Carg19528 (gene) Silver-seed gourd

Overview
NameCarg19528
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_104 : 258477 .. 258991 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGCCAGCTGAAGGAGAAGATGGACCAAGGCGACTCTGTGGAGAACAGACAACCGCGAGGGCACAGCTGAATCTTCAACTACAGCAAATCATCCCTCCTTCATTGCTCTGCTCCGGCGATTTCTCTGATGCTCCGATTTGGATTCGAGGTCTCAAAACTATTCTCACCAGTGGACTTAATCCCGGTTCAGTCACGTCATCCAGAGATGATGTCTCAGAAACTTATCGCCGCCTCTTCTCCGTTAGTACTATTCTCAACGTCCATTCTTCTTATCCATCTTAGTTGTTCCTGTTAGTTTGTTCAAATTTCCTTTCTCTGATTACCTATTGAGTTGTTCTTCGTAGCGGGAGCTGAATTTGGTTCTGTTTGTAGCTTAATTCCGTCGCTTATTTGTATGATTTCTTAGGGTTCTTTTTTTTAAATTTTTTTTTGGTTGAAATGTTGCAGATGCCAAGTTGTTCTGTTGGATTGTAACTCTAAAGGATCGAACTCGTTTCTGGTTCCTCGCAATCTGA

mRNA sequence

ACGCCAGCTGAAGGAGAAGATGGACCAAGGCGACTCTGTGGAGAACAGACAACCGCGAGGGCACAGCTGAATCTTCAACTACAGCAAATCATCCCTCCTTCATTGCTCTGCTCCGGCGATTTCTCTGATGCTCCGATTTGGATTCGAGGTCTCAAAACTATTCTCACCAGTGGACTTAATCCCGGTTCAGTCACGTCATCCAGAGATGATGTCTCAGAAACTTATCGCCGCCTCTTCTCCGTTAGTACTATTCTCAACGTCCATTCTTCTTATCCATCTTAATGCCAAGTTGTTCTGTTGGATTGTAACTCTAAAGGATCGAACTCGTTTCTGGTTCCTCGCAATCTGA

Coding sequence (CDS)

ATGCTCCGATTTGGATTCGAGGTCTCAAAACTATTCTCACCAGTGGACTTAATCCCGGTTCAGTCACGTCATCCAGAGATGATGTCTCAGAAACTTATCGCCGCCTCTTCTCCGTTAGTACTATTCTCAACGTCCATTCTTCTTATCCATCTTAATGCCAAGTTGTTCTGTTGGATTGTAACTCTAAAGGATCGAACTCGTTTCTGGTTCCTCGCAATCTGA

Protein sequence

MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAKLFCWIVTLKDRTRFWFLAI
Homology
[Close]
BLAST of Carg19528 vs. NCBI nr
Match: XP_022949609.1 (acetyltransferase NSI-like [Cucurbita moschata])

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAK 55
          MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSP       ++L+  N+K
Sbjct: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSP-----CQVVLLDCNSK 49

[Close]
BLAST of Carg19528 vs. NCBI nr
Match: XP_022978261.1 (acetyltransferase NSI-like [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 6.5e-11
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSPLVLFSTSILLIHLNAK 55
          MLRFGFEVSKLFSPVDLIPVQSR+PEMMSQKLIAASSP       ++L+  N+K
Sbjct: 1  MLRFGFEVSKLFSPVDLIPVQSRYPEMMSQKLIAASSP-----CQVVLLDCNSK 49

[Close]
BLAST of Carg19528 vs. NCBI nr
Match: XP_023543151.1 (acetyltransferase NSI-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 1  MLRFGFEVSKLFSPVDLIPVQSRHPEMMSQKLIAASSP 39
          MLRFGFEVSKLFSPVDLIPVQSR+PEMMSQKLIAASSP
Sbjct: 1  MLRFGFEVSKLFSPVDLIPVQSRYPEMMSQKLIAASSP 38

The following BLAST results are available for this feature:
BLAST of Carg19528 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949609.11.3e-1175.93acetyltransferase NSI-like [Cucurbita moschata][more]
XP_022978261.16.5e-1174.07acetyltransferase NSI-like [Cucurbita maxima][more]
XP_023543151.11.1e-1097.37acetyltransferase NSI-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg19528 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg19528 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg19528 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19528-RACarg19528-RAmRNA