Carg19519 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19519
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Phospholipid-transporting ATPase
Location	Cucurbita_argyrosperma_scaffold_104 : 198669 .. 198884 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTGATCAGCCCCTGCTGGCTTCATCAGAATCCCCATCTCAAAATCGTGGTTCCTTTGGTTGTCTATGTCGCAGTGCTTCTTTTACCTCTTCCAGTTACGACGATTCTCAGAATGACATTGTGGATGTGAAGGAAAACTGCGTCAGCCCTTTTGGAGATAACACTTGGAGTAGTGAGAATTGTCTCAAGAAGTTCCACTTCGCTATCTAG

mRNA sequence

ATGACATCTGATCAGCCCCTGCTGGCTTCATCAGAATCCCCATCTCAAAATCGTGGTTCCTTTGGTTGTCTATGTCGCAGTGCTTCTTTTACCTCTTCCAGTTACGACGATTCTCAGAATGACATTGTGGATGTGAAGGAAAACTGCGTCAGCCCTTTTGGAGATAACACTTGGAGTAGTGAGAATTGTCTCAAGAAGTTCCACTTCGCTATCTAG

Coding sequence (CDS)

ATGACATCTGATCAGCCCCTGCTGGCTTCATCAGAATCCCCATCTCAAAATCGTGGTTCCTTTGGTTGTCTATGTCGCAGTGCTTCTTTTACCTCTTCCAGTTACGACGATTCTCAGAATGACATTGTGGATGTGAAGGAAAACTGCGTCAGCCCTTTTGGAGATAACACTTGGAGTAGTGAGAATTGTCTCAAGAAGTTCCACTTCGCTATCTAG

Protein sequence

MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSPFGDNTWSSENCLKKFHFAI

Homology

[Close]

BLAST of Carg19519 vs. NCBI nr
Match: XP_008463264.1 (PREDICTED: phospholipid-transporting ATPase 1-like [Cucumis melo] >XP_008463265.1 PREDICTED: phospholipid-transporting ATPase 1-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MTSDQPLLASSESP--------SQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSESP        S+NRGS GCLCRSASFTSSSYDD  +DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSVIEYRSKSRNRGSVGCLCRSASFTSSSYDDGHSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WS ENCL++
Sbjct: 61 FGDNAWSGENCLRR 74

[Close]

BLAST of Carg19519 vs. NCBI nr
Match: XP_004142731.1 (PREDICTED: phospholipid-transporting ATPase 1-like [Cucumis sativus] >XP_011653723.1 PREDICTED: phospholipid-transporting ATPase 1-like [Cucumis sativus] >XP_011653724.1 PREDICTED: phospholipid-transporting ATPase 1-like [Cucumis sativus] >KGN54453.1 hypothetical protein Csa_4G334150 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MTSDQPLLASSESP--------SQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSESP        S+NRGS GCLCRSASFTSSSYDD+ +DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSVIEYRSQSRNRGSVGCLCRSASFTSSSYDDAHSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WSSE+CL +
Sbjct: 61 FGDNAWSSEDCLSR 74

[Close]

BLAST of Carg19519 vs. NCBI nr
Match: XP_022977371.1 (phospholipid-transporting ATPase 1-like [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 5.3e-18
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENC 50
          MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENC
Sbjct: 1  MTSDQPLLASSESPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENC 49

[Close]

BLAST of Carg19519 vs. NCBI nr
Match: XP_022924932.1 (phospholipid-transporting ATPase 1-like [Cucurbita moschata] >XP_022924933.1 phospholipid-transporting ATPase 1-like [Cucurbita moschata] >XP_022924934.1 phospholipid-transporting ATPase 1-like [Cucurbita moschata] >XP_022924935.1 phospholipid-transporting ATPase 1-like [Cucurbita moschata] >XP_022924936.1 phospholipid-transporting ATPase 1-like [Cucurbita moschata] >XP_022924937.1 phospholipid-transporting ATPase 1-like [Cucurbita moschata])

HSP 1 Score: 83.6 bits (205), Expect = 3.0e-13
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1  MTSDQPLLASSE--------SPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          M++ QPLLASSE        SPS N GS G LCRSASFTSS+++D+Q+D+VDVKENC + 
Sbjct: 1  MSAGQPLLASSESASVIEHRSPSPNFGSAGSLCRSASFTSSTHEDAQSDVVDVKENCAAS 60

Query: 61 FGDNTWSSENCLKK 67
          FGD  WS E+ L++
Sbjct: 61 FGDKDWSVEDSLRR 74

[Close]

BLAST of Carg19519 vs. NCBI nr
Match: XP_023517565.1 (phospholipid-transporting ATPase 1-like [Cucurbita pepo subsp. pepo] >XP_023517566.1 phospholipid-transporting ATPase 1-like [Cucurbita pepo subsp. pepo] >XP_023517567.1 phospholipid-transporting ATPase 1-like [Cucurbita pepo subsp. pepo] >XP_023517568.1 phospholipid-transporting ATPase 1-like [Cucurbita pepo subsp. pepo] >XP_023517569.1 phospholipid-transporting ATPase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.6 bits (205), Expect = 3.0e-13
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 1  MTSDQPLLASSE--------SPSQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          M++ QPLLASSE        SPS N GS G LCRSASFTSS+++D+Q+D+VDVKENC + 
Sbjct: 1  MSAGQPLLASSESASVIEHRSPSPNFGSAGSLCRSASFTSSTHEDAQSDVVDVKENCAAS 60

Query: 61 FGDNTWSSENCLKK 67
          FGD  WS E+ L++
Sbjct: 61 FGDKDWSVEDSLRR 74

[Close]

BLAST of Carg19519 vs. TrEMBL
Match: tr|A0A1S3CIV6|A0A1S3CIV6_CUCME (Phospholipid-transporting ATPase OS=Cucumis melo OX=3656 GN=LOC103501467 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MTSDQPLLASSESP--------SQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSESP        S+NRGS GCLCRSASFTSSSYDD  +DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSVIEYRSKSRNRGSVGCLCRSASFTSSSYDDGHSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WS ENCL++
Sbjct: 61 FGDNAWSGENCLRR 74

[Close]

BLAST of Carg19519 vs. TrEMBL
Match: tr|A0A0A0KY84|A0A0A0KY84_CUCSA (Phospholipid-transporting ATPase OS=Cucumis sativus OX=3659 GN=Csa_4G334150 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.6e-21
Identity = 55/74 (74.32%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MTSDQPLLASSESP--------SQNRGSFGCLCRSASFTSSSYDDSQNDIVDVKENCVSP 60
          MTS QPLLASSESP        S+NRGS GCLCRSASFTSSSYDD+ +DIVDVKENC SP
Sbjct: 1  MTSGQPLLASSESPSVIEYRSQSRNRGSVGCLCRSASFTSSSYDDAHSDIVDVKENCASP 60

Query: 61 FGDNTWSSENCLKK 67
          FGDN WSSE+CL +
Sbjct: 61 FGDNAWSSEDCLSR 74

[Close]

BLAST of Carg19519 vs. TrEMBL
Match: tr|A0A218W2I2|A0A218W2I2_PUNGR (Phospholipid-transporting ATPase OS=Punica granatum OX=22663 GN=CDL15_Pgr000499 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-04
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 1  MTSDQPLLASSESPSQNR----GSFGCLCRSASFTSSSYDDSQNDIVDV 46
          MTS QPLL+SS+S    R    GSFGCLCR AS TSS+ DD+Q ++V+V
Sbjct: 1  MTSGQPLLSSSDSEPPKRIRSIGSFGCLCRDASLTSSNCDDNQTNVVEV 49

The following BLAST results are available for this feature:

BLAST of Carg19519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463264.1	2.3e-21	74.32	PREDICTED: phospholipid-transporting ATPase 1-like [Cucumis melo] >XP_008463265....	[more]
XP_004142731.1	3.9e-21	74.32	PREDICTED: phospholipid-transporting ATPase 1-like [Cucumis sativus] >XP_0116537...	[more]
XP_022977371.1	5.3e-18	100.00	phospholipid-transporting ATPase 1-like [Cucurbita maxima]	[more]
XP_022924932.1	3.0e-13	58.11	phospholipid-transporting ATPase 1-like [Cucurbita moschata] >XP_022924933.1 pho...	[more]
XP_023517565.1	3.0e-13	58.11	phospholipid-transporting ATPase 1-like [Cucurbita pepo subsp. pepo] >XP_0235175...	[more]

BLAST of Carg19519 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg19519 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19519 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIV6\|A0A1S3CIV6_CUCME	1.5e-21	74.32	Phospholipid-transporting ATPase OS=Cucumis melo OX=3656 GN=LOC103501467 PE=3 SV...	[more]
tr\|A0A0A0KY84\|A0A0A0KY84_CUCSA	2.6e-21	74.32	Phospholipid-transporting ATPase OS=Cucumis sativus OX=3659 GN=Csa_4G334150 PE=3...	[more]
tr\|A0A218W2I2\|A0A218W2I2_PUNGR	1.7e-04	59.18	Phospholipid-transporting ATPase OS=Punica granatum OX=22663 GN=CDL15_Pgr000499 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19519-RA	Carg19519-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19519	Silver-seed gourd	carcarB024
Carg19519	Silver-seed gourd	carcarB319
Carg19519	Cucumber (Gy14) v2	carcgybB0626
Carg19519	Cucumber (Gy14) v1	carcgyB0702
Carg19519	Cucurbita maxima (Rimu)	carcmaB0887
Carg19519	Cucurbita maxima (Rimu)	carcmaB0888
Carg19519	Cucurbita moschata (Rifu)	carcmoB0862
Carg19519	Cucurbita moschata (Rifu)	carcmoB0863
Carg19519	Cucurbita moschata (Rifu)	carcmoB0864
Carg19519	Cucurbita pepo (Zucchini)	carcpeB0891
Carg19519	Cucurbita pepo (Zucchini)	carcpeB0892
Carg19519	Cucurbita pepo (Zucchini)	carcpeB0893
Carg19519	Wild cucumber (PI 183967)	carcpiB0660
Carg19519	Cucumber (Chinese Long) v2	carcuB0650
Carg19519	Cucumber (Chinese Long) v3	carcucB0661
Carg19519	Bottle gourd (USVL1VR-Ls)	carlsiB571
Carg19519	Bottle gourd (USVL1VR-Ls)	carlsiB572
Carg19519	Melon (DHL92) v3.5.1	carmeB0627
Carg19519	Melon (DHL92) v3.6.1	carmedB0635
Carg19519	Watermelon (Charleston Gray)	carwcgB0607
Carg19519	Watermelon (Charleston Gray)	carwcgB0609
Carg19519	Watermelon (97103) v1	carwmB0626
Carg19519	Watermelon (97103) v2	carwmbB0652
Carg19519	Watermelon (97103) v2	carwmbB0654
Carg19519	Wax gourd	carwgoB0747