Carg19334 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19334
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS like
Location	Cucurbita_argyrosperma_scaffold_137 : 449731 .. 450427 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCTATGGAATCCGTCTCCACCTCTACTACCACCACCTCCACCTCCGACAACCACCACCACCACCACCACCACCTCCAGTATCCTCTCTTGGAGCCTGCACCACCATCCCCACCGCCACCTGCACTCAGCAGGTACTTCGATTAAACAATCTTCTTATTTTTCTCATTATGTTCTGGTATTTCAACTCGAAGCATGAAAATGTTCTAGTTGTAACCGTACGTGACGCAGGTACGAGTCACAGAAGCGACGTGACTGGAACACGTTCGGGCAGTACCTAAAGAATCACCGCCCTCCACTCACACTATCCCGCTGCAGCGGCGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACCAAAGTCCACACCTCCTGCTGCCCCTTCTTCGGACACCCACAACCTCCTGCCCCCTGCCCATGCCCTCTCCGCCAGGCCTGGGGCAGCCTCGATGCTCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTGAGAGACTCGCAGGCCAAGGCCAGAGGGATTGCTTACGAGAAGAAGAAGCGTAAGAAATCCGCCATGGCTCCACTGAAGAAGCACCAACGACATGCCCCCGACGAACCCACGGATCACTCCGCTTCCTAA

mRNA sequence

ATGTTGGCTATGGAATCCGTCTCCACCTCTACTACCACCACCTCCACCTCCGACAACCACCACCACCACCACCACCACCTCCAGTATCCTCTCTTGGAGCCTGCACCACCATCCCCACCGCCACCTGCACTCAGCAGGTACGAGTCACAGAAGCGACGTGACTGGAACACGTTCGGGCAGTACCTAAAGAATCACCGCCCTCCACTCACACTATCCCGCTGCAGCGGCGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACCAAAGTCCACACCTCCTGCTGCCCCTTCTTCGGACACCCACAACCTCCTGCCCCCTGCCCATGCCCTCTCCGCCAGGCCTGGGGCAGCCTCGATGCTCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTGAGAGACTCGCAGGCCAAGGCCAGAGGGATTGCTTACGAGAAGAAGAAGCGTAAGAAATCCGCCATGGCTCCACTGAAGAAGCACCAACGACATGCCCCCGACGAACCCACGGATCACTCCGCTTCCTAA

Coding sequence (CDS)

ATGTTGGCTATGGAATCCGTCTCCACCTCTACTACCACCACCTCCACCTCCGACAACCACCACCACCACCACCACCACCTCCAGTATCCTCTCTTGGAGCCTGCACCACCATCCCCACCGCCACCTGCACTCAGCAGGTACGAGTCACAGAAGCGACGTGACTGGAACACGTTCGGGCAGTACCTAAAGAATCACCGCCCTCCACTCACACTATCCCGCTGCAGCGGCGCTCATATTCTCGAGTTCCTCCGCTACCTGGACCAGTTCGGTAAGACCAAAGTCCACACCTCCTGCTGCCCCTTCTTCGGACACCCACAACCTCCTGCCCCCTGCCCATGCCCTCTCCGCCAGGCCTGGGGCAGCCTCGATGCTCTCATCGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCGGCACCCGAGCCGTCAGGCTCTATTTAAGGGAAGTGAGAGACTCGCAGGCCAAGGCCAGAGGGATTGCTTACGAGAAGAAGAAGCGTAAGAAATCCGCCATGGCTCCACTGAAGAAGCACCAACGACATGCCCCCGACGAACCCACGGATCACTCCGCTTCCTAA

Protein sequence

MLAMESVSTSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGHPQPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKARGIAYEKKKRKKSAMAPLKKHQRHAPDEPTDHSAS

Homology

[Close]

BLAST of Carg19334 vs. NCBI nr
Match: XP_022925731.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata])

HSP 1 Score: 307.0 bits (785), Expect = 4.7e-80
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 44  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 103
           LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG
Sbjct: 41  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 100

Query: 104 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 163
           HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK
Sbjct: 101 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 160

Query: 164 ARGIAYEKKKRKKSAMAPLKKHQRHAPDEPTDHSAS 200
           ARGIAYEKKKRKKSAMAPLKKHQRHAPDEPTDHSAS
Sbjct: 161 ARGIAYEKKKRKKSAMAPLKKHQRHAPDEPTDHSAS 196

[Close]

BLAST of Carg19334 vs. NCBI nr
Match: XP_023544575.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 1.8e-79
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 104
           SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH
Sbjct: 48  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 107

Query: 105 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 164
           PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA
Sbjct: 108 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 167

Query: 165 RGIAYEKKKRKKSAMAPLKKHQRHAPDEPTDHSAS 200
           RGIAYEKKKRKKSAMAPLKKHQRHAPDEPTDHSAS
Sbjct: 168 RGIAYEKKKRKKSAMAPLKKHQRHAPDEPTDHSAS 202

[Close]

BLAST of Carg19334 vs. NCBI nr
Match: XP_022978370.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima])

HSP 1 Score: 293.9 bits (751), Expect = 4.1e-76
Identity = 154/158 (97.47%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 104
           SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH
Sbjct: 46  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 105

Query: 105 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 164
           PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA
Sbjct: 106 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 165

Query: 165 RGIAYEKKKRKKSAMAPLKKHQRHAPDEP---TDHSAS 200
           RGIAYE KKRKKSAMAPLKKHQRHAPDEP   TDHSAS
Sbjct: 166 RGIAYE-KKRKKSAMAPLKKHQRHAPDEPMPLTDHSAS 202

[Close]

BLAST of Carg19334 vs. NCBI nr
Match: XP_023004070.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima])

HSP 1 Score: 280.8 bits (717), Expect = 3.6e-72
Identity = 148/161 (91.93%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 104
           SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH
Sbjct: 27  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 86

Query: 105 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 164
           P XXXXXXXX RQAWGSLDALIGRLRAAFEENGGHPETNPFG+RAVRLYLREVRDSQAKA
Sbjct: 87  PXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGHPETNPFGSRAVRLYLREVRDSQAKA 146

Query: 165 RGIAYEKKKRKKSAMAPLKKHQRHA---PDEP---TDHSAS 200
           RGIAYEKKKRKKSA+APLKKHQRHA    D+P    DHSAS
Sbjct: 147 RGIAYEKKKRKKSALAPLKKHQRHAHAQEDQPMLFLDHSAS 187

[Close]

BLAST of Carg19334 vs. NCBI nr
Match: XP_022926336.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata])

HSP 1 Score: 277.7 bits (709), Expect = 3.1e-71
Identity = 146/161 (90.68%), Postives = 150/161 (93.17%), Query Frame = 0


Query: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 104
           +RYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH
Sbjct: 27  TRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 86

Query: 105 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 164
           P XXXXXXXX RQAWGSLDALIGRLRAAFEENGGHPETNPFG+RAVRLYLREVRDSQAKA
Sbjct: 87  PXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGHPETNPFGSRAVRLYLREVRDSQAKA 146

Query: 165 RGIAYEKKKRKKSAMAPLKKHQRHA---PDEP---TDHSAS 200
           RGIAYEKKKRKKSA+ PLKKHQRHA    D+P    DHSAS
Sbjct: 147 RGIAYEKKKRKKSALPPLKKHQRHAHAREDQPMLFLDHSAS 187

[Close]

BLAST of Carg19334 vs. TAIR10
Match: AT3G23290.2 (Protein of unknown function (DUF640))

HSP 1 Score: 234.6 bits (597), Expect = 5.4e-62
Identity = 109/127 (85.83%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 44  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 103
           LSRYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT  CPFFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 104 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 163
           HP         LRQAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREVRDSQAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 164 ARGIAYE 171
           ARGI+YE
Sbjct: 166 ARGISYE 172

[Close]

BLAST of Carg19334 vs. TAIR10
Match: AT2G31160.1 (Protein of unknown function (DUF640))

HSP 1 Score: 225.3 bits (573), Expect = 3.3e-59
Identity = 111/126 (88.10%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 104
           SRYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT+ C F+GH
Sbjct: 53  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGH 112

Query: 105 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 164
           P XXXXXXXXLRQAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREVRD Q+KA
Sbjct: 113 PXXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKA 172

Query: 165 RGIAYE 171
           RG++YE
Sbjct: 173 RGVSYE 178

[Close]

BLAST of Carg19334 vs. TAIR10
Match: AT1G07090.1 (Protein of unknown function (DUF640))

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-58
Identity = 102/132 (77.27%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 104
           SRYESQKRRDWNTF QYLKNH+PPL LSRCSGAH++EFL+YLDQFGKTKVH + CP+FGH
Sbjct: 30  SRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGH 89

Query: 105 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 164
            Q        L+QAWGSLDALIGRLRAA+EENGG P++NPF  RAVR+YLREVR+SQAKA
Sbjct: 90  QQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKA 149

Query: 165 RGIAYEKKKRKK 177
           RGI YEKKKRK+
Sbjct: 150 RGIPYEKKKRKR 161

[Close]

BLAST of Carg19334 vs. TAIR10
Match: AT5G28490.1 (Protein of unknown function (DUF640))

HSP 1 Score: 209.1 bits (531), Expect = 2.4e-54
Identity = 103/127 (81.10%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 104
           SRYE+QKRRDWNTF QYL+NHRPPL+L  CSGAH+LEFLRYLDQFGKTKVH   C FFG 
Sbjct: 24  SRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGL 83

Query: 105 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 164
           P    XXXXXLRQAWGSLDALIGRLRAA+EENGG PE NPFG+RAVRL+LREVRD QAKA
Sbjct: 84  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKA 143

Query: 165 RGIAYEK 172
           RG++YEK
Sbjct: 144 RGVSYEK 150

[Close]

BLAST of Carg19334 vs. TAIR10
Match: AT3G04510.1 (Protein of unknown function (DUF640))

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-53
Identity = 99/131 (75.57%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 104
           SRYE+QKRRDWNTF QYL+NH PPL+L+ CSGAH+L+FLRYLDQFGKTKVH   C FFG 
Sbjct: 32  SRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGL 91

Query: 105 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 164
           P    XXXXXLRQAWGSLDALIGRLRAA+EENGG PET+PFG+R+VR++LREVRD QAK+
Sbjct: 92  PNPPAXXXXXLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKS 151

Query: 165 RGIAYEKKKRK 176
           RG++YEKK+++
Sbjct: 152 RGVSYEKKRKR 162

[Close]

BLAST of Carg19334 vs. Swiss-Prot
Match: sp|Q9LW68|LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 9.7e-61
Identity = 109/127 (85.83%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 44  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 103
           LSRYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT  CPFFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query: 104 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 163
           HP         LRQAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREVRDSQAK
Sbjct: 106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 164 ARGIAYE 171
           ARGI+YE
Sbjct: 166 ARGISYE 172

[Close]

BLAST of Carg19334 vs. Swiss-Prot
Match: sp|A2YG32|G1L2_ORYSI (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58
Identity = 113/126 (89.68%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 104
           SRYESQKRRDW+TFGQYL+NHRPPL LSRCSGAH+LEFLRYLDQFGKTKVH + CPFFGH
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 105 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 164
           P XXXXXXXXLRQAWGSLDAL+GRLRAAFEE+GG PE NPFG RAVRLYLREVRDSQAKA
Sbjct: 81  PSXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 165 RGIAYE 171
           RGIAYE
Sbjct: 141 RGIAYE 146

[Close]

BLAST of Carg19334 vs. Swiss-Prot
Match: sp|Q652I1|G1L2_ORYSJ (Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58
Identity = 113/126 (89.68%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 104
           SRYESQKRRDW+TFGQYL+NHRPPL LSRCSGAH+LEFLRYLDQFGKTKVH + CPFFGH
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 105 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 164
           P XXXXXXXXLRQAWGSLDAL+GRLRAAFEE+GG PE NPFG RAVRLYLREVRDSQAKA
Sbjct: 81  PSXXXXXXXXLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 165 RGIAYE 171
           RGIAYE
Sbjct: 141 RGIAYE 146

[Close]

BLAST of Carg19334 vs. Swiss-Prot
Match: sp|O82268|LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.9e-58
Identity = 111/126 (88.10%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFGH 104
           SRYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVHT+ C F+GH
Sbjct: 53  SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGH 112

Query: 105 PQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAKA 164
           P XXXXXXXXLRQAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREVRD Q+KA
Sbjct: 113 PXXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKA 172

Query: 165 RGIAYE 171
           RG++YE
Sbjct: 173 RGVSYE 178

[Close]

BLAST of Carg19334 vs. Swiss-Prot
Match: sp|A2XAV5|G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.7e-58
Identity = 110/127 (86.61%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 44  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 103
           LSRYESQKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFL+Y+DQFGKTKVHT  CPF+G
Sbjct: 78  LSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKTKVHTPVCPFYG 137

Query: 104 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 163
           HP XXXXXXXXLRQAWGSLDALIGRLRAA+EENGG PE NPFG RAVRLYLREVR++QA+
Sbjct: 138 HPNXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQAR 197

Query: 164 ARGIAYE 171
           ARGI+YE
Sbjct: 198 ARGISYE 204

[Close]

BLAST of Carg19334 vs. TrEMBL
Match: tr|A0A0A0KPA1|A0A0A0KPA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 8.8e-67
Identity = 137/148 (92.57%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 44  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 103
           LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFG
Sbjct: 43  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFG 102

Query: 104 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 163
           HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGG P+TNPFGTRAVRLYLREVR+SQAK
Sbjct: 103 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGQPDTNPFGTRAVRLYLREVRESQAK 162

Query: 164 ARGIAYEKKKRKKSAMAPLK-KHQRHAP 191
           ARGIAYEKKKRKKS MAPLK  H +  P
Sbjct: 163 ARGIAYEKKKRKKSGMAPLKINHHQPMP 190

[Close]

BLAST of Carg19334 vs. TrEMBL
Match: tr|A0A1S3AZK8|A0A1S3AZK8_CUCME (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103484288 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.1e-66
Identity = 138/148 (93.24%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 44  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 103
           LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTS CPFFG
Sbjct: 42  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSSCPFFG 101

Query: 104 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 163
           HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGG PETNPFGTRAVRLYLREVR+SQAK
Sbjct: 102 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGQPETNPFGTRAVRLYLREVRESQAK 161

Query: 164 ARGIAYEKKKRKKSAMAPLK-KHQRHAP 191
           ARGIAYEKKKRKKSAMA LK  H +  P
Sbjct: 162 ARGIAYEKKKRKKSAMASLKINHHQPMP 189

[Close]

BLAST of Carg19334 vs. TrEMBL
Match: tr|A0A0D3D5J0|A0A0D3D5J0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106305758 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.1e-61
Identity = 116/139 (83.45%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 44  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 103
           LSRYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVH   CPFFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHMQICPFFG 105

Query: 104 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 163
           HP         LRQAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREVRDSQAK
Sbjct: 106 HPNPPAPCTCPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 164 ARGIAYEKKKRKKSAMAPL 183
           ARGI+YEKKKRK+   APL
Sbjct: 166 ARGISYEKKKRKRPPQAPL 184

[Close]

BLAST of Carg19334 vs. TrEMBL
Match: tr|A0A2J6M9J3|A0A2J6M9J3_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_3X117680 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.9e-61
Identity = 123/138 (89.13%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 44  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 103
           LSRYE+QKRRDWNTFGQYL+NHRPPLTLSRCSGAH+LEFLRYLDQFGKTKVHT  CPFFG
Sbjct: 40  LSRYENQKRRDWNTFGQYLRNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHTQLCPFFG 99

Query: 104 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 163
           HP XXXXXXXXLRQAWGSLDALIGRLRAA+EENGG PETNPFG RAVRLYLREVRDSQAK
Sbjct: 100 HPNXXXXXXXXLRQAWGSLDALIGRLRAAYEENGGKPETNPFGARAVRLYLREVRDSQAK 159

Query: 164 ARGIAYEKKKRKKSAMAP 182
           ARGI+YEKKKRK+    P
Sbjct: 160 ARGISYEKKKRKRPPQLP 177

[Close]

BLAST of Carg19334 vs. TrEMBL
Match: tr|M4DEL3|M4DEL3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 4.2e-61
Identity = 119/151 (78.81%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 44  LSRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHILEFLRYLDQFGKTKVHTSCCPFFG 103
           LSRYE+QKRRDWNTFGQYL+NHRPPL+LSRCSGAH+LEFLRYLDQFGKTKVH   CPFFG
Sbjct: 46  LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHMQICPFFG 105

Query: 104 HPQXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGHPETNPFGTRAVRLYLREVRDSQAK 163
           HP         LRQAWGSLDALIGRLRAAFEENGG PETNPFG RAVRLYLREVRDSQAK
Sbjct: 106 HPNPPAPCTCPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query: 164 ARGIAYEKKKRKKSAMAPL-KKHQRHAPDEP 194
           ARGI+YEKKKRK+   APL   HQ    + P
Sbjct: 166 ARGISYEKKKRKRPPQAPLPPPHQPGISNSP 196

The following BLAST results are available for this feature:

BLAST of Carg19334 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925731.1	4.7e-80	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata]	[more]
XP_023544575.1	1.8e-79	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022978370.1	4.1e-76	97.47	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima]	[more]
XP_023004070.1	3.6e-72	91.93	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima]	[more]
XP_022926336.1	3.1e-71	90.68	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata]	[more]

BLAST of Carg19334 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23290.2	5.4e-62	85.83	Protein of unknown function (DUF640)	[more]
AT2G31160.1	3.3e-59	88.10	Protein of unknown function (DUF640)	[more]
AT1G07090.1	2.1e-58	77.27	Protein of unknown function (DUF640)	[more]
AT5G28490.1	2.4e-54	81.10	Protein of unknown function (DUF640)	[more]
AT3G04510.1	2.1e-53	75.57	Protein of unknown function (DUF640)	[more]

BLAST of Carg19334 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LW68\|LSH4_ARATH	9.7e-61	85.83	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|A2YG32\|G1L2_ORYSI	2.0e-58	89.68	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]
sp\|Q652I1\|G1L2_ORYSJ	2.0e-58	89.68	Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1	[more]
sp\|O82268\|LSH3_ARATH	5.9e-58	88.10	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
sp\|A2XAV5\|G1L6_ORYSI	7.7e-58	86.61	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]

BLAST of Carg19334 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPA1\|A0A0A0KPA1_CUCSA	8.8e-67	92.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=4 SV=1	[more]
tr\|A0A1S3AZK8\|A0A1S3AZK8_CUCME	1.1e-66	93.24	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0D3D5J0\|A0A0D3D5J0_BRAOL	1.1e-61	83.45	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10630575...	[more]
tr\|A0A2J6M9J3\|A0A2J6M9J3_LACSA	1.9e-61	89.13	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_3X117680 PE=4 SV=1	[more]
tr\|M4DEL3\|M4DEL3_BRARP	4.2e-61	78.81	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006936	ALOG_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19334-RA	Carg19334-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 39..159 e-value: 4.1E-66 score: 220.8
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 46..173 score: 83.78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..199
None	No IPR available	PANTHER	PTHR31165:SF36	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 3	coord: 10..188
None	No IPR available	PANTHER	PTHR31165	FAMILY NOT NAMED	coord: 10..188

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19334	Cla009855	Watermelon (97103) v1	carwmB0292
Carg19334	Csa6G526250	Cucumber (Chinese Long) v2	carcuB0326
Carg19334	MELO3C007046	Melon (DHL92) v3.5.1	carmeB0301
Carg19334	ClCG01G025380	Watermelon (Charleston Gray)	carwcgB0292
Carg19334	CSPI06G37130	Wild cucumber (PI 183967)	carcpiB0332
Carg19334	Cucsa.048540	Cucumber (Gy14) v1	carcgyB0350
Carg19334	CmaCh07G000440	Cucurbita maxima (Rimu)	carcmaB0415
Carg19334	CmaCh03G014670	Cucurbita maxima (Rimu)	carcmaB0413
Carg19334	CmoCh03G014680	Cucurbita moschata (Rifu)	carcmoB0408
Carg19334	CmoCh07G000460	Cucurbita moschata (Rifu)	carcmoB0410
Carg19334	Lsi02G009970	Bottle gourd (USVL1VR-Ls)	carlsiB274
Carg19334	Cp4.1LG20g05800	Cucurbita pepo (Zucchini)	carcpeB0416
Carg19334	Cp4.1LG19g05450	Cucurbita pepo (Zucchini)	carcpeB0415
Carg19334	Cp4.1LG10g06560	Cucurbita pepo (Zucchini)	carcpeB0413
Carg19334	Cp4.1LG09g07120	Cucurbita pepo (Zucchini)	carcpeB0412
Carg19334	CsGy6G036510	Cucumber (Gy14) v2	carcgybB0312
Carg19334	MELO3C007046.2	Melon (DHL92) v3.6.1	carmedB0312
Carg19334	CsaV3_6G052630	Cucumber (Chinese Long) v3	carcucB0332
Carg19334	Cla97C01G025530	Watermelon (97103) v2	carwmbB0307

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19334	Carg14954	Silver-seed gourd	carcarB328

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19334	Wax gourd	carwgoB0385
Carg19334	Bottle gourd (USVL1VR-Ls)	carlsiB273
Carg19334	Watermelon (Charleston Gray)	carwcgB0293
Carg19334	Watermelon (97103) v1	carwmB0291