Carg19621 (gene) Silver-seed gourd

NameCarg19621
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_117 : 284843 .. 286800 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACGGTAATCAATCTCTTCTCTTCTTCTCCTTCAATCTCATCTCTTCCTCTCAAAATCCTTACTATCTATCGAAATACAGATGCAATATCTCCACTATTCCCCTCCATTCTGCTCACAGTTCCATCTCCGTTCCGCCGTGCTGTTCTTCCAGAGGCTCCTCAACGGTGGCTCTCGTCGCCGATCGATCATAGGACGGCGTGAACAGAGAGGCGTCGGAGGAGGTATTGGAAAAGACTCCTTCATTTGGCAGGTTTAGGGCTCCGATTTATTAACATGCATCTAATATCATCTCACCGATTTATGGTTTGAAATCATGCTCATATTAACATGCTAAAATACATATTCAAAGTTGTATGATCAATTTGTTAAAAGCTAAGTAAAAGGTTAGGAACAAAATAGTTATAATTTTCAAGTTTAAGGACTAAAATAAGATAGAACTGAGAGTTCAAGTACGAAAATGAACATTCTAAAAGTTCTGAGATAAAAAATGGAGCGAGAACTAAAAATGAGATTTGAACCAAAAACAGTACCATACAGAACCATAGTTTAAAGTTCAAGAATCTTTACTCAGGCTTGGAGTCGAAATATTACTTACTTGGATTGCTTTACTTCATATAGATCGTCTCTAAACATAAATTCTCAGAGTTACGTAACATGGATGGCATGGGCAGCATTGGAACAGGATCAAGGGAATGCAATCCGAGTCGAGGAAATTTGAAATCTCTATTTCCAGCAGGTCAGAACCTCAGTTACATTACATCAACTCAAACTGTAATTTTAACTTGATCACTTCTTGATATTGAAATGGCTGCTTGACTTTTGAAGCTTTTGAACAAGTGATGCTGATTATGATTATAAGCTTTTGAAATTTGAGTTTGTTATGTGGATAAGAAAGTGAAGGTTGTTTTGCAACAGTGAACTGAAGTTGTGGATGATGCTTCGTGGATTATGGGATTGTTAGAGGTTATTGATCCAGCACTAGCAGCAAAAAGAGACGAACTGTGATGCTGGAGCAAGAACCATTCACCACGTCTTGAACAGCAGATGGAGGCACTCGAAACGCCTGCATAGACGACTCGACTGCCTCCTCTACTGGTAACAATGTGGTTTAAACTGAAACTGAAACTGAGTTTGTTTCAACTATCAAAGTTGGATGTTTAACAGAGCCAAACAACAGAATCATCCAAATCATCCAGCACAAGCCCTCACGGTTTTAAAATGCGTATACTAGGGAGAGGTTTTCAGACCCATATAAGGAATGTTTCGTTCCCCTCTCCAACCGATGTGGATCTCACAATCCACCCTTGGGGGCCTAGCGTCCTCACTGCCACACTGCCCGTTGTCTGGCTTTGATACCATTTGTAACAGCTCAAGCCCACCGCTAGTAAACATTGTCCGTTTTGACCCGTTATGTATCATTGTCAGCCTCGTGATTTTAAACCGCGTCTGATAGGGAGAGGTTTTCCCACCCTTATAAGGAATGCTTCGTTTCCCCTCCAACCGACGTGAGATCTCACATCTTCCGGATAGTTTCCAGATTGTGAAGGATACAAGTCAGTTTTAATGAACTATCTGGTAAGAATTTCTTCAAAAGTACGATCACAGAAAGTTCAAACAATTTTGTGCCAGTGTATCAAATCCATTTCAGGAGCTTTTAATTATTGTTTAGTTTCACTTCTCAACCTCTACTTGCAATTTTTAACGAGTTATAATCATCTTGTTTTACGAACTATTTAAACTTGGTCTTTACCATTAATTTTGCTGTCAGCATCTTGAACAGAAGATTGATGTAGAAAAAGGAGCAAAACCAGGTATGAATAGATATTGAAATCTAGAAGTCTCTGGGGTCAACAATCACATTTGCAGCTGCTTCCATATCCTTTGACAACAACATTTCATCCCTTTCATCATCACTACTCTGTACACTCAATCTTTTCAGGTACCAGTTATCGTTGA

mRNA sequence

AGACGGTAATCAATCTCTTCTCTTCTTCTCCTTCAATCTCATCTCTTCCTCTCAAAATCCTTACTATCTATCGAAATACAGATGCAATATCTCCACTATTCCCCTCCATTCTGCTCACAGTTCCATCTCCGTTCCGCCGTGCTGTTCTTCCAGAGGCTCCTCAACGGTGGCTCTCGTCGCCGATCGATCATAGGACGGCGTGAACAGAGAGGCGTCGGAGGAGAGTTACGTAACATGGATGGCATGGGCAGCATTGGAACAGGATCAAGGGAATGCAATCCGAGTCGAGGAAATTTGAAATCTCTATTTCCAGCAGATGGAGGCACTCGAAACGCCTGCATAGACGACTCGACTGCCTCCTCTACTGGTAACAATGTGCATCTTGAACAGAAGATTGATGTAGAAAAAGGAGCAAAACCAGGTACCAGTTATCGTTGA

Coding sequence (CDS)

ATGCAATATCTCCACTATTCCCCTCCATTCTGCTCACAGTTCCATCTCCGTTCCGCCGTGCTGTTCTTCCAGAGGCTCCTCAACGGTGGCTCTCGTCGCCGATCGATCATAGGACGGCGTGAACAGAGAGGCGTCGGAGGAGAGTTACGTAACATGGATGGCATGGGCAGCATTGGAACAGGATCAAGGGAATGCAATCCGAGTCGAGGAAATTTGAAATCTCTATTTCCAGCAGATGGAGGCACTCGAAACGCCTGCATAGACGACTCGACTGCCTCCTCTACTGGTAACAATGTGCATCTTGAACAGAAGATTGATGTAGAAAAAGGAGCAAAACCAGGTACCAGTTATCGTTGA

Protein sequence

MQYLHYSPPFCSQFHLRSAVLFFQRLLNGGSRRRSIIGRREQRGVGGELRNMDGMGSIGTGSRECNPSRGNLKSLFPADGGTRNACIDDSTASSTGNNVHLEQKIDVEKGAKPGTSYR
BLAST of Carg19621 vs. NCBI nr
Match: XP_022956248.1 (uncharacterized protein LOC111458000 [Cucurbita moschata])

HSP 1 Score: 122.5 bits (306), Expect = 9.7e-25
Identity = 67/89 (75.28%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 8   PPFCSQFHLRSAVLFFQRLLNGGSRRRSIIGRREQRGVGG------------------EL 67
           P    QFHLRSAVLFFQRLLNGGSRRRSIIGRREQRGVGG                  EL
Sbjct: 52  PSILLQFHLRSAVLFFQRLLNGGSRRRSIIGRREQRGVGGGIGKDSFIWQIVSKHKFSEL 111

Query: 68  RNMDGMGSIGTGSRECNPSRGNLKSLFPA 79
           RNMDGMGSIGTGSRECNPSRGNLKSLFPA
Sbjct: 112 RNMDGMGSIGTGSRECNPSRGNLKSLFPA 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022956248.19.7e-2575.28uncharacterized protein LOC111458000 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19621-RACarg19621-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..118

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19621Cp4.1LG03g11820Cucurbita pepo (Zucchini)carcpeB0395
The following gene(s) are paralogous to this gene:

None