCAGTTGATGCCCTTAATGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGAACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCGAACTTATACATCAAAAATTTGGATGATAGCATTGTTGATGATAAGCTTAAGGAGCTGTTTGCTTCATTTGGCACAATCACATCATGCAAGGTTATAATTTAATTTTTATTCAAGTGCAATTCTCTACATGTTTAGGCCTTTCACGGTTAAAGTATTATGGTTATATTGTGTAATTCAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGATCTGGATTTGTTGCATTCTCAACACCCGAAGAGGCTTCTAGGGCTGTGAGTGGATGTGCTTATTTCTTTTCCCTTCTATATATGATTTGTTTTCAATTCAGAAACATCCCTACACAAAATTGATGTAATAGCTGTTTATTTTCTGTATATGCCTGTCATTAATAATACAAAATATGGAAGAAATGTAATGGTTCACTGGTGTAATTGATAGCTTATGGAGATGAATGGAAAAATGGTTGTTAGCAAACCGTTGTATGTAGCACTTGCACAACGGAAGGAAGATAGAAGAGCCAGATTGCAGGTA

mRNA sequence

TCTTTCTTTTAGTGCAGTTTCATCTGCCCTCCAAAACTTCGCGTTTTTATTACCGTCGAGTCTACGTCGCTCTCTACGTCACGCGCCGCCCCGGTTTCCGGCGGCTAGTCATCTCTTCTTTCGGATCCTTCCGATTATCTATCCGGTCCTCGTCCTTCCCTCTCCTTTTTCCACTATCATTCTCATCCTGAAAAACCAAAACTATTATTCGTTTTAGGAGTAGGAAGATTTTTCCTTGGGGGTTGTTAATTTTTGGTTCAATTTCTAATATCGTAAGGGTTTTTGTTGTCCTCCCCGGTTGTTCATTGCGTTTTGCTGGCCTTTTTTGAGTGTCTGAAGAATCGCCGTTTATTGATTCCTTCTTAGGGTTCGTTTCTGAATAACAAAAGGAGAGGGAAGTGAGGGGAAAAAAAGGCAAAAAAATTAATTTATTGAAAGATTTTTTTTGGAAAGTAGTGAAATTATTTCGAGTATGGCGGCTCAGGTGCAATCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTCAACGTCACGGATTCGCAGCTTTATGATATATTTAATCAGGTGGGTCAGGTGGTCTCGGTTCGCGTTTGCCGAGACTTGACGACCCGACGATCTCTTGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAATTTTACCCCTCTTAATGGAAAGCCTATAAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCAGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTCTGCATGATACGTTTTCTGCATTTGGTAGTATCCTGTCCTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGGTCAGAAAGCAATTGAGAAGCTGAACGGCATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCTTTTCTTCGTAAGCAAGAAAGAGACGGTGTTGTTGACAAGTCGAAATTTAACAACGTTTTTGTAAAGAATTTTTCTGAGACAACTTCTGAAGAAGAATTGAATGATGTTTTTTCTGAATTTGGGACAATCACCAGTATTGTTGTGATGAGGGATGCTGATGGAAAATCAAAATGCTTTGGATTTGTGAATTTTGAAAGTGCCGATGATGCTGCTAGAGCAGTTGATGCCCTTAATGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGAACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCGAACTTATACATCAAAAATTTGGATGATAGCATTGTTGATGATAAGCTTAAGGAGCTGTTTGCTTCATTTGGCACAATCACATCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGATCTGGATTTGTTGCATTCTCAACACCCGAAGAGGCTTCTAGGGCTCTTATGGAGATGAATGGAAAAATGGTTGTTAGCAAACCGTTGTATGTAGCACTTGCACAACGGAAGGAAGATAGAAGAGCCAGATTGCAGGTA

Coding sequence (CDS)

ATGGCGGCTCAGGTGCAATCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTCAACGTCACGGATTCGCAGCTTTATGATATATTTAATCAGGTGGGTCAGGTGGTCTCGGTTCGCGTTTGCCGAGACTTGACGACCCGACGATCTCTTGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAATTTTACCCCTCTTAATGGAAAGCCTATAAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCAGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTCTGCATGATACGTTTTCTGCATTTGGTAGTATCCTGTCCTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGGTCAGAAAGCAATTGAGAAGCTGAACGGCATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCTTTTCTTCGTAAGCAAGAAAGAGACGGTGTTGTTGACAAGTCGAAATTTAACAACGTTTTTGTAAAGAATTTTTCTGAGACAACTTCTGAAGAAGAATTGAATGATGTTTTTTCTGAATTTGGGACAATCACCAGTATTGTTGTGATGAGGGATGCTGATGGAAAATCAAAATGCTTTGGATTTGTGAATTTTGAAAGTGCCGATGATGCTGCTAGAGCAGTTGATGCCCTTAATGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGAACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCGAACTTATACATCAAAAATTTGGATGATAGCATTGTTGATGATAAGCTTAAGGAGCTGTTTGCTTCATTTGGCACAATCACATCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGATCTGGATTTGTTGCATTCTCAACACCCGAAGAGGCTTCTAGGGCTCTTATGGAGATGAATGGAAAAATGGTTGTTAGCAAACCGTTGTATGTAGCACTTGCACAACGGAAGGAAGATAGAAGAGCCAGATTGCAGGTA

Protein sequence

MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVMRDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQV

Homology

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BLAST of Carg19657 vs. NCBI nr
Match: XP_023552256.1 (polyadenylate-binding protein 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 775.8 bits (2002), Expect = 7.2e-221
Identity = 396/397 (99.75%), Postives = 396/397 (99.75%), Query Frame = 0


Query: 1   MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDK KFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKLKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 240

Query: 241 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 300
           RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT
Sbjct: 241 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

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BLAST of Carg19657 vs. NCBI nr
Match: XP_022922698.1 (polyadenylate-binding protein 8-like [Cucurbita moschata])

HSP 1 Score: 773.5 bits (1996), Expect = 3.5e-220
Identity = 395/397 (99.50%), Postives = 395/397 (99.50%), Query Frame = 0


Query: 1   MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MAAQVQSQ QNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQSQSQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 240

Query: 241 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 300
           RDADGKSKCFGFVNFES DDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT
Sbjct: 241 RDADGKSKCFGFVNFESVDDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]

BLAST of Carg19657 vs. NCBI nr
Match: XP_022984704.1 (polyadenylate-binding protein 8-like [Cucurbita maxima])

HSP 1 Score: 773.1 bits (1995), Expect = 4.6e-220
Identity = 394/397 (99.24%), Postives = 396/397 (99.75%), Query Frame = 0


Query: 1   MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 240
           LLNDKQV+VGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELND+FSEFGTITSIVVM
Sbjct: 181 LLNDKQVFVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDIFSEFGTITSIVVM 240

Query: 241 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 300
           RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT
Sbjct: 241 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           PEEAS ALMEMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PEEASWALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]

BLAST of Carg19657 vs. NCBI nr
Match: XP_008456142.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 753.4 bits (1944), Expect = 3.8e-214
Identity = 382/397 (96.22%), Postives = 391/397 (98.49%), Query Frame = 0


Query: 1   MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MAAQVQ+QPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEES QKAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKN SETT+EE+LN  FSEFGT+TSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 300
           RDADGKS+CFGFVNFE+ADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELK+RFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSI DDKLKELFA FGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           P+EASRAL+EMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]

BLAST of Carg19657 vs. NCBI nr
Match: XP_004140705.1 (PREDICTED: polyadenylate-binding protein 8-like [Cucumis sativus] >KGN57514.1 hypothetical protein Csa_3G202720 [Cucumis sativus])

HSP 1 Score: 747.7 bits (1929), Expect = 2.1e-212
Identity = 379/397 (95.47%), Postives = 388/397 (97.73%), Query Frame = 0


Query: 1   MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MA QVQ+QPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEES  KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKN SETT+EE+LN  FSEFGT+TSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 300
           RDADGKS+CFGFVNFE+ADDAARAVD LNGKLVDDKEWYVGKAQKKSEREVELK+RFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSI DDKLKELFA FGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           P+EASRAL+EMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]

BLAST of Carg19657 vs. TAIR10
Match: AT4G34110.1 (poly(A) binding protein 2)

HSP 1 Score: 582.8 bits (1501), Expect = 1.6e-166
Identity = 289/403 (71.71%), Postives = 346/403 (85.86%), Query Frame = 0


Query: 3   AQVQSQ---PQNAISGIN--PAANGGA---NFVTTSLYVGDLDLNVTDSQLYDIFNQVGQ 62
           AQVQ Q   P  + + +   PA +GGA    F  TSLYVGDLD NVTDSQL+D F Q+G 
Sbjct: 2   AQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGT 61

Query: 63  VVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKS 122
           VV+VRVCRDL TRRSLGYGYVN++NPQDAARA+  LN+ PL GKPIRVMYSHRDPS+R+S
Sbjct: 62  VVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRS 121

Query: 123 GAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAI 182
           GAGNIFIKNLD++IDHKALHDTFS+FG+I+SCKVA+DSSGQSKGYGFVQ+ NEES QKAI
Sbjct: 122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAI 181

Query: 183 EKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTI 242
           EKLNGMLLNDKQVYVGPFLR+QERD   +K+KF NV+VKN +E+T++++L + F E+G I
Sbjct: 182 EKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI 241

Query: 243 TSIVVMRDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELK 302
           TS VVM+D +GKSK FGFVNFE+ADDAARAV++LNG   DDKEWYVG+AQKKSERE EL+
Sbjct: 242 TSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELR 301

Query: 303 NRFEQTMKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSG 362
            R+EQ +KEAADK+Q +NLY+KNLD SI D+KLKE+F+ FGT+TS KVMRDPNG S+GSG
Sbjct: 302 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSG 361

Query: 363 FVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           FVAF+TPEEA+ A+ +++GKM+ SKPLYVA+AQRKEDRR RLQ
Sbjct: 362 FVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQ 404

[Close]

BLAST of Carg19657 vs. TAIR10
Match: AT1G49760.1 (poly(A) binding protein 8)

HSP 1 Score: 580.9 bits (1496), Expect = 6.1e-166
Identity = 286/369 (77.51%), Postives = 327/369 (88.62%), Query Frame = 0


Query: 29  TSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 88
           TSLYVGDLD  VTDSQL++ F Q GQVVSVRVCRD+TTRRSLGYGYVNY+ PQDA+RAL+
Sbjct: 45  TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104

Query: 89  VLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKV 148
            LNF  LNG+ IRVMYS RDPS+RKSG GNIFIKNLDK+IDHKALH+TFSAFG ILSCKV
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164

Query: 149 ALDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFN 208
           A+D SGQSKGYGFVQ+D +E+ Q AI+KLNGMLLNDKQVYVGPF+ K +RD   +K KF 
Sbjct: 165 AVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFT 224

Query: 209 NVFVKNFSETTSEEELNDVFSEFGTITSIVVMRDADGKSKCFGFVNFESADDAARAVDAL 268
           NV+VKN SE+ S+EELN VF EFG  TS V+MRD +GKSK FGFVNFE++DDAARAVDAL
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284

Query: 269 NGKLVDDKEWYVGKAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSIVDDKLK 328
           NGK  DDKEW+VGKAQKKSERE ELK +FEQ++KEAADK QG+NLY+KNLD+S+ DDKL+
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344

Query: 329 ELFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQR 388
           E FA FGTITSCKVMRDP+G+SRGSGFVAFSTPEEA+RA+ EMNGKM+V+KPLYVALAQR
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQR 404

Query: 389 KEDRRARLQ 398
           KEDR+ARLQ
Sbjct: 405 KEDRKARLQ 413

[Close]

BLAST of Carg19657 vs. TAIR10
Match: AT2G23350.1 (poly(A) binding protein 4)

HSP 1 Score: 523.9 bits (1348), Expect = 8.9e-149
Identity = 253/368 (68.75%), Postives = 302/368 (82.07%), Query Frame = 0


Query: 30  SLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 89
           SLYVGDLD NVTDSQLYD F +V QVVSVRVCRD  T  SLGYGYVNYSN  DA +A+  
Sbjct: 47  SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106

Query: 90  LNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVA 149
           LN++ LNGK IR+ YS RD S R+SG GN+F+KNLDK++D+K LH+ FS  G+I+SCKVA
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166

Query: 150 LDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNN 209
            D  GQS+GYGFVQFD E+S + AIEKLNG +LNDKQ++VGPFLRK+ER+   DK KF N
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTN 226

Query: 210 VFVKNFSETTSEEELNDVFSEFGTITSIVVMRDADGKSKCFGFVNFESADDAARAVDALN 269
           V+VKN SE T+++EL   F ++G+I+S VVMRD DGKS+CFGFVNFE+ +DAARAV+ALN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286

Query: 270 GKLVDDKEWYVGKAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSIVDDKLKE 329
           GK  DDKEWYVGKAQKKSERE+EL  R+EQ   +  +K+ G NLY+KNLDD++ D+KL+E
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346

Query: 330 LFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRK 389
           LFA FGTITSCKVMRDP+G S+GSGFVAFS   EASR L EMNGKMV  KPLYVALAQRK
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406

Query: 390 EDRRARLQ 398
           E+RRA+LQ
Sbjct: 407 EERRAKLQ 414

[Close]

BLAST of Carg19657 vs. TAIR10
Match: AT1G22760.1 (poly(A) binding protein 3)

HSP 1 Score: 459.5 bits (1181), Expect = 2.1e-129
Identity = 238/397 (59.95%), Postives = 294/397 (74.06%), Query Frame = 0


Query: 3   AQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCR 62
           AQ   Q   +I   +P          +SLY GDLD  VT++ L+D+F  V  VVSVRVCR
Sbjct: 23  AQTSVQVPVSIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCR 82

Query: 63  DLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIK 122
           D   RRSLGY Y+N+SNP DA RA++ LN+TPL  +PIR+M S+RDPS R SG GNIFIK
Sbjct: 83  D-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIK 142

Query: 123 NLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLL 182
           NLD +ID+KAL +TFS+FG+ILSCKVA+D +G+SKGYGFVQF+ EES Q AI+KLNGML+
Sbjct: 143 NLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLM 202

Query: 183 NDKQVYVGPFLRKQE--RDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 242
           NDKQV+VG F+R+QE  RD      +F NV+VKN  +   E+EL   F +FG I+S VVM
Sbjct: 203 NDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVM 262

Query: 243 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 302
           RD  G S+CFGFVNFE  + AA AV+ +NG  + D   YVG+AQKKSERE EL+ +FEQ 
Sbjct: 263 RDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQE 322

Query: 303 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 362
                +K QGANLY+KNLDDS+ D+KLKE+F+ +G +TS KVM +P G+SRG GFVA+S 
Sbjct: 323 RINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSN 382

Query: 363 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           PEEA RAL EMNGKM+  KPLY+ALAQRKEDRRA LQ
Sbjct: 383 PEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQ 418

[Close]

BLAST of Carg19657 vs. TAIR10
Match: AT1G71770.1 (poly(A)-binding protein 5)

HSP 1 Score: 438.0 bits (1125), Expect = 6.4e-123
Identity = 221/373 (59.25%), Postives = 289/373 (77.48%), Query Frame = 0


Query: 29  TSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 88
           +SLYVGDLD +V +S L D+FNQV  V ++RVCRDL T RSLGY YVN++NP+DA+RA++
Sbjct: 59  SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 118

Query: 89  VLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKV 148
            LN+ P+  +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG+ILSCKV
Sbjct: 119 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 178

Query: 149 ALDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLLNDKQVYVGPFLRKQER----DGVVDK 208
           A+D  G+SKGYGFVQF+ EE+ Q AI+KLNGMLLNDKQV+VG F+R+Q+R     G V  
Sbjct: 179 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAV-- 238

Query: 209 SKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVMRDADGKSKCFGFVNFESADDAARA 268
             F NV+VKN  +  +++EL   F ++G I+S VVM+D  G S+ FGFVNF S + AA A
Sbjct: 239 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVA 298

Query: 269 VDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSIVD 328
           V+ +NG  + +   YVG+AQKKS+RE EL+ +FEQ      +K QG+NLY+KNLDDS+ D
Sbjct: 299 VEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVND 358

Query: 329 DKLKELFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVA 388
           +KLKE+F+ +G +TSCKVM +  G+SRG GFVA+S PEEA  A+ EMNGKM+  KPLYVA
Sbjct: 359 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 418

Query: 389 LAQRKEDRRARLQ 398
           LAQRKE+R+A LQ
Sbjct: 419 LAQRKEERQAHLQ 428

[Close]

BLAST of Carg19657 vs. Swiss-Prot
Match: sp|P42731|PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PAB2 PE=1 SV=1)

HSP 1 Score: 582.8 bits (1501), Expect = 2.9e-165
Identity = 289/403 (71.71%), Postives = 346/403 (85.86%), Query Frame = 0


Query: 3   AQVQSQ---PQNAISGIN--PAANGGA---NFVTTSLYVGDLDLNVTDSQLYDIFNQVGQ 62
           AQVQ Q   P  + + +   PA +GGA    F  TSLYVGDLD NVTDSQL+D F Q+G 
Sbjct: 2   AQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGT 61

Query: 63  VVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKS 122
           VV+VRVCRDL TRRSLGYGYVN++NPQDAARA+  LN+ PL GKPIRVMYSHRDPS+R+S
Sbjct: 62  VVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRS 121

Query: 123 GAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAI 182
           GAGNIFIKNLD++IDHKALHDTFS+FG+I+SCKVA+DSSGQSKGYGFVQ+ NEES QKAI
Sbjct: 122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAI 181

Query: 183 EKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTI 242
           EKLNGMLLNDKQVYVGPFLR+QERD   +K+KF NV+VKN +E+T++++L + F E+G I
Sbjct: 182 EKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKI 241

Query: 243 TSIVVMRDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELK 302
           TS VVM+D +GKSK FGFVNFE+ADDAARAV++LNG   DDKEWYVG+AQKKSERE EL+
Sbjct: 242 TSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELR 301

Query: 303 NRFEQTMKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSG 362
            R+EQ +KEAADK+Q +NLY+KNLD SI D+KLKE+F+ FGT+TS KVMRDPNG S+GSG
Sbjct: 302 VRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSG 361

Query: 363 FVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           FVAF+TPEEA+ A+ +++GKM+ SKPLYVA+AQRKEDRR RLQ
Sbjct: 362 FVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQ 404

[Close]

BLAST of Carg19657 vs. Swiss-Prot
Match: sp|Q9FXA2|PABP8_ARATH (Polyadenylate-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=PAB8 PE=1 SV=1)

HSP 1 Score: 580.9 bits (1496), Expect = 1.1e-164
Identity = 286/369 (77.51%), Postives = 327/369 (88.62%), Query Frame = 0


Query: 29  TSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 88
           TSLYVGDLD  VTDSQL++ F Q GQVVSVRVCRD+TTRRSLGYGYVNY+ PQDA+RAL+
Sbjct: 45  TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104

Query: 89  VLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKV 148
            LNF  LNG+ IRVMYS RDPS+RKSG GNIFIKNLDK+IDHKALH+TFSAFG ILSCKV
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164

Query: 149 ALDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFN 208
           A+D SGQSKGYGFVQ+D +E+ Q AI+KLNGMLLNDKQVYVGPF+ K +RD   +K KF 
Sbjct: 165 AVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFT 224

Query: 209 NVFVKNFSETTSEEELNDVFSEFGTITSIVVMRDADGKSKCFGFVNFESADDAARAVDAL 268
           NV+VKN SE+ S+EELN VF EFG  TS V+MRD +GKSK FGFVNFE++DDAARAVDAL
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284

Query: 269 NGKLVDDKEWYVGKAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSIVDDKLK 328
           NGK  DDKEW+VGKAQKKSERE ELK +FEQ++KEAADK QG+NLY+KNLD+S+ DDKL+
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344

Query: 329 ELFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQR 388
           E FA FGTITSCKVMRDP+G+SRGSGFVAFSTPEEA+RA+ EMNGKM+V+KPLYVALAQR
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQR 404

Query: 389 KEDRRARLQ 398
           KEDR+ARLQ
Sbjct: 405 KEDRKARLQ 413

[Close]

BLAST of Carg19657 vs. Swiss-Prot
Match: sp|O22173|PABP4_ARATH (Polyadenylate-binding protein 4 OS=Arabidopsis thaliana OX=3702 GN=PAB4 PE=1 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 1.6e-147
Identity = 253/368 (68.75%), Postives = 302/368 (82.07%), Query Frame = 0


Query: 30  SLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 89
           SLYVGDLD NVTDSQLYD F +V QVVSVRVCRD  T  SLGYGYVNYSN  DA +A+  
Sbjct: 47  SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106

Query: 90  LNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVA 149
           LN++ LNGK IR+ YS RD S R+SG GN+F+KNLDK++D+K LH+ FS  G+I+SCKVA
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166

Query: 150 LDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNN 209
            D  GQS+GYGFVQFD E+S + AIEKLNG +LNDKQ++VGPFLRK+ER+   DK KF N
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTN 226

Query: 210 VFVKNFSETTSEEELNDVFSEFGTITSIVVMRDADGKSKCFGFVNFESADDAARAVDALN 269
           V+VKN SE T+++EL   F ++G+I+S VVMRD DGKS+CFGFVNFE+ +DAARAV+ALN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286

Query: 270 GKLVDDKEWYVGKAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSIVDDKLKE 329
           GK  DDKEWYVGKAQKKSERE+EL  R+EQ   +  +K+ G NLY+KNLDD++ D+KL+E
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346

Query: 330 LFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRK 389
           LFA FGTITSCKVMRDP+G S+GSGFVAFS   EASR L EMNGKMV  KPLYVALAQRK
Sbjct: 347 LFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRK 406

Query: 390 EDRRARLQ 398
           E+RRA+LQ
Sbjct: 407 EERRAKLQ 414

[Close]

BLAST of Carg19657 vs. Swiss-Prot
Match: sp|O64380|PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PAB3 PE=2 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 3.7e-128
Identity = 238/397 (59.95%), Postives = 294/397 (74.06%), Query Frame = 0


Query: 3   AQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCR 62
           AQ   Q   +I   +P          +SLY GDLD  VT++ L+D+F  V  VVSVRVCR
Sbjct: 23  AQTSVQVPVSIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCR 82

Query: 63  DLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIK 122
           D   RRSLGY Y+N+SNP DA RA++ LN+TPL  +PIR+M S+RDPS R SG GNIFIK
Sbjct: 83  D-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIK 142

Query: 123 NLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLL 182
           NLD +ID+KAL +TFS+FG+ILSCKVA+D +G+SKGYGFVQF+ EES Q AI+KLNGML+
Sbjct: 143 NLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLM 202

Query: 183 NDKQVYVGPFLRKQE--RDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 242
           NDKQV+VG F+R+QE  RD      +F NV+VKN  +   E+EL   F +FG I+S VVM
Sbjct: 203 NDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVM 262

Query: 243 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 302
           RD  G S+CFGFVNFE  + AA AV+ +NG  + D   YVG+AQKKSERE EL+ +FEQ 
Sbjct: 263 RDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQE 322

Query: 303 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 362
                +K QGANLY+KNLDDS+ D+KLKE+F+ +G +TS KVM +P G+SRG GFVA+S 
Sbjct: 323 RINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSN 382

Query: 363 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           PEEA RAL EMNGKM+  KPLY+ALAQRKEDRRA LQ
Sbjct: 383 PEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQ 418

[Close]

BLAST of Carg19657 vs. Swiss-Prot
Match: sp|P61286|PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus OX=9913 GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 2.3e-122
Identity = 219/383 (57.18%), Postives = 294/383 (76.76%), Query Frame = 0


Query: 16  INPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYV 75
           +NP+A    ++   SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRRSLGY YV
Sbjct: 1   MNPSA---PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYV 60

Query: 76  NYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHD 135
           N+  P DA RALD +NF  + GKP+R+M+S RDPS+RKSG GNIFIKNLDK+ID+KAL+D
Sbjct: 61  NFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 120

Query: 136 TFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLLNDKQVYVGPFLRK 195
           TFSAFG+ILSCKV  D +G SKGYGFV F+ +E+ ++AIEK+NGMLLND++V+VG F  +
Sbjct: 121 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 180

Query: 196 QERDGVVD--KSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVMRDADGKSKCFGFV 255
           +ER+  +     +F NV++KNF E   +E L D+F +FG   S+ VM D  GKSK FGFV
Sbjct: 181 KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFV 240

Query: 256 NFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQTMKEAADKYQGANL 315
           +FE  +DA +AVD +NGK ++ K+ YVG+AQKK ER+ ELK +FEQ  ++   +YQG NL
Sbjct: 241 SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNL 300

Query: 316 YIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNG 375
           Y+KNLDD I D++L++ F+ FGTITS KVM +  G S+G GFV FS+PEEA++A+ EMNG
Sbjct: 301 YVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNG 360

Query: 376 KMVVSKPLYVALAQRKEDRRARL 397
           ++V +KPLYVALAQRKE+R+A L
Sbjct: 361 RIVATKPLYVALAQRKEERQAHL 378

[Close]

BLAST of Carg19657 vs. TrEMBL
Match: tr|A0A1S3C385|A0A1S3C385_CUCME (Polyadenylate-binding protein OS=Cucumis melo OX=3656 GN=LOC103496171 PE=3 SV=1)

HSP 1 Score: 753.4 bits (1944), Expect = 2.5e-214
Identity = 382/397 (96.22%), Postives = 391/397 (98.49%), Query Frame = 0


Query: 1   MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MAAQVQ+QPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEES QKAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKN SETT+EE+LN  FSEFGT+TSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 300
           RDADGKS+CFGFVNFE+ADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELK+RFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSI DDKLKELFA FGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           P+EASRAL+EMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]

BLAST of Carg19657 vs. TrEMBL
Match: tr|A0A0A0L989|A0A0A0L989_CUCSA (Polyadenylate-binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G202720 PE=3 SV=1)

HSP 1 Score: 747.7 bits (1929), Expect = 1.4e-212
Identity = 379/397 (95.47%), Postives = 388/397 (97.73%), Query Frame = 0


Query: 1   MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MA QVQ+QPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEES  KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKN SETT+EE+LN  FSEFGT+TSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 300
           RDADGKS+CFGFVNFE+ADDAARAVD LNGKLVDDKEWYVGKAQKKSEREVELK+RFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSI DDKLKELFA FGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           P+EASRAL+EMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]

BLAST of Carg19657 vs. TrEMBL
Match: tr|W9RY32|W9RY32_9ROSA (Polyadenylate-binding protein OS=Morus notabilis OX=981085 GN=L484_027495 PE=3 SV=1)

HSP 1 Score: 685.3 bits (1767), Expect = 8.4e-194
Identity = 347/397 (87.41%), Postives = 369/397 (92.95%), Query Frame = 0


Query: 3   AQVQSQPQNAISGINP-AANGGAN-FVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 62
           AQVQ QPQNAI G N  AANGGAN FVTTSLYVGDLD NVTDSQLYD+FNQ+GQVVSVRV
Sbjct: 2   AQVQVQPQNAIPGGNAGAANGGANQFVTTSLYVGDLDQNVTDSQLYDLFNQLGQVVSVRV 61

Query: 63  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 122
           CRDLTTRRSLGYGYVNYSNPQDAARALD+LNFTPLNGKPIR+MYSHRDPSIRKSGAGNIF
Sbjct: 62  CRDLTTRRSLGYGYVNYSNPQDAARALDMLNFTPLNGKPIRIMYSHRDPSIRKSGAGNIF 121

Query: 123 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 182
           IKNLDK IDHKALHDTFSAFG+ILSCKVA D SGQSKGYGFVQFD EE+ QKAI++LNGM
Sbjct: 122 IKNLDKGIDHKALHDTFSAFGNILSCKVATDQSGQSKGYGFVQFDTEEAAQKAIKELNGM 181

Query: 183 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 242
           LLNDKQV+VGPFLRKQER+  +DKSKFNNVFVKN SE T+EE+L   F EFG +TS+ VM
Sbjct: 182 LLNDKQVFVGPFLRKQERESAIDKSKFNNVFVKNLSELTTEEDLGRTFGEFGELTSVAVM 241

Query: 243 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 302
           RDADGKS+CFGFVNFE+ADDAARAV++LNGK  DDKEWYVGKAQKKSEREVELK RFEQ+
Sbjct: 242 RDADGKSRCFGFVNFENADDAARAVESLNGKKFDDKEWYVGKAQKKSEREVELKTRFEQS 301

Query: 303 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 362
           MKEAADKYQGANLYIKNLDDSI DDKLKELF  FGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 302 MKEAADKYQGANLYIKNLDDSISDDKLKELFYQFGTITSCKVMRDPNGISRGSGFVAFST 361

Query: 363 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           PEEASRAL+EMNGKM+VSKPLYVALAQRKEDRRARLQ
Sbjct: 362 PEEASRALVEMNGKMIVSKPLYVALAQRKEDRRARLQ 398

[Close]

BLAST of Carg19657 vs. TrEMBL
Match: tr|A0A2P4MZV2|A0A2P4MZV2_QUESU (Polyadenylate-binding protein OS=Quercus suber OX=58331 GN=CFP56_15530 PE=3 SV=1)

HSP 1 Score: 684.5 bits (1765), Expect = 1.4e-193
Identity = 346/396 (87.37%), Postives = 373/396 (94.19%), Query Frame = 0


Query: 3   AQVQSQPQNAISGINPAANGGAN-FVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVC 62
           AQVQ+ PQNAI G N A  GGAN FVTTSLYVGDL+ NVTDSQLYD+FNQ+GQVVSVRVC
Sbjct: 2   AQVQAPPQNAIPGANGA--GGANQFVTTSLYVGDLEQNVTDSQLYDLFNQLGQVVSVRVC 61

Query: 63  RDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFI 122
           RDL+TRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIR+MYSHRDPSIRKSGAGNIFI
Sbjct: 62  RDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRIMYSHRDPSIRKSGAGNIFI 121

Query: 123 KNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGML 182
           KNLDKAIDHKALHDTFSAFG+ILSCKVA DSSGQSKGYGFVQFDN+E+ QKAIEKLNGML
Sbjct: 122 KNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNDEAAQKAIEKLNGML 181

Query: 183 LNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVMR 242
           LNDKQV+VGPFLRKQER+   DK++FNNVFVKN SE T+EE+L+ +F EFGT+TS VVMR
Sbjct: 182 LNDKQVFVGPFLRKQERETASDKTRFNNVFVKNLSELTTEEDLSRIFGEFGTLTSFVVMR 241

Query: 243 DADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQTM 302
           DADGKSKCFGF+NFE+ADDAARAV++LNG+ VDDKEWYVGKAQKKSEREVELK RFEQ+M
Sbjct: 242 DADGKSKCFGFINFENADDAARAVESLNGRKVDDKEWYVGKAQKKSEREVELKLRFEQSM 301

Query: 303 KEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFSTP 362
           KEAADKYQGANLY+KNLDDSI DDKLKELF+ FG+ITSCKVMRDPNGISRGSGFVAFSTP
Sbjct: 302 KEAADKYQGANLYVKNLDDSIGDDKLKELFSQFGSITSCKVMRDPNGISRGSGFVAFSTP 361

Query: 363 EEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           EEASRAL EMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 362 EEASRALSEMNGKMVVSKPLYVALAQRKEDRRARLQ 395

[Close]

BLAST of Carg19657 vs. TrEMBL
Match: tr|A0A0L9VAK7|A0A0L9VAK7_PHAAN (Polyadenylate-binding protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g069200 PE=3 SV=1)

HSP 1 Score: 681.8 bits (1758), Expect = 9.3e-193
Identity = 344/397 (86.65%), Postives = 367/397 (92.44%), Query Frame = 0


Query: 3   AQVQSQPQNAISGIN--PAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 62
           AQVQ QPQNA+ G N   AA GG  FVTTSLYVGDLD NVTDSQLYD+F+Q+GQVVSVRV
Sbjct: 2   AQVQVQPQNAMPGPNGAAAAAGGNQFVTTSLYVGDLDPNVTDSQLYDLFSQLGQVVSVRV 61

Query: 63  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 122
           CRDLT+RRSLGYGYVNYSNPQDAARALDVLNFTPLN KPIR+MYSHRDPSIRKSGAGNIF
Sbjct: 62  CRDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIF 121

Query: 123 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 182
           IKNLD+AIDHKALHDTFS FG+ILSCKVA DSSGQSKGYGFVQFDNEES QKAIEKLNGM
Sbjct: 122 IKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGM 181

Query: 183 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 242
           LLNDKQVYVGPFLRKQER+  +DK+KFNNVFVKN +++TS++EL  +F EFGTITS VVM
Sbjct: 182 LLNDKQVYVGPFLRKQERETAIDKAKFNNVFVKNLADSTSDDELKTIFGEFGTITSAVVM 241

Query: 243 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 302
           RD DGKSKCFGFVNFE+ADDAARAV+ALNGK  DDKEWYVGKAQKKSERE ELK RFEQ+
Sbjct: 242 RDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQS 301

Query: 303 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 362
           MKEAADKYQGANLY+KNLDDSI DDKLKELF+ FGTITSCKVMRDPNG+SRGSGFVAFST
Sbjct: 302 MKEAADKYQGANLYVKNLDDSISDDKLKELFSPFGTITSCKVMRDPNGVSRGSGFVAFST 361

Query: 363 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           PEEASRAL EMNGKMVVSKPLYV LAQRKEDRRARLQ
Sbjct: 362 PEEASRALSEMNGKMVVSKPLYVTLAQRKEDRRARLQ 398

The following BLAST results are available for this feature:

BLAST of Carg19657 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552256.1	7.2e-221	99.75	polyadenylate-binding protein 8-like [Cucurbita pepo subsp. pepo]	[more]
XP_022922698.1	3.5e-220	99.50	polyadenylate-binding protein 8-like [Cucurbita moschata]	[more]
XP_022984704.1	4.6e-220	99.24	polyadenylate-binding protein 8-like [Cucurbita maxima]	[more]
XP_008456142.1	3.8e-214	96.22	PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo]	[more]
XP_004140705.1	2.1e-212	95.47	PREDICTED: polyadenylate-binding protein 8-like [Cucumis sativus] >KGN57514.1 hy...	[more]

BLAST of Carg19657 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34110.1	1.6e-166	71.71	poly(A) binding protein 2	[more]
AT1G49760.1	6.1e-166	77.51	poly(A) binding protein 8	[more]
AT2G23350.1	8.9e-149	68.75	poly(A) binding protein 4	[more]
AT1G22760.1	2.1e-129	59.95	poly(A) binding protein 3	[more]
AT1G71770.1	6.4e-123	59.25	poly(A)-binding protein 5	[more]

BLAST of Carg19657 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P42731\|PABP2_ARATH	2.9e-165	71.71	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PAB2 PE=1 SV=...	[more]
sp\|Q9FXA2\|PABP8_ARATH	1.1e-164	77.51	Polyadenylate-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=PAB8 PE=1 SV=...	[more]
sp\|O22173\|PABP4_ARATH	1.6e-147	68.75	Polyadenylate-binding protein 4 OS=Arabidopsis thaliana OX=3702 GN=PAB4 PE=1 SV=...	[more]
sp\|O64380\|PABP3_ARATH	3.7e-128	59.95	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PAB3 PE=2 SV=...	[more]
sp\|P61286\|PABP1_BOVIN	2.3e-122	57.18	Polyadenylate-binding protein 1 OS=Bos taurus OX=9913 GN=PABPC1 PE=2 SV=1	[more]

BLAST of Carg19657 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C385\|A0A1S3C385_CUCME	2.5e-214	96.22	Polyadenylate-binding protein OS=Cucumis melo OX=3656 GN=LOC103496171 PE=3 SV=1	[more]
tr\|A0A0A0L989\|A0A0A0L989_CUCSA	1.4e-212	95.47	Polyadenylate-binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G202720 PE=3 SV...	[more]
tr\|W9RY32\|W9RY32_9ROSA	8.4e-194	87.41	Polyadenylate-binding protein OS=Morus notabilis OX=981085 GN=L484_027495 PE=3 S...	[more]
tr\|A0A2P4MZV2\|A0A2P4MZV2_QUESU	1.4e-193	87.37	Polyadenylate-binding protein OS=Quercus suber OX=58331 GN=CFP56_15530 PE=3 SV=1	[more]
tr\|A0A0L9VAK7\|A0A0L9VAK7_PHAAN	9.3e-193	86.65	Polyadenylate-binding protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g069...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR006515	PABP_1234
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR003954	RRM_dom_euk

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19657-RA	Carg19657-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 30..103 e-value: 4.4 score: 7.5 coord: 118..190 e-value: 2.5 score: 10.1 coord: 209..281 e-value: 0.26 score: 20.1 coord: 312..384 e-value: 1.2 score: 13.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 30..103 e-value: 4.2E-24 score: 96.1 coord: 209..281 e-value: 1.4E-27 score: 107.7 coord: 118..190 e-value: 1.7E-23 score: 94.1 coord: 312..384 e-value: 1.4E-24 score: 97.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 31..101 e-value: 4.1E-19 score: 68.1 coord: 313..381 e-value: 4.5E-18 score: 64.7 coord: 119..187 e-value: 3.3E-20 score: 71.6 coord: 210..278 e-value: 1.8E-23 score: 82.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 208..285 score: 19.297
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 117..189 score: 18.103
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 311..388 score: 19.144
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 29..107 score: 18.734
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 1..118 e-value: 4.3E-26 score: 93.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 198..293 e-value: 3.2E-26 score: 94.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 119..197 e-value: 4.2E-22 score: 79.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 294..395 e-value: 2.6E-26 score: 93.9
IPR006515	Polyadenylate binding protein, human types 1, 2, 3, 4	TIGRFAM	TIGR01628	TIGR01628	coord: 30..397 e-value: 6.7E-180 score: 598.1
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 17..397
None	No IPR available	PANTHER	PTHR24012:SF349	POLYADENYLATE-BINDING PROTEIN 2-RELATED	coord: 17..397
None	No IPR available	CDD	cd12378	RRM1_I_PABPs	coord: 30..109 e-value: 4.61703E-46 score: 153.844
None	No IPR available	CDD	cd12379	RRM2_I_PABPs	coord: 115..191 e-value: 5.05312E-47 score: 156.172
None	No IPR available	CDD	cd12381	RRM4_I_PABPs	coord: 310..388 e-value: 4.21873E-47 score: 156.626
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 29..198
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 208..392

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19657	Cla013083	Watermelon (97103) v1	carwmB0288
Carg19657	Cla016024	Watermelon (97103) v1	carwmB0289
Carg19657	Csa3G202720	Cucumber (Chinese Long) v2	carcuB0320
Carg19657	Csa7G073530	Cucumber (Chinese Long) v2	carcuB0323
Carg19657	MELO3C019525	Melon (DHL92) v3.5.1	carmeB0296
Carg19657	MELO3C018462	Melon (DHL92) v3.5.1	carmeB0295
Carg19657	ClCG02G006080	Watermelon (Charleston Gray)	carwcgB0288
Carg19657	ClCG05G010160	Watermelon (Charleston Gray)	carwcgB0289
Carg19657	CSPI03G18310	Wild cucumber (PI 183967)	carcpiB0326
Carg19657	CSPI07G07510	Wild cucumber (PI 183967)	carcpiB0329
Carg19657	Cucsa.219740	Cucumber (Gy14) v1	carcgyB0344
Carg19657	Cucsa.244510	Cucumber (Gy14) v1	carcgyB0345
Carg19657	CmaCh04G004810	Cucurbita maxima (Rimu)	carcmaB0408
Carg19657	CmaCh16G003510	Cucurbita maxima (Rimu)	carcmaB0406
Carg19657	CmaCh11G017390	Cucurbita maxima (Rimu)	carcmaB0405
Carg19657	CmaCh19G005960	Cucurbita maxima (Rimu)	carcmaB0407
Carg19657	CmoCh11G013760	Cucurbita moschata (Rifu)	carcmoB0401
Carg19657	CmoCh04G005160	Cucurbita moschata (Rifu)	carcmoB0403
Carg19657	CmoCh16G003750	Cucurbita moschata (Rifu)	carcmoB0402
Carg19657	Lsi03G005050	Bottle gourd (USVL1VR-Ls)	carlsiB267
Carg19657	Lsi05G002260	Bottle gourd (USVL1VR-Ls)	carlsiB270
Carg19657	Cp4.1LG01g02470	Cucurbita pepo (Zucchini)	carcpeB0408
Carg19657	Cp4.1LG14g04280	Cucurbita pepo (Zucchini)	carcpeB0407
Carg19657	Cp4.1LG04g07920	Cucurbita pepo (Zucchini)	carcpeB0409
Carg19657	CsGy3G018160	Cucumber (Gy14) v2	carcgybB0307
Carg19657	MELO3C019525.2	Melon (DHL92) v3.6.1	carmedB0307
Carg19657	MELO3C018462.2	Melon (DHL92) v3.6.1	carmedB0306
Carg19657	CsaV3_7G008460	Cucumber (Chinese Long) v3	carcucB0329
Carg19657	CsaV3_3G018370	Cucumber (Chinese Long) v3	carcucB0326
Carg19657	Cla97C02G033030	Watermelon (97103) v2	carwmbB0303
Carg19657	Cla97C05G092550	Watermelon (97103) v2	carwmbB0304
Carg19657	Bhi01G001268	Wax gourd	carwgoB0382

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19657	Carg08150	Silver-seed gourd	carcarB324

The following block(s) are covering this gene:

None